iiinova — where your digital self keeps evolving

Dr. Jaimi Gray @jaimiagray.bsky.social · 30/06/2026

1 week till @sebiology.bsky.social in Florence! Join me for my keynote for symposium A12: "Digital Resilience: Immortalising Biodiversity Through 3D Anatomical Models". Take a walk through the long grass of 3D imaging with me & collect all of my critter cards along the way! 4pm Tues in Modulo 2.1 🩻

A black background with green cartoon at the bottom of the image. Above the grass are 7 card backs that are styled purple with the radiation symbol in the middle. A "critter card" for the spiny lumpsucker in the top middle of the image gives access to a 3D model via tiny link and QR code. Surrounding the critter cards are silhouettes of 7 other 3D models that represent other 3D models in the set.

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Dr. Jaimi Gray @jaimiagray.bsky.social · 18/05/2026

The Pacific spiny lumpsucker, an inefficient swimmer but a highly efficient suction cup. The pelvic fins have evolved into a strong suction disk on the belly, giving it the ability to anchor itself to substrates. Plate-like structures called "tubercles" provide defense against predators.

A 3D model made from a micro-CT scan of a Pacific spiny lumpsucker, with the skeleton rendered in light brown/beige and the tubercles rendered in a gradient of colors, beginning with pink at the head, and changing from purple, to blue, to teal as you move towards the tail. Outline of the body is rendered in white and transparent. Shown in antero-lateral view (top), anterior view (bottom left), and left lateral view of the head (bottom right). Scale bar at the bottom right is 5 mm.

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Dr. Jaimi Gray @jaimiagray.bsky.social · 28/04/2026

This yellow spotted river turtle from the Florida Museum of Natural History was collected in Colombia in 1957. It's likely it was exploited by the pet trade, as it was once common for people to drill holes in the marginal scutes of the shell to tether the turtle & stop it from wandering away (1/2)

3D Renderings of a contrast-enhanced CT scan of a yellow spotted river turtle, colored in brown (least dense tissues), green (medium density tissues), and yellow (high density tissues). A dorsal view is shown at the top of the image, and a ventral view is shown at the bottom of the image.

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William B. Ludt, PhD @planet-of-fishes.bsky.social · 10/03/2026

Are you a student who wants to visit the NHMLA for your research? Do you advise or know a student who would benefit from visiting our collections? Well, there are three weeks left to apply for the NHMLA Student Collections Award. Help spread the word!

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Alice Leavey @leaveylab.bsky.social · 27/02/2026

Just one week to get your abstracts in for A12 - "Digital Resilience: Immortalising biodiversity through 3D anatomical models"! You'll present alongside our keynote speaker @jaimiagray.bsky.social who will talk about how making CT data and derivatives FAIR can level the playing field for biologists.

sebiology.org

SEB Annual Conference Florence 2026

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Dr. Karly E. Cohen @karlycohen.bsky.social · 06/02/2026

Priority deadline (Feb 16) for this years Fish Class at Friday Harbor is coming up quick! Get your applications in for what will be an amazing summer filled with great science, people, and tools! Financial aid is available!! @cmdonatelli.bsky.social @fishguy.bsky.social @karlycohen.bsky.social

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Adam Summers @fishguy.bsky.social · 28/01/2026

Want to do a postdoc at Friday Harbor Labs? We have two positions open. Apply by March 1st. I am happy to discuss potential projects with fish people. apply.interfolio.com/180092 🧪

A view of Friday Harbor Labs dock in the early morning with blowing sea fog in the background.

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SICB journals @sicbjournals.bsky.social · 11/12/2025

This Thursday's IOB cover spotlight is on The Diffusion Diaries: Diffusible Iodine-Based Contrast-Enhanced Computed #Tomography for #Vertebrate Natural History #Specimens @jaimiagray.bsky.social Gray , et al doi.org/10.1093/iob/... #morphology #science #biology #vertebrates

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Aaron Griffing @aaronhgriffing.bsky.social · 14/11/2025

New paper out in @devdynamics.bsky.social on lizard lung development! Project co-led w/ Kaleb Hill and also w/ @tonygamble.bsky.social @shylonatasha.bsky.social @aussiebiologist.bsky.social @bezbez.bsky.social @celestemnelson.bsky.social anatomypubs.onlinelibrary.wiley.com/doi/10.1002/...

brightfield images of three lizard embryos of approximately the same developmental stage. Below each embryo image is an immunofluorescence image labeling E-cadherin (green) and alpha-smooth muscle actin (magenta) of their developing lungs

