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Complex structural variant visualization for HiFi sequencing data - PacificBiosciences/SVTopo

Background Structural variants are genomic variants that impact at least 50 nucleotides. Structural variants can play major roles in diversity and human health. Many structural variants are difficult to interpret and understand with existing visualization tools, especially when comprised of inverted sequences or multiple breakend pairs. Results We present SVTopo, a tool to visualize germline structural variants with supporting evidence from high-accuracy long reads in easily understood figures. We include examples of 101 visually complex structural variants from seven unrelated human genomes, manually assigned to ten categories. These demonstrate a broad spectrum of rearrangement and showcase the frequency of complex structural variants in human genomes. Conclusions SVTopo shows breakpoint evidence in ways that aid reasoning about the impact of multi-breakpoint rearrangements. The images created aid human reasoning about the result of structural variation on gene and regulatory regions.

A tool for sniffing out the differences in vari-Ants - PacificBiosciences/aardvark

Complex structural variant visualization for HiFi sequencing data - PacificBiosciences/SVTopo

Structural variants are genomic variants that impact at least 50 nucleotides and can play major roles in diversity and human health. Many structural variants are complex multi-breakpoint rearrangement...

AbstractMotivation. Structural variants (SVs) play an important role in evolutionary and functional genomics but are challenging to characterize. High-accu

The human gut microbiome is associated with various forms of acute malnutrition, but current microbiome approaches are limited in resolution, often focused on c

A phase-aware pharmacogenomic diplotyper for PacBio datasets - PacificBiosciences/pb-StarPhase

Priced at just $169,000 Vega is designed to make highly accurate long-read sequencing accessible to any laboratory Translations:  Japanese  |  Chinese  |  Korean MENLO PARK, Calif., Nov. 06, 2024 (GLO...