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Koen De Gelas

@kdegelas.bsky.social
161 followers 527 following 47 posts

STA @ 10X Genomics, views my own

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Reposted by Koen De Gelas
10x Genomics @10xgenomics.bsky.social · 29/09/2026
#Atera is now shipping worldwide. Researchers are preparing to put Atera to work across some of biology’s biggest questions, from disease mechanisms and therapeutic response to large-scale cell and tissue atlasing and training AI models of biology: bit.ly/4ACM1FR
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Koen De Gelas @kdegelas.bsky.social · 29/09/2026
🧬 @10xGenomics Atera is shipping! 🧬 Bringing whole transcriptome profiling, subcellular resolution & unprecedented scale to researchers worldwide. We are about to find out how researchers will turn impossible into possible. Only with Atera. The future of spatial biology starts now!
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Koen De Gelas @kdegelas.bsky.social · 14/09/2026
Ready to level up your single cell research? Join 10x Genomics for a 5-day Cyber Week webinar series from single cell basics to high-scale Multiomics, Epi Multiome, and genome-wide CRISPR screening! 🍕 Attend all sessions for a chance to win a Pizza Party! 📅 Oct 12–16, 2026 10xgen.com/25b
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Reposted by Koen De Gelas
10x Genomics @10xgenomics.bsky.social · 26/08/2026
The next breakthrough in your data is waiting in someone else's queue when you could run the analysis yourself. 8 weeks to learn #singlecell and #insitu spatial analysis with 10x pipelines and community tools. Apply now for the Oct. 5th cohort ➡️ bit.ly/4wW1Vs3
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Koen De Gelas @kdegelas.bsky.social · 03/09/2026
Blood collection for single cell made flexible. Throughout the years we have validated multiple preservation methods for blood cells or whole blood. Which one suits your research best? The latest additions include Streck and PaxGene RNA tubes. Join us for our upcoming seminar Sep 22: 10xgen.com/24t
10xgen.com
10x Genomics
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Koen De Gelas @kdegelas.bsky.social · 12/08/2026
Unlocking PAXgene RNA biobanked blood samples for Single-Cell RNA Sequencing PAXgene RNA tubes are compatible with single-cell analysis, bringing major benefits to multi-center studies and sample logistics Flex Apex kb.10xgenomics.com/s/article/Ar... 5 prime VDJ kb.10xgenomics.com/s/article/Ar...
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Reposted by Koen De Gelas
10x Genomics @10xgenomics.bsky.social · 29/07/2026
We’re collaborating with Lausanne University Hospital (CHUV) to advance diagnostic applications of single-cell and spatial technologies for cancer care, using Chromium Flex Apex and Xenium (later: Atera) to identify biomarkers that may support future diagnostics: bit.ly/4bjtC64
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Koen De Gelas @kdegelas.bsky.social · 26/06/2026
Now available as a publication! Subcellular resolution with Visium HD. www.nature.com/articles/s41...
nature.com
Subcellular mRNA localization patterns across tissues resolved with spatial transcriptomics - Nature Communications
Subcellular RNA localization plays a central role in post-transcriptional regulation. Using high-resolution spatial transcriptomics and a computational approach, the study maps intracellular mRNA loca...
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Reposted by Koen De Gelas
10x Genomics @10xgenomics.bsky.social · 11/06/2026
Maximize the discovery power of your toolkit and the impact of your preclinical research with new rat probe sets, enabling #SingleCell and #Spatial analysis of #FFPE tissues with #Flex Apex and #VisiumHD. Learn more here: bit.ly/4dSs9UK
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Koen De Gelas @kdegelas.bsky.social · 30/04/2026
Big news for multiomics: GEM-X technology has arrived for the @10xgenomics.bsky.social Multiome kit. 🧬 Expect to double the cells, superior sensitivity, and a more reliable workflow—supported by an upgraded nuclei isolation kit. Catch the deep dive in our upcoming webinar: 🔗 bit.ly/429MQWK
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10x Genomics
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Koen De Gelas @kdegelas.bsky.social · 22/04/2026
On Wednesday, April 29, the Atera 10x Genomics World Tour arrives in Belgium! > Whole Transcriptome Analysis > Massive Throughput > Single-Cell Sensitivity All in a new subcellular-resolution spatial platform: Atera Be in the front seat of spatial biology, register today: bit.ly/4su0Ypn
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10x Genomics Atera World Tour 2026 | Leuven
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Reposted by Koen De Gelas
10x Genomics @10xgenomics.bsky.social · 20/04/2026
Studying biology has long meant working with fragmented tools. With Atera, for the first time ever, biology can be measured as a complete system in its native context, at scale, removing the constraints that have held spatial biology back: bit.ly/48bYvYF
10x Genomics introduces Atera, a new platform to redefine how biology is measured and understood.Atera removes the trade-offs that have constrained research, unlocking a new era of insight that will transform our understanding of science and human health.Atera delivers whole-transcriptome spatial data with single-cell sensitivity at scale.
