iiinova — where your digital self keeps evolving

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Virginie Uhlmann @virginieuhlmann.bsky.social · 7h

Are you a biologist working with microscopy images? A computer scientist wanting to work with microscopy data? Their boss??? None of these, but curious how AI has transformed microscopy image analysis? 🔬🤖 This one's for you: 📄 doi.org/10.1146/annu... More in the thread! 🧵

doi.org

From Pixels to Discovery: Microscopy Image Analysis in the Age of Artificial Intelligence

Modern microscopy generates data volumes that far exceed human analytical capacity. Over the past decade, artificial intelligence (AI) has transformed microscopy image analysis into an engine for quan...

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jmutterer.bsky.social @jmutterer.bsky.social · 01/10/2026

Except for the rules we, as a community, have set for ourselves

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jmutterer.bsky.social @jmutterer.bsky.social · 01/10/2026

Except for the rules we, as a community, have set for ourselves

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Sebi @sebi06.bsky.social · 30/09/2026

Hi all, prototype of a napari-zenapi-streaming plugin is working using @zeiss-microscopy.bsky.social and @napari.org. - stream pixels from ZEN into multi-dim array and display live - stream pixels from ZEN directly into OME-ZARR (see video) For viewing I used: find-nuclei.github.io

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jmutterer.bsky.social @jmutterer.bsky.social · 30/09/2026

Very impressive ! I didn't find a way to bookmark a paricular viewer state, is that currently possible?

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jmutterer.bsky.social @jmutterer.bsky.social · 29/09/2026

Because the source region is kept in the many panel metadata, it's now easy to highlight it in the original image in FigSpace. forum.image.sc/t/fig-space-...

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UK-BIAS @uk-bias.bsky.social · 17/09/2026

Drowning in Image data? Know there’s a better way to analyse it, but don’t know where to start? 📣 UK-BIAS to the rescue! 👩‍💻🧑‍💻👨‍💻We’re the first dedicated #BioImageAnalysis service in the UK-node of @eurobioimaging.bsky.social bringing together specialists from ten UK institutions. 👩‍💻🧑‍💻👨‍💻

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jmutterer.bsky.social @jmutterer.bsky.social · 29/09/2026

Because the source region is kept in the many panel metadata, it's now easy to highlight it in the original image in FigSpace. forum.image.sc/t/fig-space-...

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IMAG'IC @imag-ic.bsky.social · 29/09/2026

The IMAG'IC team is back to offer you the "Introduction to the Use of #ImageJ" training course. 22 October 2026 (English) 4 November 2026 (French) institutcochin.fr/formations/f... @institutcochin.bsky.social @upcite.bsky.social @inserm.fr @cnrs.fr

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jmutterer.bsky.social @jmutterer.bsky.social · 26/09/2026

Cherry and chesnut leaves backlit by the evening sun.

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Christophe 🔬 Leterrier @christlet.bsky.social · 22/09/2026

From the new info my bet is fluo labeling inference pushed to 11. Hallucinating nonsensical DAPI nuclei, mitochondria stain, membrane labeling from a kind of phase contrast image: wrong localization, wrong scale, wrong movement. Keeping this movie as SWiM winner is a disgrace to the competition

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Gaëlle Recher @gaellerecher.bsky.social · 20/09/2026

Very soon, members of the @gdrimabio.bsky.social will fly to Burundi with this suitcase full of microscopes 🔬 + 🩷 --> ✈️ --> 🇧🇮

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Stratocore @stratocore.bsky.social · 18/09/2026

The Spencer Shorte Legacy Award honours Spencer’s legacy by recognising those who support, mentor and uplift the scientific community. Spencer, co-founder of Stratocore, is remembered for his scientific contributions, warmth, humility & commitment to others. Nominations: abrf.org/awards/abrf-...

abrf.org

Spencer Shorte Legacy Award | ABRF

Spencer Shorte Legacy Award: Honoring a Legacy of Character Call for Nominations The Spencer Shorte Legacy Award Selection Committee, with support from the CTLS Board of Directors and the ABRF Executi...

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jmutterer.bsky.social @jmutterer.bsky.social · 08/09/2026

Most requested feature: applying the same viewfinder crop to several panels is now built in FigSpace.

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jmutterer.bsky.social @jmutterer.bsky.social · 08/09/2026

Most requested feature: applying the same viewfinder crop to several panels is now built in FigSpace.

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Lucien Hinderling @lhinderling.bsky.social · 07/09/2026

fiber immersion 3D printing, based on the open micro-manipulator project www.youtube.com/watch?v=UvV2...

