Sign in

Michael Baudis

@mbaudis.bsky.social
75 followers 41 following 304 posts

Cancer genomics, computational oncogenomics, open research data, progenetix.org, Global Alliance for Genomics and Healthe GA4GH, Swiss Institute of Bioinformatics, ELIXIR; Professor of Bioinformatics at the University of Zurich UZH

PostsRepliesMedia
Reposted by Michael Baudis
Rajiv McCoy @rajivmccoy.bsky.social · 08/10/2026
Johns Hopkins Biology is hiring a tenure-track Assistant Professor in computational genetics and genomics. Applications due Nov. 8th: apply.interfolio.com/194924 In my experience, this has been an incredibly supportive environment to build a lab. Please feel free to reach out with any questions.
apply.interfolio.com
Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
04855
Reposted by Michael Baudis
Michael Baudis @mbaudis.bsky.social · 08/10/2026
At the GA4GH meeting in Singapore last week I really enjoyed Jonathan Lotempio’s emphasis that the way population enriched variants are usually drawn in UMaps etc. emphasizes the differences from a few variants in contrast to the spread/continuum.
041
Reposted by Michael Baudis
Michael Baudis @mbaudis.bsky.social · 17h
They also read Iain M. Banks and thought “this Veppers guy is cool as hell”.
051
Michael Baudis @mbaudis.bsky.social · 17h
They also read Iain M. Banks and thought “this Veppers guy is cool as hell”.
051
Reposted by Michael Baudis
William Gibson @greatdismal.bsky.social · 09/10/2026
Having long been aware of those tech bros who read my work as utopian porn, where they’ve taken that doesn’t exactly surprise me.
10768291749
Michael Baudis @mbaudis.bsky.social · 08/10/2026
At the GA4GH meeting in Singapore last week I really enjoyed Jonathan Lotempio’s emphasis that the way population enriched variants are usually drawn in UMaps etc. emphasizes the differences from a few variants in contrast to the spread/continuum.
041
Reposted by Michael Baudis
Marc Robinson-Rechavi @marcrr.bsky.social · 08/10/2026
Day 4 of Nobel week: ♂♂♂♂♂♂♀😅
143
Reposted by Michael Baudis
Laura Baudis @lbaudis.bsky.social · 08/10/2026
Very good news regarding the Nobel Prize in Literature - the Canadian author Anne Carson is one of my favourite poets! Here from her book “If Not, Winter: Fragments of Sappho” "stars around the beautiful moon hide back their luminous form whenever all full she shines on the earth silvery"
001
Reposted by Michael Baudis
46&2 @7719deftones.bsky.social · 06/10/2026
This is what's data centers have done in the US
011
Michael Baudis @mbaudis.bsky.social · 06/10/2026
“My other car is also a Tesla.”
060
Reposted by Michael Baudis
Laura Baudis @lbaudis.bsky.social · 06/10/2026
Amazing news for neutrinos, and I am very happy for Francis and for the IceCube collaboration!
092
Michael Baudis @mbaudis.bsky.social · 06/10/2026
Sam Altman took Jane Wickline’ s “AI is the devil and I its maker” for the real Dario Amodei and thought “Hold my protein sludge…”. Crossposted with @openvibe.social
011
Michael Baudis @mbaudis.bsky.social · 05/10/2026
This warrants an extension to Betteridge’s Law of Headlines. Ian @ianbetteridge.com , please?
010
Reposted by Michael Baudis
Justin Jest @justinjest.bsky.social · 27/09/2026
213956945
Michael Baudis @mbaudis.bsky.social · 26/09/2026
Not for the lack of trying.
020
Reposted by Michael Baudis
Hari Kunzru @harikunzru.bsky.social · 23/09/2026
John Coltrane, born September 23, 1926 youtu.be/tZRhPOoeKto?...
youtu.be
A Love Supreme, Pt. I – Acknowledgement (Live)
YouTube video by John Coltrane - Topic
0318
Michael Baudis @mbaudis.bsky.social · 23/09/2026
Some authors should never get published. Too inspirational.
000
Reposted by Michael Baudis
Matt Miller @mattmiller.bsky.social · 20/09/2026
a comic by Russ Heath, who drew the comic one of Lichtenstein’s most famous panels was based on
121393495
Michael Baudis @mbaudis.bsky.social · 21/09/2026
Time resolution?
000
Reposted by Michael Baudis
Carl T. Bergstrom @carlbergstrom.com · 21/09/2026
With Gould at least, we don't have to speculate. Here, a 1997 essay of his. www.nybooks.com/articles/199...