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Reposted by Koen De Gelas
Karsten Rippe @karsten-rippe.bsky.social · 20/04/2026
1/ Philipp Mallm from the @dkfz.bsky.social Single-cell Open Lab just broke the news at #AACR26: the first results on colorectal cancer (CRC) tissue analysis with the new Atera spatial transcriptomics platform from @10xgenomics.bsky.social. Is it "making the impossible possible?" 🧵
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Reposted by Koen De Gelas
10x Genomics @10xgenomics.bsky.social · 19/04/2026
Last night we unveiled the impossible. Now we invite you to check out Atera for yourself at booth #3217! Or, if you're not at #AACR26, register for one of our webinars starting 4/21 to get a deeper look into the future of #spatialbiology: bit.ly/4b5SnBx
Uncompromised Spatial: Only on Atera
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Koen De Gelas @kdegelas.bsky.social · 19/04/2026
While there is a lot of momentum in spatial transcriptomics, Atera brings true acceleration. Excited to see how Atera will increase our understanding of biology and help improve human health. Let me know if you want to talk.
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Reposted by Koen De Gelas
Marco Grillo @mgrillo.bsky.social · 12/04/2026
Capturing somatic mutations in single-cell probe-based assays (ie. 10X Flex) is a hard task, especially if you don't know *exactly* the mutations you want to capture, or if your target sequence is a mutational hotspot with many possible alternative alleles. Here's the way we pulled this off. Enjoy!
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Reposted by Koen De Gelas
Koen De Gelas @kdegelas.bsky.social · 28/03/2026
Join us in Leuven to see the (im)possible with your own eyes! Register here, limited seats available: pages.10xgenomics.com/ugm-2026-04-...
pages.10xgenomics.com
10x Genomics World Tour 2026 | Leuven
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Reposted by Koen De Gelas
10x Genomics @10xgenomics.bsky.social · 03/04/2026
The impossible arrives in just two short weeks: where will you be when it does? oin us for our webinar on 4.21 and witness the start of impossible breakthroughs: bit.ly/4sm2KrX #10xGenomics
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Koen De Gelas @kdegelas.bsky.social · 28/03/2026
Join us in Leuven to see the (im)possible with your own eyes! Register here, limited seats available: pages.10xgenomics.com/ugm-2026-04-...
pages.10xgenomics.com
10x Genomics World Tour 2026 | Leuven
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Reposted by Koen De Gelas
Hao Yin @haoyin.bsky.social · 26/03/2026
Spatial Gut-Microbiome MegaTranscriptomics Use in situ polyadenylation on #Visium #StereoSeq to enhance host & bacterial RNA recovery (⏫99-fold) Fresh-frozen🐭GI Non-coding RNAs enriched to gut wall Microorganisms enriched at CRC tumor boundary #NatMicrobiol 2026 www.nature.com/articles/s41...
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Reposted by Koen De Gelas
10x Genomics @10xgenomics.bsky.social · 23/03/2026
Exciting news! Our Epi Multiome assay is getting the GEM-X performance upgrade with incredible benefits across the entire workflow, from more reliable sample prep to higher gene sensitivity and more. Pre-order today > bit.ly/4sZwefD
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Koen De Gelas @kdegelas.bsky.social · 09/03/2026
Every sample has a story. And it could change someone's life. Uncover the biology behind treatment success or failure by profiling FFPE and fixed whole blood samples. Learn how single cell and spatial are revolutionizing biomarker research in cancer, immunology, and neuroscience. bit.ly/40RqhFr
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Reposted by Koen De Gelas
10x Genomics @10xgenomics.bsky.social · 09/03/2026
Welcome to the first edition of #SampleSpotlight! Every week, we’ll highlight a different sample type that works seamlessly with the Flex Apex assay. This week’s spotlight: FFPE tissue. Every sample has a story. Tell them with Flex Apex. Find out more: 10xgen.com/1WD
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Reposted by Koen De Gelas
10x Genomics @10xgenomics.bsky.social · 23/02/2026
From #PCR, to #NGS, to #scRNAseq, yesterday’s pipe dream is today’s standard. Science follows a pattern, after all: first, something’s impossible. Then, it’s indispensable. So what’s next on that list? Join us for a webinar this April to find out. bit.ly/4tJv9tD
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Reposted by Koen De Gelas
10x Genomics @10xgenomics.bsky.social · 03/03/2026
Science, at its core, is about breakthroughs: discovering new methods, finding new answers, and figuring out that the impossible...isn’t. So what will you do when you can achieve the impossible? bit.ly/4rZJ5Ot
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Reposted by Koen De Gelas
10x Genomics @10xgenomics.bsky.social · 20/10/2025
What if you could simply ask your analysis tools for answers? We’re collaborating with Anthropic to make that happen, working to turn #singlecell & #spatial analysis into a natural conversation, not a coding lesson. Learn more > bit.ly/4nkyURZ
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Koen De Gelas @kdegelas.bsky.social · 10/10/2025
This 100%
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Koen De Gelas @kdegelas.bsky.social · 15/09/2025
Another independent benchmarking study, this time on neutrophils. Comparing 10X 3 prime, 10X Flex, Parse Evercode and Hive. www.cell.com/cell-reports...