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Dr. Jaimi Gray @jaimiagray.bsky.social · 29/10/2025

Excited to be a co-author on this one in @currentbiology.bsky.social! @tillramm.bsky.social did a fantastic job bringing it all together. A mountain dragon was the *very first* CT scan I ever worked on as an undergraduate, so it holds a special place in my ❤️

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Dr. Jaimi Gray @jaimiagray.bsky.social · 13/10/2025

When you visit Friday Harbor Labs, @fishguy.bsky.social always has cool fish to discuss 🐟 Last week we pondered the horned searobin (Bellator militaris), & what its spines could be for. CT scan available on MorphoSource for you to explore www.morphosource.org/media/000027546 Images made in 3D Slicer

Colored rendering of a CT scan of Bellator militaris, in anterior and anterolateral view

Colored rendering of a CT scan of Bellator militaris, in dorsal, left lateral, and ventral views

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Adam Summers @fishguy.bsky.social · 11/10/2025

Just wrapped up a week of SlicerMorph/MorphoDepot/MorphoCloud work with @jaimiagray.bsky.social, @cmdonatelli.bsky.social and a great team of folks. This is Enophrys taurina with a damaged preopercular spine. Fighting or defense? 🧪🐡

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Dr. Jaimi Gray @jaimiagray.bsky.social · 03/10/2025

"What makes us human, I think, is an ability to ask questions, a consequence of our sophisticated spoken language" - J. Goodall. This #oVertTCN chimpanzee CT scan is available for exploration on MorphoSource: www.morphosource.org/concern/medi...

3D rendering of a whole body CT scan of a chimpanzee, showing the skeleton with a density map where yellow = most dense material, blue = medium density material, purple = low density material. Top shows 3 images of the whole body rendered in a series rotating from front to back. Bottom shows a close up of the head and shoulders. The "oVert" symbol is in the top right corner. In the bottom left corner it reads "Pan troglodytes; YPM:VZ:015959; MorphoSource ID: 0000058004"

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Dr. Jaimi Gray @jaimiagray.bsky.social · 09/09/2025

Meet the newest species of Brazilian flea-toad 🐸 Brachycephalus nanicus! 🐸 B. nanicus is <1cm long & dwells under the leaf litter in the cloud forests of Serro do Mar, southeastern Brazil I CT scanned this specimen for the osteological description Out today in Zootaxa: mapress.com/zt/article/v...

3D rendering of a CT scan of Brachycephalus nanicus, with the skeleton rendered in light brown and skin rendered in transparent purple. Top = dorsal view, bottom = ventral view. In the bottom right corner there is an image of the frog (a small brown frog) sitting on a coin.

3D renderings of the skeleton of Brachycephalus nanicus, rendered in light brown. Top left = whole skeleton in dorsal (left) and ventral (right) views. Top right = skull in dorsal (left), ventral (middle), and right lateral (right) views. Bottom from left to right, 3D renderings of the hand, foot, spinal column, and should girdle (top) / pelvic girdle (right lateral).

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Dr. Jaimi Gray @jaimiagray.bsky.social · 14/08/2025

Hey it's #WorldLizardDay 🦎 Here's one of my faves & one I saw *a lot* of growing up in rural Australia. Tiliqua rugosa has many common names, but where I'm from we call them "sleepy lizard" or "stumpy tail". Download the #oVertTCN CT scan from MorphoSource here: www.morphosource.org/concern/medi...

A 3D rendering of a CT scan of Tiliqua rugosa, facing the front (top) and facing the back (bottom), rendered in yellow (most dense parts), pink (medium density parts), and blue (least dense parts).

A 3D rendering of a CT scan of the head Tiliqua rugosa, in dorsal view (top) and ventral view (bottom), rendered in yellow (most dense parts), pink (medium density parts), and blue (least dense parts).

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Dr. Jaimi Gray @jaimiagray.bsky.social · 11/08/2025

Climbing into my #ColorsOfSkullAnatomy collection: a veiled chameleon (Chamaeleo calyptratus) 🦎 this large male was getting up there in age when he was collected, as shown by his worn down teeth and bone pathologies. Find the model here: www.graysvertebrateanatomy.com/veiled-chame...

Image of a 3D model of a veiled chameleon skull, with bones colored to demonstrate skull anatomy, on a black background. Model is shown in lateral (top), antero-lateral (middle), and anterior (bottom) views. A small image of the whole museum specimen is shown with a scale bar in the bottom right corner.

