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Jakob Schuster

@jakobschuster.bsky.social
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Reposted by Jakob Schuster
Rob Patro @robp.bsky.social · 27/11/2025
Woot! The mim preprint is live now. www.biorxiv.org/content/10.1... Happy Thanksgiving! Cc @curiouscoding.nl
biorxiv.org
mim: A lightweight auxiliary index to enable fast, parallel, gzipped FASTQ parsing
The FASTQ file format is the lingua franca of primary data distribution and processing across most of bioinformatics. Over time, the compression, storage, transmission, and decompression of gzip compr...
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Reposted by Jakob Schuster
bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 11/11/2025
Powerful read processing with matchbox www.biorxiv.org/content/10.1101/202…
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Reposted by Jakob Schuster
Quentin Gouil @qgouil.bsky.social · 18/11/2025
Excited to share matchbox. It’s super fast and versatile to search for patterns in reads, I’m curious to see all the uses it will find! Congrats to @jakobschuster.bsky.social , co-supervisors @michaelbclark.bsky.social @mritchieau.bsky.social and team! www.biorxiv.org/content/10.1...
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