cell.com
Comparison of single-cell RNA-seq methods to enable transcriptome profiling of neutrophils in clinical samples
Hatje et al. evaluate current fixed single-cell technologies to determine their suitability for measuring the neutrophil transcriptome and their potential for implementation in clinical trials.
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Reposted by Koen De Gelas
Alexandra P @alexanrna.bsky.social · 10/09/2025
1/ First preprint from @jdemeul.bsky.social lab 🥳! We present our new multi-modal single-cell long-read method SPLONGGET (Single-cell Profiling of LONG-read Genome, Epigenome, and Transcriptome)! www.biorxiv.org/content/10.1...
ikea-style logo of splongget
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10x Genomics @10xgenomics.bsky.social · 09/09/2025
Imagine detecting bone marrow disorders without a painful aspiration! The PERIBLOOD clinical trial by CLISEQ Ltd., the Weizmann Institute of Science & Weizmann’s commercial arm Yeda will see if a blood draw & GEM-X #scRNAseq could help develop future diagnostics. bit.ly/46i7TrX
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Reposted by Koen De Gelas
10x Genomics @10xgenomics.bsky.social · 14/08/2025
✨ Join us on August 28 for an educational webinar that covers the #Xenium workflow, including new features of the platform and expert tips and tricks 🔬 Learn more and reserve your spot here: bit.ly/3U2D5FT
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Koen De Gelas @kdegelas.bsky.social · 14/08/2025
Yes, you can use @10xgenomics.bsky.social Xenium high resolution transcriptomics on plants. Jhu et al. wrote a "how-to-guide" with specific protocol modifications. Medicago truncatula roots and nodules FFPE tissue, 480 genes. Check it out here: www.biorxiv.org/content/10.1...
biorxiv.org
Plant-Compatible Xenium In Situ Sequencing: Optimised Protocol for Spatial Transcriptomics in Medicago truncatula Roots and Nodules
Elucidating the spatial and temporal regulation of gene expression during plant organogenesis is crucial for enabling precise crop improvement strategies that incorporate beneficial traits into crops ...
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Koen De Gelas @kdegelas.bsky.social · 07/08/2025
What a cool paper!
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Koen De Gelas @kdegelas.bsky.social · 29/07/2025
New preprint by M4I, Maastricht, The Netherlands integrating high-resolution MALDI-MSI with Xenium single cell spatial transcriptomics on one single tissue section. www.biorxiv.org/content/10.1...
biorxiv.org
One Section, Two Worlds: Single-Cell Integration of MALDI-MSI and Spatial Transcriptomics on the Same Single Tissue Section
Understanding tissue complexity requires spatially resolved multiomic data at single-cell resolution. Here, we present a workflow that integrates high-resolution matrix-assisted laser desorption ioniz...
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Koen De Gelas @kdegelas.bsky.social · 28/07/2025
Want to learn more about high resolution, high plex spatial transcriptomics? New 10X Genomics Xenium educational webinar on Thursday Aug 28, 2025 ⋅ 15:00 – 16:00 (Central European Time - Brussels). Register here: bit.ly/4fjtYKM
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10x Genomics
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Reposted by Koen De Gelas
10x Genomics @10xgenomics.bsky.social · 22/07/2025
New on Xenium: validated & ready-to-use protein panels! Now you can analyze 27 proteins alongside #spatial RNA for multiomic insights into #cancer, #immunology & more. Get a hands-on look with our interactive dataset & then pre-order your assay: bit.ly/4o0896R
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Koen De Gelas @kdegelas.bsky.social · 23/06/2025
Highly recommended read if you are looking into spatial transcriptomic options.