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Dr. Jaimi Gray @jaimiagray.bsky.social · 27/07/2025

Say hello to Florida's newest established species, Typhlonectes natans - the Rio Cauca Caecilian! You can read about their relative abundance, distribution, & natural history, in our brand new paper: journals.ku.edu/reptilesanda... Here is one individual I CT scanned that had 7 babies inside!

A 3d rendering of a CT scan of a Rio Cauca caecilian with transparent body and bone colored skeleton, showing 7 baby caecilians inside, each rendered in a different color - counter-clockwise from tail to head - red, orange, yellow, green, light blue, dark blue, purple.

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Dr. Jaimi Gray @jaimiagray.bsky.social · 16/07/2025

It's #WorldSnakeDay so here is a green tree python I CT scanned for #oVertTCN 🐍 Get the datasets (both #diceCT and regular CT) on MorphoSource: www.morphosource.org/concern/biol... 💚💚💚

3D rendering of a diceCT scan of a coiled green tree python, rendered in bright green. Slightly overlapping is a 3D rendering of the python's skeleton, rendered in a light brown color.

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Milton Tan @mtanichthys.bsky.social · 12/07/2025

Now Jaimi Gray is up! "The Diffusion Diaries: Using diffusible iodine-bases contrast-enhanced Computed Tomography for High-throughout imaging of 3D anatomy of natural history specimens" #JMIH25 #ASIHin3D

The Diffusion Diaries: Using diffusible iodine-bases contrast-enhanced Computed Tomography for High-throughout imaging of 3D anatomy of natural history specimens

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Dr. Jaimi Gray @jaimiagray.bsky.social · 12/07/2025

Catch me at 10.30am in the Science in 3D #ASIHin3D symposium at #JMIH25 today! Amphibians 🐸 Reptiles 🦎 CT scanning ☢️ Iodine 🧪 Anatomy 🧠

Display slide that reads "Joint meeting of Ichthyologists and Herpetologists

Saturday July 12, 2025 / 10.30am - 10.45

Session with big attendance

'28.1 | the Diffusion Diaries: using Diffusible Iodine-Based Contrast-Enhanced...'

Jaimi Gray"

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Dr. Jaimi Gray @jaimiagray.bsky.social · 12/07/2025

#ASIHin3D begins! An absolute banger line up of speakers today (including me @ 10.30). LET'S GO 🥳 #JMIH25

Picture of a powerpoint slide that reads "Science in 3D"

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Dr. Jaimi Gray @jaimiagray.bsky.social · 10/07/2025

"Early bird gets the sperm" direct quote by @drscanley.bsky.social during Katherine Greenwald's amazing keynote on unisexual salamanders... And so #JMIH25 begins

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Dr. Jaimi Gray @jaimiagray.bsky.social · 09/07/2025

Alert for those also arriving to St Paul for #JMIH25 on very little sleep and are also into sharks (I think there's a few of you 😉), the Lost Fox has a very strong coffee option called the "Hammerhead".... 🦈

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Dr. Jaimi Gray @jaimiagray.bsky.social · 09/07/2025

En route to the Twin Cities MN for #JMIH2025 ✈️ I'm bringing plenty of stickers for y'all so you have an excuse to hit me up and talk fish and herps 🐟🐢🐠🐡🐸🦎🐍🐊 Catch my talk in the #ASIHin3D symposium on Saturday...

A coffee cup sitting on a table at an airport. Next to the coffee cup lies a pile of colorful stickers showcasing 3D renderings of CT scans

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Dr. Jaimi Gray @jaimiagray.bsky.social · 26/06/2025

I used my 3D printer to create educational anatomical models of the brains of fish, frog, & lizard 🐟🐸🦎 The (color-blind friendly) colors demonstrate anatomical regions, and the 🧠 are many times larger than their real size. They can be removed from their stands for closer examination/comparison 🧪

Top: black and white 3D rendering of a dusky basslet fish
Bottom left: purple/pink 3D rendering of the brain of the fish, with a scale bar representing 0.5 mm
Bottom right: A photograph of a 3D printed and painted anatomical model of the fish brain on a white stand, with colors demonstrating anatomical regions.

Top: black and white 3D rendering of a midwife toad
Bottom left: purple/pink 3D rendering of the brain of the frog, with a scale bar representing 1 mm
Bottom right: A photograph of a 3D printed and painted anatomical model of the frog brain on a white stand, with colors demonstrating anatomical regions.

Top: black and white 3D rendering of a plated lizard
Bottom left: purple/pink 3D rendering of the brain of the lizard, with a scale bar representing 3 mm
Bottom right: A photograph of a 3D printed and painted anatomical model of the lizard brain on a white stand, with colors demonstrating anatomical regions.