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Jean-Yves Tinevez @jytinevez.bsky.social · 03/09/2026

New version of #Mastodon-SC, the Fiji plugin to track and lineage cells in gigantic movies! What is Mastodon? 👉 in the preprint linked to the quote post What's new? 👇

liveimagetrackingtools.org

geff

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Juan Nunez-Iglesias @jni.fosstodon.org.ap.brid.gy · 02/09/2026

Job alert! This would be right up my alley which means it might be up *your* alley if you follow me: Software Engineer (Data Specialist) at the Australian National University's Centre for Advanced Microscopy: au.seek.com/job/94226839 #GetFediHired

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jmutterer.bsky.social @jmutterer.bsky.social · 28/08/2026

I've made a video about Fig_Space, the next version of FigureJ. It has nice new features, I hope you like it. youtu.be/bTKcXN4p-JM

youtu.be

FigSpace Fiji plugin demo

YouTube video by jerome mutterer

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jmutterer.bsky.social @jmutterer.bsky.social · 30/08/2026

Hi Jan! Check out FigSpace, it's a great inkscape companion 😊 forum.image.sc/t/fig-space-...

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jmutterer.bsky.social @jmutterer.bsky.social · 28/08/2026

I've made a video about Fig_Space, the next version of FigureJ. It has nice new features, I hope you like it. youtu.be/bTKcXN4p-JM

youtu.be

FigSpace Fiji plugin demo

YouTube video by jerome mutterer

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Marco Dalla Vecchia @marcodv.bsky.social · 27/08/2026

Interested in image analysis and a service role in a dynamic and growing facility? Come and joy our image analysis team! Feel free to reach out for any questions or doubts. ista.ac.at/en/job/?titl...

ista.ac.at

Job details

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Sebi @sebi06.bsky.social · 02/08/2026

czitools 0.20.1 is out! 🎉 Improved CZI/HCS → OME-Zarr export, lazy Dask reading, lighter imports, better napari notebook support, and NDV visualization. Github: github.com/sebi06/czito... PyPi: pypi.org/project/czit...

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eurobioimaging.bsky.social @eurobioimaging.bsky.social · 15/07/2026

At the next #NGFFCafe, Marvin Albert (ETH Zurich) will present 𝗺𝘂𝗹𝘁𝗶𝘃𝗶𝗲𝘄-𝘀𝘁𝗶𝘁𝗰𝗵𝗲𝗿, a Python package for scalable stitching/alignment/fusion of multi-view, tiled & multimodal image acquisitions. Join us! 🗓️ Thursday, July 30 🕚️ 11 am CEST 📍 Online Register⤵️ us02web.zoom.us/meeting/regi...

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Gaëlle Letort @gaellel.bsky.social · 10/07/2026

I'm super happy to be awarded the cnrs cristal medal dedicated to research support staff🥳🏅!! Even more delighted by the reactions to the announcement, huge thanks to all, I m lucky to work within such a nice community🫶!! Especially the welcoming amazing subgroup of core facility bioimage analysts🤩

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Jean-Yves Tinevez @jytinevez.bsky.social · 09/07/2026

And also, for the story: www.iledefrance-meudon.cnrs.fr/fr/personne/...

iledefrance-meudon.cnrs.fr

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Helena Klara Jambor @helenajambor.bsky.social · 19/06/2026

What a week! My first Points of View was published @natmethods.nature.com Happy to start the series in 🏳️‍🌈 month with "On Color scales and the birth of Viridis" - looks good, allows naming of regions, AND is perceptually uniform 🎁 rdcu.be/fnPhk www.nature.com/articles/s41... #dataviz

A mountain ridge shown in different color sclales. Picture:
Andres Passwirth - Own work, CC BY-SA 3.0, https://commons.wikimedia.org/w/index.php?curid=17166331

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Ulrike Boehm @ulrikeboehm.bsky.social · 11/06/2026

I’m thrilled to announce that I am the voice behind a new @zeissgroup.bsky.social campaign focused on photonics—discover more about this exciting field and ZEISS’s pioneering role in it! 😀👉 www.zeiss.com/corporate/en/c/stories/insights/photonics.html

zeiss.com

Technological innovation: Photonics & AI | ZEISS

Discover how ZEISS is advancing artificial intelligence through technological innovations and photonics, enabling advanced microchips and practical AI applications in science, medicine, and industry.

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GloBIAS @globias.bsky.social · 08/06/2026

Are you facing challenges with image analysis? Get expert advice in next GloBIAS Free Help event on 22–26 June 2026 Apply until 17 June 2026 for a 40 min one-to-one online session Learn more at: www.globias.org/activities/g... #ImageAnalysis #globias-free-help

https://www.globias.org/activities/globias-free-help

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GdR ImaBio 🔬 @gdrimabio.bsky.social · 08/06/2026

🔬 Les rencontres 2026 du GdR Imabio, c'est dès demain et jusqu'au 12 juin à l' #ENSParis-Saclay ! 👉 Imagerie multi-échelle, imagerie en profondeur, imagerie quantitative, microscopie et intelligence artificielle... 🔗 Le programme complet : imabio-cnrs.fr/rencontre-im... #rencontresgdrimabio2026

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jmutterer.bsky.social @jmutterer.bsky.social · 05/06/2026

Thanks Marie for having us. How many EnderScopes are too many?