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Reposted by Koen De Gelas
10x Genomics @10xgenomics.bsky.social · 12/06/2025
Join our webinar on the new #VisiumHD 3’ assay to explore spatial transcriptomics and the technical aspects of the platform. This session offers practical insights and examples for both beginners and experienced users looking to optimize spatial experiments. Register at bit.ly/3How6E6
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Koen De Gelas @kdegelas.bsky.social · 12/06/2025
@10xgenomics.bsky.social spatial transcriptomics Visium HD 3 prime assay is shipping! Get whole transcriptome gene expression data at a resolution of 2x2µm. Poly A based, species agnostic. Compatible with short and long read sequencing. Check it out here: www.10xgenomics.com/products/hd-...
10xgenomics.com
Visium HD 3’ - 10x Genomics
Next-generation Visium HD technology–powered assay with whole transcriptome coverage to gather broad information from diverse species.
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Reposted by Koen De Gelas
10x Genomics @10xgenomics.bsky.social · 11/06/2025
We’re shipping the #VisiumHD 3’ assay! Learn how to bring species-agnostic, whole transcriptome spatial analysis at single cell scale to your lab, including new cell segmentation capabilities compatible across all HD products: bit.ly/4mPrGX5
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Ming Tommy Tang @tommytang.bsky.social · 07/06/2025
You’re analyzing 10x Genomics single-cell RNA-seq and notice lots of intronic reads. Wait—wasn’t this a 3′ UMI-based assay for mature mRNA? Let’s unpack why introns show up—and why they matter. 🧵
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Koen De Gelas @kdegelas.bsky.social · 06/06/2025
New @NatureGenetics paper! 🧬🔬 High-res spatial transcriptomics of #CRC reveals distinct macrophage types & T cell interactions. Using Visium HD, this work deepens our understanding of the tumor microenvironment to improve #colorectalcancer treatment. Full paper: www.nature.com/articles/s41...
nature.com
High-definition spatial transcriptomic profiling of immune cell populations in colorectal cancer - Nature Genetics
High-resolution, spatial transcriptomic analysis of colorectal cancers using matched sequencing- and imaging-based methods characterizes immune cells and their interactions with the tumor microenviron...
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Koen De Gelas @kdegelas.bsky.social · 05/06/2025
Introducing the Visium HD 3’ assay, whole transcriptome spatial analysis with 3’ poly(A) capture-based chemistry. Spatial biology of fresh frozen samples from any species De novo discovery, including isoforms, TCRs/BCRs, and SNVs Single cell resolution, new cell segmentation software bit.ly/43ROP2r
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10x Genomics
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10x Genomics @10xgenomics.bsky.social · 23/05/2025
Interested in #spatialtranscriptomics but not sure where to start? Don’t worry, Dr. Porta-Pardo and Daniela Grases wrote the guide for that. Learn how to select the right platform, optimize your experiments, and scale up your studies. Read it now: www.preprints.org/manuscript/2...
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Koen De Gelas @kdegelas.bsky.social · 25/05/2025
New independent single cell benchmarking study by the @fredhutch.bsky.social innovation lab. Check it out! www.biorxiv.org/content/10.1...
biorxiv.org
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Linda Kvastad @kvastad.bsky.social · 22/05/2025
Recently presented our work on how spatial transcriptomics + genetics can reveal putative causal tissue structures for complex traits. 📄 Preprint: doi.org/10.1101/2025... #spatialbiology #genomics #genetics @lifesciences-ge.bsky.social
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10x Genomics @10xgenomics.bsky.social · 09/05/2025
Only a few days left until our webinar on advancing rare disease research on May 13! 🗓️ Whether you are a researcher, clinician, or student, this webinar will provide valuable knowledge and tools to accelerate your research efforts. Register at bit.ly/42yOfWu
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Koen De Gelas @kdegelas.bsky.social · 30/04/2025
That will be me presenting! 😀
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10x Genomics @10xgenomics.bsky.social · 28/04/2025
When high-quality #scRNAseq meets #AI, breakthroughs follow. We’re excited to partner with @arcinstitute.org & Ultima Genomics to grow the Arc Virtual Cell Atlas, an open resource with data from chemical or genetic perturbations, to allow rapid therapeutic target discovery. Read more: bit.ly/42vAd9s
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Koen De Gelas @kdegelas.bsky.social · 19/03/2025
Heading to Antwerp, Belgium to the VIB conference Revolutionizing Next Generation Sequencing. Looking forward to cutting edge science and technology. Come to the @10xgenomics.bsky.social booth if you want to chat about single cell and spatial biology. #RNGS25
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