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maxeggl.bsky.social

@maxeggl.bsky.social
34 followers 13 following 34 posts
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Reposted by @maxeggl.bsky.social
Instituto de Neurociencias CSIC-UMH @neuroalc.bsky.social · 27/05/2026
🔥 New study from @desantislab.bsky.social is now published in the journal Communications Medicine Researchers @maxeggl.bsky.social & Silvia De Santis develop a simulation- and AI-based approach to speed up brain MRI scans while maintaining high accuracy More info 👇 in.umh-csic.es/en/articulos...
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maxeggl.bsky.social @maxeggl.bsky.social · 17/12/2025
We also quantify how costly delayed mitigation can be for severe diseases. Many thanks to Laura for her excellent first-author work, and to @violapriesemann.bsky.social for a wonderful collaboration.
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maxeggl.bsky.social @maxeggl.bsky.social · 17/12/2025
Main results: with constant R₀, the optimal response is binary—either strict mitigation or none at all. With seasonality, mitigation is stricter in winter but infections peak in spring with a delayed single wave. Even with vaccination, optimal policies can produce transient waves.
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maxeggl.bsky.social @maxeggl.bsky.social · 17/12/2025
Happy to announce a new preprint with @violapriesemann.bsky.social ! We introduce an optimization framework to balance infection costs against mitigation costs during epidemics and pandemics, deriving optimal mitigation strategies rather than fixing policies ad hoc. arxiv.org/abs/2512.11454
arxiv.org
Optimizing infectious disease mitigation under dynamic conditions
Mitigation measures are essential for controlling the spread of infectious diseases during pandemics and epidemics, but they impose considerable societal, individual, and economic costs. We developed ...
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Reposted by @maxeggl.bsky.social
Patricia Martínez-Tazo @patriciamtazo.bsky.social · 16/11/2025
We've arrived in San Diego for #SfN25! 🌴🧠 @maxeggl.bsky.social Proudly representing @desantislab.bsky.social and super excited to attend the biggest neuroscience conference. Ready to learn, share, and connect! 🔬✨ #Neuroscience #SfN2025
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maxeggl.bsky.social @maxeggl.bsky.social · 15/11/2025
Excited to be in San Diego to be showing off my work with @tatjanat.bsky.social at #SfN25 #Sfn2025! Come by on Monday and have a look if you are interested in synaptic plasticity and automated analysis of calcium images (PSTR152.15)!
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Reposted by @maxeggl.bsky.social
Instituto de Neurociencias CSIC-UMH @neuroalc.bsky.social · 11/07/2025
Huge thanks to: 🔹 David Moratal - @upv.es 🔹 @plopezlarrubia.bsky.social - @iibm-csic-uam.bsky.social 🔹 Mohamed Selim - @uniofnottingham.bsky.social 🔹 From @neuroalc.bsky.social: Santiago Canals @canalslab.bsky.social, Silvia De Santis @desantislab.bsky.social & @maxeggl.bsky.social 🙌
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maxeggl.bsky.social @maxeggl.bsky.social · 01/07/2025
However, this time I managed! I would like to thank @silviadesantis.bsky.social @desantislab.bsky.social for the incredible support, which I think was exactly the difference that allowed me to succeed this year. Now on to more science and research at the intersection between neuroscience and ML!
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maxeggl.bsky.social @maxeggl.bsky.social · 01/07/2025
With a bit of delay (it’s taken a while to process), I am happy to announce that I was awarded a #RyC2024 fellowship this year! One of the most prestigious research fellowships in Spain, I have been working towards this goal for a long time (with many rejections along the way)!
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maxeggl.bsky.social @maxeggl.bsky.social · 20/06/2025
9/ 💡 SpyDen bridges the gap between molecular-resolution imaging and user-friendly analysis. If you’re doing fluorescence imaging of neurons—check it out. Reproducible, customizable, and made for the community. #OpenScience #Neuroinformatics #Microscopy
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maxeggl.bsky.social @maxeggl.bsky.social · 20/06/2025
8/ 📦 Get it here: Code: github.com/meggl23/SpyDen Compiled executables: gin.g-node.org/CompNeuroNet... Documentation & tutorials included. This is an ongoing project so we’d love feedback from the community!
github.com
GitHub - meggl23/SpyDen: The codebase for the SpyDen tool (under preparation)
The codebase for the SpyDen tool (under preparation) - meggl23/SpyDen
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maxeggl.bsky.social @maxeggl.bsky.social · 20/06/2025
7/ 🖥️ Works out of the box: • For coders & non-coders • Trained networks available • No need to install complex dependencies • Built for transparency and customization
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maxeggl.bsky.social @maxeggl.bsky.social · 20/06/2025
6/ 🧪 We validated SpyDen against expert annotations across diverse datasets and use cases. It performs reliably, making it suitable for both exploratory research and reproducible pipelines.
