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Max Emil Schön

@maxemilschon.bsky.social
83 followers 117 following 4 posts

postdoc @ MPI-MR Heidelberg evolutionary genomics of protists and their viruses long reads, metagenomics

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Reposted by Max Emil Schön
Thijs J. G. Ettema 🦠🔬🇳🇱🇸🇪🇪🇺 @ettema.bsky.social · 05/01/2026
I have a postdoc position in metagenomic exploration available in my group. Candidates with documented experience in phylo & metagenomics and preferably with petabase-scale data mining and GLM workflows are encouraged to apply. Come join us! 🧬🦠💻 Please repost Apply here: www.wur.nl/en/vacancy/p...
wur.nl
Postdoctoral researcher Phylogenomics and metagenomics
Are you just as excited as we are about the fascinating world of microorganisms? Do you want to contribute to exploring and genomically characterize novel prokaryotic lineages? Do you have a PhD degre...
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Luis Javier Galindo @luisjagago.bsky.social · 14/10/2025
Our study on the first rhodopsin channels known to respond to UV light is now published in PNAS! And they come from our favourite protists, apusomonads! #protistonsky www.pnas.org/doi/full/10....
pnas.org
Apusomonad rhodopsins: A new family of ultraviolet to blue light–absorbing rhodopsin channels | PNAS
Apusomonads are sediment-dwelling bacterivorous protists that are sister to all Opisthokonta. They have been found to show a negative phototactic r...
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David Needham @animalkewls.bsky.social · 31/07/2025
🚨 In case you missed it… our 4-year time-series analysis of Arctic Ocean viruses is out now! Near-monthly samples — including through the dark, cold, polar winter ❄️ — using long-read metagenomics. Short thread 🧵👇
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Alex de Mendoza @alexdemendoza.bsky.social · 28/07/2025
Happy to see our latest work out in @molbioevol.bsky.social. We revisit the evolution of 5-methylcytosine across neglected eukaryotic supergroups, establishing an ancestral repressive role silencing genome invaders, both transposons and viral elements👾: academic.oup.com/mbe/advance-... 🧵 1/7
academic.oup.com
Repressive cytosine methylation is a marker of viral gene transfer across divergent eukaryotes
Abstract. Cytosine DNA methylation patterns vary widely across eukaryotes, with its ancestral roles being understood to have included both transposable ele
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Stephan Köstlbacher @stephkoe.bsky.social · 20/07/2025
1. 🧵 New preprint out! WitChi: a fast, open-source Python tool to detect, quantify & prune compositional bias in MSAs. Lightweight, tree-free, scalable to 5k+ taxa... so we applied it to the GTDB archaea MSA. #ArchaeaSky #MEvoSky #MicroSky 🔗 doi.org/10.1101/2025... 💻 github.com/stephkoest/w...
biorxiv.org
WitChi: Efficient Detection and Pruning of Compositional Bias in Phylogenomic Alignments Using Empirical Chi-Squared Testing
Convergent evolution, where unrelated taxa independently evolve similar nucleotide or amino acid compositions, can introduce compositional bias into biological sequence data. Such biases distort phylo...
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Daniel Tamarit @danieltamarit.bsky.social · 14/05/2025
New vacancy in my team! PhD student position on microbial genome evolution, focusing on the evolutionary principles underlying bacterial genome architecture. Please repost and share with talented MSc students in #evobio, bioinformatics or related :) www.uu.nl/en/organisat... #MEvoSky #MicroSky
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Luis Javier Galindo @luisjagago.bsky.social · 18/04/2025
First study from the lab is out! We describe ApuRs, a new family of microbial rhodopsins unique from apusomonads. ApuRs represent the first anion-conducting rhodopsin channels that can be controlled by UV light, offering potential as new optogenetic tools. #protistsonsky doi.org/10.1101/2025... 👇
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Fabien Burki @fburki.bsky.social · 20/04/2025
Happy to have played a small part in this. Prometheid is a proposed supergroup that contains previously deep orphan lineages. www.biorxiv.org/content/10.1... #protistsonsky
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Carlos Santana Molina @santanamolina.bsky.social · 03/03/2025
Asgardarchaea & Alphaproteobacteria: key players for the assembly eukaryotic central carbon metabolism! Our new study reveals their gene contributions to glycolysis & TCA cycle, supporting synthrophic scenarios of eukaryogenesis. rdcu.be/eb0aK
rdcu.be
Chimeric origins and dynamic evolution of central carbon metabolism in eukaryotes
Nature Ecology & Evolution - Analysis of the eukaryotic gene repertoires mediating central carbon metabolism identifies ancestral contributions from Alphaproteobacteria, Asgardarchaeota and...
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Max Emil Schön @maxemilschon.bsky.social · 14/02/2025
#ProtistsOnSky
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Javier Santoyo @jsantoyo.bsky.social · 10/02/2025
tidk: a toolkit to rapidly identify telomeric repeats from genomic datasets. #TelomericRepeats #AssembledGenomces #LongReads #Bioinformatics 🧬 🖥️ academic.oup.com/bioinformati...
academic.oup.com
tidk: a toolkit to rapidly identify telomeric repeats from genomic datasets
AbstractSummary. tidk (short for telomere identification toolkit), uses a simple, fast algorithm to scan long DNA reads for the presence of short tandemly
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Corey Holt @coreyholt.bsky.social · 21/01/2025
Interested in protist parasites? Want to learn some fun bioinformatics? Think this apicomplexan looks cool? Great! Come and do some protist genomics at @uniofbath.bsky.social! We're advertising a fully-funded PhD studentship open to UK & International applicants! www.findaphd.com/phds/project...
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Fabien Burki @fburki.bsky.social · 19/01/2025
Stoked about this manuscript, many years in the making. We present an original resource of ~700 highly curated plastid MAGs of marine pelagic algae. Among these we found a novel deep branching group of plastid genomes; we informally call them leptophytes www.biorxiv.org/content/10.1...
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Megan Sorensen @messorensen.bsky.social · 11/12/2024
Out today! Our review on the current evidence of protein import into endosymbionts/early organelles. We cover protists, insects and plant systems, so something for everybody! With Mygg Stiller, Lena Kröninger and Eva Nowack. #protistsonsky #SymbioSky febs.onlinelibrary.wiley.com/doi/full/10....
febs.onlinelibrary.wiley.com
FEBS Press
The acquisition of bacterial endosymbionts by ancient host cells followed by massive adaptation of the partners gave rise to mitochondria and plastids. Today, various systems with younger and less in...
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Bas E. Dutilh @bedutilh.bsky.social · 25/10/2024
We found new #Crassvirales clades on #Antarctica (prospective families): @goncalopiedade.bsky.social's new paper on the viruses in Antarctic waters is out! Check out the manuscript (www.nature.com/articles/s41...) and Gonçalo's "Behind the Paper": communities.springernature.com/posts/unveil...
communities.springernature.com
Unveiling the Hidden World of Antarctic Marine Viruses
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