A parallel map on a rayon pool whose results reach a sequential consumer in input order, with a hard bound on how far the workers run ahead of it. - Softleif/ordair

A performance release. Every hand-written core::arch kernel is now one portable fearless_simd kernel, and the readers, pileup engine, CRAM codecs and writers were profiled and tightened around it. ...

Highlights: The reported beta values might change when updating to rastair 2.2. Methylation beta is now calculated by taking into account both positions of a CpG, meaning only reads containing TG/...

A bilingual daily word game on the AT Protocol. Play today’s puzzle.

Can you beat my score on mu?

This post introduces seqair , a new Rust library for bioinformatics formats I’ve been working on. We’ll look in detail at one of my main design choices here, a columnar store for iterating BAM data, …

In my recent post on Rastair , we looked at some performance best-practices and optimizations for Rastair , a bioinformatics tool that I’m currently working on. One of the slowest parts of the tool is...

string types that are both valid UTF-8 and nul-terminated - Softleif/cstr8

Rastair is a command-line tool to process epigentic sequencing data. It can call genetic variants and DNA methylation simultaneously from Illumina™ 5base and TAPS+.

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