Does this argument imply that all genetically and biologically based attributes of our universal human nature must therefore be adaptations? Of course not. Many, if not most, universal behaviors are probably spandrels, often co-opted later in human history for important secondary functions. The human brain is the most complicated device for reasoning and calculating, and for expressing emotion, ever evolved on earth. Natural selection made the human brain big, but most of our mental properties and potentials may be spandrels—that is, nonadaptive side consequences of building a device with such structural complexity. If I put a small computer (no match for a brain) in my factory, my adaptive reasons for so doing (to keep accounts and issue paychecks) represent a tiny subset of what the computer, by virtue of inherent structure, can do (factor-analyze my data on land snails, beat or tie anyone perpetually in tic-tac-toe). In pure numbers, the spandrels overwhelm the adaptations.The human brain must be bursting with spandrels that are essential to human nature and vital to our self-understanding but that arose as nonadaptations, and are therefore outside the compass of evolutionary psychology, or any other ultra-Darwinian theory. The brain did not enlarge by natural selection so that we would be able to read or write. Even such an eminently functional and universal institution as religion arose largely as a spandrel if we accept Freud’s old and sensible argument that humans invented religious belief largely to accommodate the most terrifying fact that our large brains forced us to acknowledge: the inevitability of personal mortality. We can scarcely argue that the brain got large so that we would know we must die!
1133
Reposted by Michael Baudis
Joe Bak-Coleman @jbakcoleman.bsky.social · 20/09/2026
I don’t mean this to be cruel, but there’s just too much air being taken up by people with media or tech backgrounds who think their hot take on consciousness with LLMs is new, and lord it has all been done before and we’re past that. Christ, half the news cycle is yud refusing to read a book.
738464
Reposted by Michael Baudis
Ted Underwood @tedunderwood.com · 20/09/2026
Teaching Neuromancer this semester, and I'm proud to say that a CS undergrad in my class invented this joke independently
141546211
Reposted by Michael Baudis
SIB Swiss Institute of Bioinformatics @sib.swiss · 17/09/2026
Advances for health, biodiversity & trustworthy AI; new connections; a unique artistic performance; Geneva-wide celebrations – and cross-societal recognition of the value of life-science data. See highlights from the record 2026 ECCB @eccb-europe.bsky.social
sib.swiss
Academic, government and industry leaders stress strategic value of data
Over 1,500 experts from 63 countries advanced health, environmental protection and trustworthy AI in Geneva at the 25th European Conference on Computational Biology (ECCB), from 31 August to 4 Septemb...
013
Michael Baudis @mbaudis.bsky.social · 17/09/2026
Future winners of the AI hype: Apple (moving smartly), and the EU (projecting hindsight to the Now).
000
Michael Baudis @mbaudis.bsky.social · 17/09/2026
Rather short, this road.
000
Michael Baudis @mbaudis.bsky.social · 13/09/2026
NATO/EU should have declared prevention of attacks coming in over Ukrainian airspace - no matter where targeted - a legitimate initiator of defensive action, a long time ago.
010
Reposted by Michael Baudis
Alex Merz 🇺🇸🇨🇦🇺🇦 @merz.bsky.social · 12/09/2026
Not a lawyer but a scientist. I am consistently finding that in literature research, the more powerful the model I employ, the more profound its errors are. And that is a *huge* waste of *my* time. Simpler models are *less* likely to output "reasoned" garbage.
151
Reposted by Michael Baudis
Terence Tao @teorth.bsky.social · 11/09/2026
A group of 25 Fields Medalists, including myself, have made a joint declaration on Math and AI: mathandai.org . We welcome additional signatories. See also this article in the Economist announcing the declaration: www.economist.com/science-and-...
mathandai.org
Declaration — Math and AI
Read the declaration and add your name.
422073934
Michael Baudis @mbaudis.bsky.social · 09/09/2026
But first WTFM!
100
Reposted by Michael Baudis
Creepy Jazz Enthusiast 🎃 @cicadaqueen.bsky.social · 09/09/2026
Man pages
1322
Michael Baudis @mbaudis.bsky.social · 07/09/2026
But filenames should start with ISO8601 dates - so "2022-05-19-THE HEIRESS EFFECT copyright" :-)
001
Reposted by Michael Baudis
Jess-Icabod Zellers @stellagarp.bsky.social · 07/09/2026
I once again wish for Microsoft Word to gain a corporeal form so I can stab it 🔪
This book I'm editing includes the phrase "Recent scholarship has argued that," which the grammar check in Microsoft Word, now powered by so-called AI, wants me to consider rephrasing as "Recent scholarships have argued that."
1333625
Reposted by Michael Baudis
JimAlvarez @jimalvarez.bsky.social · 06/09/2026
static.klipy.com
Scotty Hello Computer
ALT: Scotty Hello Computer
0311
Reposted by Michael Baudis
Michael Baudis @mbaudis.bsky.social · 03/09/2026
It was probably just bots chatting but I *felt* tempted to say “Maughan called it.”. Though probably there is something by Lem about this, as always.
