iiinova — where your digital self keeps evolving

Reposted by Icy

BIAUnit @biaunit.bsky.social · 23/06/2025

📌 Tracking cell dynamics just got smarter! We use Bayesian linking algorithms — KOFT and SKT — implemented in our ByoTrack 🐍 Python library. Kalman filters + optical flow for links & mitosis detection. [PDF] celltrackingchallenge.net #CellTracking #Python #KalmanFilter #OpticalFlow #OpenScience

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GdR ImaBio 🔬 @gdrimabio.bsky.social · 03/06/2025

⏰ We've just passed the 250 pre-registration mark for #Mifobio2025 ! There's only one week left before the deadline, which won't be extended given the current numbers ! 👉 imabio-cnrs.fr/mifobio-2025... @cnrsingenierie.bsky.social @cnrsbiologie.bsky.social @cnrs-inist.bsky.social @cnrs.fr

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Reposted by Icy

Institut Pasteur Education @pasteuredu.bsky.social · 28/05/2025

🔬Le Cours Pasteur NEUBIAS propose une formation avancée en analyse d’images biologiques intégrant théorie, pratique et IA. Lina El Hajji, post-doc à Sorbonne Université, partage son expérience. La prochaine édition aura lieu en juin 2026 sous le nom « Advanced Bioimage Analysis with AI »

youtube.com

Bioimage Analysis – Retour sur le Cours Pasteur NEUBIAS

YouTube video by Institut Pasteur EDUCATION

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Reposted by Icy

BIAUnit @biaunit.bsky.social · 20/05/2025

🚨Paper alert! 🚀 We presented SINETRA at #ISBI2025 in Houston A new simulator for generating realistic 2D/3D neuron tracking data in moving animals like Hydra vulgaris 🧠 Helps test and improve tracking algorithms under tough conditions 📄 dx.doi.org/10.1109/ISBI... #celltracking #syntheticdata #ISBI

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BIAUnit @biaunit.bsky.social · 31/03/2025

Exciting news! 🎉 We propose Spatiopath, a null-hypothesis framework for cell-cell & cell-tumor interactions that distinguishes statistically significant immune cell associations from random ones.📊🔬 Check it out:😊 www.nature.com/articles/s41... #statistics #immunology #oncology

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Reposted by Icy

BIAUnit @biaunit.bsky.social · 13/01/2025

👉To classify the dynamic behaviors governing biological particles, we developed a neural network model based on geometric trajectory descriptors and a framework to robustly detect dynamic changes in compound trajectories. #simulation #activationpathwayofreceptorsCCR5 👉 hal.science/hal-04870375v1

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Jean-Yves Tinevez @jytinevez.bsky.social · 13/03/2025

The Pasteur microscopy course #PAFM is running full speed!

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Reposted by Icy

BIAUnit @biaunit.bsky.social · 25/11/2024

The stiffness of cells and their nuclei is a biomarker of several pathologies, yet is usually reduced to a single value. In our last paper, we propose a method to estimate heterogeneous maps of stiffness inside freely moving cells using only fluorescence imaging. ieeexplore.ieee.org/document/107...

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Icy @icybioimaging.bsky.social · 23/11/2024

JDLL: a library to run deep learning models on Java bioimage informatics platforms. @jytinevez.bsky.social @deepIcy_IP @deepImageJ www.nature.com/articles/s41...

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Icy @icybioimaging.bsky.social · 22/11/2024

💡 BioFlow is an image-based method able to extract velocities, pressure and forces inside living cells observed in fluorescence microscopy 🔬🖥️ icy.bioimageanalysis.org/plugin/biofl... 👉 The lateral movement of fan-shaped amoeboid cells is not pressure-driven ‼️

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