Happy oysters starter downtown Roscoff with Erwan and Hugo

The messy workshop space at 1am. How many new EnderScopes do you see?

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Marie Walde 🌊🦠🔬 @mariescopy.bsky.social · 05/06/2026

Hacking spirit in Roscoff during our "Smart DIY Microscopy for Marine Biology" inspired by #MIFOBIO last year. We jointly assembled new #EnderScope systems for marine research. 🌊🔬💻 Big thanks to 💙EnderTeam 💙@embrc-france.bsky.social 💙@gdrimabio.bsky.social 💙@sbroscoff.bsky.social

A group of people listening to a presentation

An EnderScope with a multiwell dish containing small bits of different algae

An EnderScope next to a big screen showing python code

A group of scientists visiting the historic aquarium of the Station Biologique de Roscoff

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Virginie Uhlmann @virginieuhlmann.bsky.social · 01/06/2026

📢📢 We are hiring a Bioimage Analyst at the BioVisionCenter! 📢📢 Join our collaboration with the Flow Cytometry Facility and contribute back to the international efforts on open standards for bioimaging data! More information here, reach out if you have any question: jobs.uzh.ch/job-vacancie...

jobs.uzh.ch

UZH: Bioimage Analyst

The University of Zurich is the largest university in Switzerland and one of the most prominent in Europe. For research purposes the Biovision Center and Flow Cytometry Facility offer services to supp...

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Jean-Yves Tinevez @jytinevez.bsky.social · 28/05/2026

Another outcome from the Appose processing hackathon: Cellpose simple tile processing in Fiji, with #imglib2 and #appose only. With @gaellel.bsky.social and @strigaud.bsky.social

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OpenCV @opencv.bsky.social · 28/05/2026

OpenCV 5 is coming, we swear, and in this episode we'll get an update from the team on what you can expect in the biggest release of OpenCV ever! With OpenCV 5 your vision stack is faster, more optimized, and easier to use than ever. Watch live at 9: youtube.com/live/me4ylB8...

youtube.com

OpenCV 5 Preview

YouTube video by OpenCV

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turrigiano.bsky.social @turrigiano.bsky.social · 26/05/2026

Amazing job opportunity at Brandeis - we are looking for a new manager of our Light Microscopy Facility! Cool instruments, a great community to work with, lots of opportunities for growth - please circulate! brandeis.wd5.myworkdayjobs.com/en-US/Jobs/j...

brandeis.wd5.myworkdayjobs.com

Light Microscopy Facility Manager

The main purpose of this job is to bring cutting-edge light microscopy research approaches to Brandeis researchers and oversee the day-to-day operations of the Brandeis light microscopy facility. The ...

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Beth Cimini 🔬💻📊 @bethcimini.bsky.social · 07/05/2026

The Cimini lab is hiring for both postdocs and interns! The postdoc role will cover bioimage analysis projects and educational material creation; the intern will be working on our Bilayers project for helping distribute and access deep learning tools for bioimage analysis. Click below to learn more!

forum.image.sc

Postdoctoral Associate and Data Science Intern roles - Broad Institute, Cambridge MA USA

The Broad Institute Imaging Platform (the team behind CellProfiler, Piximi, and Bilayers) is currently hiring for postdoctoral and intern roles! Postdoc role: we are looking for 1-2 candidates who ha...

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jmutterer.bsky.social @jmutterer.bsky.social · 08/05/2026

👏🏆 @emiglietta.bsky.social reports finding the golden egg in Doom for ImageJ, illustrating bioimage analysts' perseverance in navigating the maze of bioimage tools. Well done!

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Damian Dalle Nogare @damiandn.bsky.social · 28/04/2026

Roughly two weeks (until May 15th) left to apply and join our team! Bioimage Analyst: careers.humantechnopole.it/job/Bioimage... Rsearch Software Engineer: careers.humantechnopole.it/job/Research...

careers.humantechnopole.it

Fondazione Human Technopole - Viale Rita Levi-Montalcini, 1 - Area MIND - 20157 Milano Italy - C.F. 97821360159 - PEC: htechnopole@pec.fondazioneht.it

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Corinne Esquibel @corinneesquibel.bsky.social · 21/04/2026

We are still accepting applications for an image analyst within the Optical Imaging Core at Van Andel Institute. If you know anyone that is looking for a career in image analysis, please encourage them to apply! vai.wd1.myworkdayjobs.com/en-US/VAICar...

vai.wd1.myworkdayjobs.com

Image Analyst (Core Bioinformatician)

Van Andel Institute (VAI), a world-class biomedical research institute, located in Grand Rapids, Michigan, is dedicated to improving human health. We are pioneers in the fight against cancer, Parkinso...

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