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maxeggl.bsky.social @maxeggl.bsky.social · 20/06/2025
5/ 🧰 What can SpyDen do? • Detect neurites & synapses • Track fluorescent puncta over time • Analyze intensity & localization • Export data in standard formats • All with a GUI and video tutorials for onboarding
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maxeggl.bsky.social @maxeggl.bsky.social · 20/06/2025
4/ ✅ Enter SpyDen: A Python-based platform designed to address this with 3 core goals: 1️⃣ Easy to use for multiple tasks 2️⃣ Fully open-source, with open data formats 3️⃣ Editable annotations, robust across resolutions
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maxeggl.bsky.social @maxeggl.bsky.social · 20/06/2025
3/ ❌ Most workflows today: • Multiple software packages • Custom scripts • Manual annotation • Poor reproducibility • Limited scalability And many AI tools are not general-purpose, not open, or hard to modify.
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maxeggl.bsky.social @maxeggl.bsky.social · 20/06/2025
2/ 🔍 Motivation: Studying learning and memory means understanding molecules inside axons, dendrites, and synapses. Modern microscopy can detect single molecules— …but analyzing those images? Still often manual, fragmented, or semi-automated.
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maxeggl.bsky.social @maxeggl.bsky.social · 20/06/2025
🧵1/Just published: SpyDen, developed with @tatjanat.bsky.social @surbhitwagle.bsky.social, J. Filling, T. Chater & Y. Goda — an open-source Python tool for analyzing 2D microscopy time-series of neurons. GUI-based, robust, and validated by experts. 🔗 shorturl.at/IVmyM Read on for more: 👇
shorturl.at
SpyDen: Simplifying molecular and structural analysis across spines and dendrites
AbstractMotivation. Investigating the molecular composition of different neural compartments such as axons, dendrites, or synapses, is critical for underst
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maxeggl.bsky.social @maxeggl.bsky.social · 30/04/2025
Our pop science article (in Spanish 🇪🇸) breaks it down for everyone: shorturl.at/esXTu And check out the preprint too: shorturl.at/8agYv @neuroalc.bsky.social 🧵
shorturl.at
Menos tiempo, mejor diagnóstico: cuando la IA alivia las listas de espera en resonancia magnética
La IA permite reducir drásticamente el tiempo de exploración en resonancias magnéticas, aliviando listas de espera en hospitales. ¿La clave? Utilizar datos simulados en su entrenamiento para obtener i...
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maxeggl.bsky.social @maxeggl.bsky.social · 30/04/2025
Why this matters: ✔️ Shorter, more comfortable scans ✔️ More patients can get high-quality imaging ✔️ Older, noisy datasets can now be rescued ✔️ Clinics can finally use advanced dw-MRI tools All without needing to share or store sensitive patient data. (6/n)
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maxeggl.bsky.social @maxeggl.bsky.social · 30/04/2025
We trained SBI to estimate key diffusion parameters from fewer MRI measurements — and it worked. ✨ 90% faster scans ✨ High accuracy preserved ✨ Robust even with noisy data (5/n)
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maxeggl.bsky.social @maxeggl.bsky.social · 30/04/2025
Enter: Simulation-Based Inference (SBI) — a new AI approach that flips the script. Instead of training on huge amounts of real patient data, SBI learns from simulated data and can handle noisy, sparse measurements much more efficiently. (4/n)
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maxeggl.bsky.social @maxeggl.bsky.social · 30/04/2025
Current methods need to oversample like crazy to get good-quality maps. That’s why advanced diffusion imaging is rarely used outside high-end research labs. Patients? They get the basics—if they’re lucky. (3/n)
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maxeggl.bsky.social @maxeggl.bsky.social · 30/04/2025
Diffusion-weighted MRI (dw-MRI) is a powerhouse in neuroimaging — revealing microstructural details of the brain without invasive procedures. But there’s a catch: it’s slow and resource-heavy. Long scans = longer waitlists + fewer patients helped. (2/n)
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maxeggl.bsky.social @maxeggl.bsky.social · 30/04/2025
Our article "Menos tiempo, mejor diagnóstico: cuando la IA alivia las listas de espera en resonancia magnética" was published @es.theconversation.com! It deals with the problem of making MRIs 10x faster without losing accuracy? Let’s dive in! @desantislab.bsky.social @silviadesantis.bsky.social
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maxeggl.bsky.social @maxeggl.bsky.social · 28/04/2025
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maxeggl.bsky.social @maxeggl.bsky.social · 28/04/2025
Incredible discussions and insights—already excited for next year’s edition! Interested in joining or learning more? Follow us for future updates, and stay tuned! 🚀 #Workshop #Neuroscience #AI
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maxeggl.bsky.social @maxeggl.bsky.social · 28/04/2025
16 talented participants explored exciting frontiers at the intersection of neuroscience and AI. This year’s focus: dimensionality reduction and understanding high-dimensional data through dynamical systems. #DimensionalityReduction #DataScience
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maxeggl.bsky.social @maxeggl.bsky.social · 28/04/2025
Just wrapped up the 3rd Bio-inspired Deep Learning Workshop, led by Angus Chadwick (@edinburgh-uni.bsky.social ), with co-organizers Laura Bernaez timon and Janko Petkovic, plus fantastic support from @isabelmaria-c.bsky.social and Arthur Pellegrino. Funded by @jherzstiftung.bsky.social. #NeuroAI 🧵
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maxeggl.bsky.social @maxeggl.bsky.social · 31/01/2025
Don't miss out on this opportunity! Link to the application (deadline 21st of February): shorturl.at/s9RNI (flyer with more information here: rb.gy/21z6l9)
shorturl.at
Application Bio-inspired deep-learning workshop
Application form for the Bio-inspired deep learning Workshop at the Weingut Domhof in Guntersblum (close to Mainz) from the 22nd to the 25th of April. Led by Dr. Angus Chadwick, it will provide hands-...
