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Jose Espejo Valle-Inclan

@jevalleinclan.bsky.social
354 followers 1.3K following 2 posts

Cancer genomics @ Botton-Champalimaud Pancreatic Cancer Centre || Now 🇵🇹, past 🇬🇧 🇳🇱 🇪🇸

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Jose Espejo Valle-Inclan @jevalleinclan.bsky.social · 29/05/2025
And a great comms piece as usual by @ebi.embl.org
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Jose Espejo Valle-Inclan @jevalleinclan.bsky.social · 29/05/2025
SAVANA is out in the wild 🦁! #SAVANA detects haplotype-resolved somatic structural variants (SVs), copy number aberrations, and calculates tumour purity and ploidy using long-read data. Together with it, a robust, data-driven benchmarking effort! Below is a thread with all the advantages 👇
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Nature @nature.com · 12/03/2025
Nature research paper: MYC ecDNA promotes intratumour heterogeneity and plasticity in PDAC go.nature.com/41IPJwX
go.nature.com
MYC ecDNA promotes intratumour heterogeneity and plasticity in PDAC - Nature
In a model of pancreatic ductal adenocarcinoma, extrachromosomal DNAs are shown to be a source of high-level focal amplification driving MYC heterogeneity and phenotypic adaptation.
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Champalimaud Foundation @champalimaudf.bsky.social · 12/03/2025
🧬 Novo estudo da #UniversidadeDeVerona, @uofglasgow.bsky.social & @champalimaudf.bsky.social revela como o #DNAExtracromossómico (#ecDNA) ajuda os tumores pancreáticos a resistirem aos tratamentos e a sobreviverem. 🔍 O resumo 👉🔗 shorturl.at/iJF8J 📄 O artigo 👉🔗 bit.ly/4ipKRUA
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Lisa Situ @lisasitu.bsky.social · 06/02/2025
🧬 #ResearchWatch: Loss–Translocation–Amplification #Chromothripsis Drives #Osteosarcoma Evolution, a summary of the study by @jevalleinclan.bsky.social, Solange De Noon, Adrienne Flanagan, Isidro Cortes-Ciriano, and colleagues @ucl.ac.uk @ebi.embl.org @uclnews.bsky.social doi.org/10.1158/2159...
doi.org
Loss–Translocation–Amplification Chromothripsis Drives Osteosarcoma Evolution
Main Finding: High-grade osteosarcomas frequently exhibit a loss–translocation–amplification (LTA) pattern of chromothripsis that inactivates TP53 and amplifies oncogenes.Concept: Ongoing chromothrips...
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Reposted by Jose Espejo Valle-Inclan
EL PAÍS @elpais.com · 14/01/2025
Un equipo de científicos revela el mecanismo del osteosarcoma, un agresivo cáncer que afecta a niños y adolescentes y que se extiende desde los huesos: “Hay cromosomas que son como Frankenstein”
elpais.com
Descubierto un terremoto en el ADN que provoca un cáncer agresivo en niños y adolescentes
Un equipo de científicos revela el mecanismo del osteosarcoma, un tumor que se extiende desde los huesos: “Hay cromosomas que son como Frankenstein”
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EMBL-EBI @ebi.embl.org · 14/01/2025
Osteosarcoma, an aggressive bone cancer, most commonly affects children and young adults. New research solves the mystery of what drives the genomic rearrangements causing the aggressive development and evolution of osteosarcoma tumours. www.ebi.ac.uk/about/news/r... 🧪
ebi.ac.uk
Researchers uncover what drives aggressive bone cancer
Study identifies a novel mechanism driving osteosarcoma and provides insights to help predict patient outcomes.
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Reposted by Jose Espejo Valle-Inclan
Stephen Turner @stephenturner.us · 20/11/2024
Expand your Bluesky network with R: Find people followed by the people you follow, but who you don't follow, using R and the atrrr package blog.stephenturner.us/p/expand-you... #Rstats
blog.stephenturner.us
Expand your Bluesky network with R
Find people followed by the people you follow, but who you don't follow, using R and the atrrr package
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EMBL-EBI @ebi.embl.org · 19/11/2024
Not enough bioinformatics in your Bluesky feed? We’ve got you covered. Follow us for our latest news, exciting life science research, updates from our data resources, new tools and training resources. Haven't heard of EMBL-EBI? Take a look at what we’re working on. www.ebi.ac.uk/about/our-im...
ebi.ac.uk
Our impact
We provide open data that helps scientists understand life and that informs solutions to real-world problems, such as infectious diseases, climate change and food security.
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The Guardian @theguardian.com · 20/11/2024
Portugal is rapidly losing its young people. Will this new scheme convince them to stay? | Adam Almeida
dlvr.it
Portugal is rapidly losing its young people. Will this new scheme convince them to stay? | Adam Almeida
Studying in Lisbon, I found most of my peers were planning to emigrate. Now the government is turning to taxes to stop the brain drain In the autumn of 2018, I moved to Lisbon for a month-long course at the Universidade de Lisboa. I struggled to find any…
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Wolfgang Huber @wkhuber.bsky.social · 19/11/2024
Something that's been bugging me for a while in bioinformatics data analysis is this overreliance on packages, workflows and what's been called "cargo cult science". Can we have more conceptual thinking, more theory? Asking for what we really want to achieve and what we need to do gets us there.
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Fran Martínez-Jiménez @franmj88.bsky.social · 19/11/2024
I want to open my Blusky by reminding that we are looking for a motivated PhD student to join our team at VHIO for a very exciting computational immuno-oncology project. Check out the position and apply! 💻🧬 #PhD #CompImmunoGenomics vhio.net/vhio-phd-opp...
vhio.net
PhD Fellowships - VHIO
Join us @ VHIO for a PhD! Eligibility criteria  | How to apply |  Selection process  |  Fellowships Available  |...
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