011
Michael Baudis @mbaudis.bsky.social · 03/09/2026
It was probably just bots chatting but I *felt* tempted to say “Maughan called it.”. Though probably there is something by Lem about this, as always.
011
Michael Baudis @mbaudis.bsky.social · 03/09/2026
Informative and entertaining lecture!
000
Michael Baudis @mbaudis.bsky.social · 02/09/2026
Adobe? What is that - the nineties?
000
Reposted by Michael Baudis
Scientific American @sciam.bsky.social · 02/09/2026
Deep under a mountain in Italy, the dark matter experiment XENONnT has found something surprising: the faintest neutrinos ever witnessed.
scientificamerican.com
Dark matter experiment catches quietest neutrinos ever measured
In its hunt for dark matter, the XENONnT experiment has detected the rare, feeble glow of neutrinos smacking into electrons
35114
Reposted by Michael Baudis
Laura Baudis @lbaudis.bsky.social · 01/09/2026
With XENONnT we observed solar pp neutrinos via neutrino-electron scattering. With an exposure of 2.46 t x y and electron recoil energies from 1 keV to 140 keV (probing neutrinos with energies down to 17 keV) the measured flux is (10.2±2.0)x10^10 cm^-2 s^-1. Read more at: arxiv.org/abs/2608.29450
The solar pp flux estimated from the inference results. Top: The best-fit result is shown as a solid red point. Also plotted are results from combining GALLEX/GNO and SAGE, Borexino, and PandaX-4T. The prediction from the B16-GS98 solar model is indicated by a vertical grey dashed line. Bottom: Log likelihood ratio as a function of the solar pp-flux. Dashed lines indicate different significance levels.
084
Michael Baudis @mbaudis.bsky.social · 31/08/2026
So sad that I cannot envision any conversation where I’d drop this nugget - but thank you nevertheless. > They're scanning the Kama Sutra into AI and it deleted all the pages.
000
Reposted by Michael Baudis
BF Francis Ouellette @bffo.bsky.social · 27/08/2026
Two posts that should have come out together? 🧬🖥️🧪🔓 1. The multi-omics fallacy in microbiome science ⬇️ bsky.app/profile/bffo... 2. Ten quick tips for causal analysis of biomedical omics data ⬇️ bsky.app/profile/bffo...
053
Reposted by Michael Baudis
David_j_roth @davidjroth.bsky.social · 27/08/2026
"Lake America" instantly just absolutely clogged with algae. Six uniformed National Guard guys standing on a beach dumping windex into it. It smells like a turtle tank.
15695831153
Reposted by Michael Baudis
Carl T. Bergstrom @carlbergstrom.com · 27/08/2026
When I think of all the amazing scientists that have lost their jobs here in the states because of Trump/Vought/Musk/RFK Jr/the GOP, it makes my blood boil to see the US interfering in a single overseas postdoctoral appointment matter to advance a white supremacist agenda.
430452
Michael Baudis @mbaudis.bsky.social · 26/08/2026
Accelerated future compared to recent dystopias: “The Sunken Land…” has dried out, the klept has been reborn in Washington. Winner: “The Water Knife”, still on (accelerated) track. (Apologies to M. John Harrison, @williamgibson.bsky.social and @paolobacigalupi.bsky.social )
010
Michael Baudis @mbaudis.bsky.social · 26/08/2026
… but then we now run subs w/ “English” language too because of pretentious mumbling (and I do not mean Moira who was a delight).
000
Michael Baudis @mbaudis.bsky.social · 26/08/2026
Rarely. Watched Stalker in a Berlin cinema in 1991 or so, no subs - but then dialogue is … limited and I’ve read the book 10 times. Better: Rashomon with French subtitles, switching to Spanish ones w/ the 2nd reel. Recent warning in “Drops of God” tat several languages are spoken (check them…).
100
Reposted by Michael Baudis
Tim Maughan @timmaughan.bsky.social · 25/08/2026
what ppl forget about LLMs is that if you start every prompt with “i am an academic so a very special and smart person“ then anything that follows has no carbon or water cost, no refugees have to clean the data of violent child abuse imagry, and everyone is fairly compensated for their stolen work
326874
Michael Baudis @mbaudis.bsky.social · 24/08/2026
Well…
010
Michael Baudis @mbaudis.bsky.social · 24/08/2026
Aesthetic nightmare; looking somewhat repulsive since, well, pictures of him exist. Not the slightest bit of style, taste. Politics? Don’t get me started!
000
Michael Baudis @mbaudis.bsky.social · 24/08/2026
Ask it to do all charts in LaTeX.
000