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maxeggl.bsky.social @maxeggl.bsky.social · 31/01/2025
Exciting news! We got funding to organize "Bio-inspired Deep Learning" workshop near Mainz. This time on the topic of dimensionality reduction techniques and led by Angus Chadwick. Applications are now open for participants from both experimental/ computational backgrounds.
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Reposted by @maxeggl.bsky.social
Translational Imaging Biomarkers Lab @desantislab.bsky.social · 29/11/2024
Second highlight of the lab: our first work combining the magic of AI with the power of dw-MRI. Full thread below and on @maxeggl.bsky.social page! 🤖🧲🧠
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maxeggl.bsky.social @maxeggl.bsky.social · 29/11/2024
Read more here: shorturl.at/TyLop @neuroalc.bsky.social
shorturl.at
More with less: Simulation-based inference enables accurate diffusion-weighted MRI with minimal acquisition time
Diffusion-weighted magnetic resonance imaging (dw-MRI) is an essential tool in neuroimaging, providing non-invasive insights into brain microstructure. However, obtaining reproducible and accurate maps requires lengthy acquisition due to the need to massively oversample the parameter space. This means that tensor-based dw-MRI accessibility is still relatively low in daily practice, and more advanced approaches with increased sensitivity and specificity to microstructure are seldom applied in research and clinical contexts. Motivated by recent advances in simulation-based inference (SBI) methods, this work uses neural networks to model the posterior distribution of key diffusion parameters when provided experimental data, allowing accurate estimation with fewer measurements and without the need to train on real data. We find that SBI outperforms standard non-linear least squares fitting under noisy and sparse data conditions in both diffusion tensor and kurtosis imaging, reducing imaging time by 90% while maintaining high accuracy and robustness. Demonstrated on simulated and real data in healthy and pathological brains, this approach can substantially impact radiology by: i) increasing dw-MRI access to more patients, including those unable to undergo long exams; ii) promoting advanced dw-MRI protocols for greater microstructure sensitivity; and iii) rescuing older data where noise hindered analysis. Combining SBI with dw-MRI could greatly improve clinical MRI workflows by reducing patient discomfort, enhancing scan efficiency, and enabling advanced imaging approaches in a data and privacy friendly way. ### Competing Interest Statement The authors have declared no competing interest.
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maxeggl.bsky.social @maxeggl.bsky.social · 29/11/2024
SBI is a powerful method that can have an impact on dw-MRI: • needs no real data for training - privacy data efficiency enhancing • outperforms traditional methods in noisy and sparse conditions • could transform MRI workflows by increasing patient comfort/accessibility (2/n)
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maxeggl.bsky.social @maxeggl.bsky.social · 29/11/2024
Also - because we are really proud of this preprint with @desantislab.bsky.social! We applied simulation-based inference to diffusion-weighted MRI (dw-MRI) achieving up to 90% reduction in acquisition time while maintaining high accuracy and robustness. (1/n)
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maxeggl.bsky.social @maxeggl.bsky.social · 29/11/2024
The second tackles the challenging problem of fully agnostic control, where the unknown parameter can be any real number. Our strategy combines: - Estimating the unknown parameter - Switching to different control strategies based on that estimate We're really excited about this work! Check it out!
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maxeggl.bsky.social @maxeggl.bsky.social · 29/11/2024
In the first paper, we considered a system where the dynamics depend on an unknown parameter within a bounded range and developed strategies for when you have some limited prior information (bayesian) and no information at all (agnostic).
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maxeggl.bsky.social @maxeggl.bsky.social · 29/11/2024
Hello Bluesky! I start off on this platform with a new paper announcement: Two of my papers were recently published: ems.press/journals/rmi... and ems.press/journals/rmi..., they explore approaches to control systems with unknown dynamics. 🧵
ems.press
Optimal agnostic control of unknown linear dynamics in a bounded parameter range | EMS Press
Jacob Carruth, Maximilian F. Eggl, Charles Fefferman, Clarence W. Rowley
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