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Dr. Jaimi Gray @jaimiagray.bsky.social · 20/06/2025

Who are those sweet slippery noodles with tiny eyes? Caecilians of course! 🥰 I imaged these limbless amphibs for #oVertTCN using #diceCT to enhance the contrast of the soft tissues. You can find the datasets on MorphoSource with the other diceCT amphibians: www.morphosource.org/projects/000... 🧪

Seven 3D renderings of caecilians (limbless amphibians) arranged on a balck background. Each is rendered in a different color, from left to right and top to bottom: red, teal, electric blue, purple, green, orange, yellow.

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Dr. Jaimi Gray @jaimiagray.bsky.social · 13/06/2025

Can we just take a moment to appreciate turtle skeletons? 🐢🦴🤯 The original model of this gopher tortoise skeleton on Sketchfab (skfb.ly/ooVZS) is a crowd favorite & I've received requests for a downloadable version lately, so I uploaded a new one to MorphoSource: www.morphosource.org/concern/medi...

image with black background, showing a colored 3D model of a gopher tortoise with bisected shell and transparent right side, revealing the skeleton inside. Shown in anterior (top), anterolateral (middle), and right lateral (bottom) views. An image of the museum specimen on a white background, with scale bar, is shown in the top left corner.

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Dr. Jaimi Gray @jaimiagray.bsky.social · 12/06/2025

Glad to see Vera et al. lead the way for 3D data sharing in Aus. I hope that Ozboneviz 🦴 shows great things that can happen when you share 3D data FAIR-ly. After working on oVert & seeing it be an amazing thing for US collections, it's somewhat poetic that this paper comes from my home state of SA 🥰

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Weisbecker B&B Lab @weisbeckerbblab.bsky.social · 11/06/2025

The result of three years’ worth of travel through Australia’s museum collections and three Universities, and heaps of help from the MorphoSource and oVert Teams @jaimiagray.bsky.social :

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Dr. Jaimi Gray @jaimiagray.bsky.social · 10/06/2025

Decided there's not enough lizards in the #ColorsOfSkullAnatomy collection 🦎 So, new to the gang: Phyllurus platurus (southern leaf tail gecko). An Aussie lizard of course, and one of the 1st specimens I scanned at Florida Museum in 2021 www.graysvertebrateanatomy.com/leaftail-gecko-skull-anatomy/

On the left of the image are three different views of a 3D model of the skull of a leaf tail gecko (Phyllurus platurus), with all bones isolated and colored to demonstrate skull anatomy, from top to bottom, anterolateral view, dorsal view, and anterior view. On the right side of the image is a 3D rendering of a contrast enhanced CT scan of the whole body of the specimen, rendered in purple.

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Dr. Jaimi Gray @jaimiagray.bsky.social · 06/06/2025

Had a marvelous time teaching our UTCT bio/paleo short course this week! 3D Slicer and dragonfly, with a hint of Blender and diceCT... Participants are now equipped to go forth and render/segment/measure/analyze their CT data 🤓

The computer lab at UTCT, with large monitors showing CT data being processed by students. Dave Edey sits at a PC at the front of the room, demonstrating how to use the Dragonfly CT processing software.

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Dr. Jaimi Gray @jaimiagray.bsky.social · 02/06/2025

Today we welcome our bio/paleo short course participants to UTCT! Three days of CT and data processing, coming right up 💁

Sign that reads "welcome to UTCT bio/paleo short course, Jessie, Dave Romy, Jaimi"

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Dr. Jaimi Gray @jaimiagray.bsky.social · 17/05/2025

And that's a wrap on our NoCTURN 2025 meeting at the @amnh.org 🎉🎉 I'm brimming with pride at all the things we've been able to achieve! Just the most marvelous community (who knows how to have a good time). Look at all the things we did (much more still to come 😉): nocturnetwork.org

The Non-Clinical Tomography Users Research Network standing all together in the dinosaur hall at the American Museum of Natural History

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Dr. Jaimi Gray @jaimiagray.bsky.social · 14/05/2025

ToScA attendees were living it UP on our dinner cruise in New York city 🗽🛥️

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Dr. Jaimi Gray @jaimiagray.bsky.social · 14/05/2025

Got to stand up at the @amnh.org & tell everyone at ToScA about the #oVertTCN project and some of the fun things it led to... 🐒🦌🐀🦜🐸🦎🐊🐢🐦‍⬛🐟🐍🦔

Jaimi Gray presenting on stage behind a podium at the American Museum of Natural History. The slide behind her details the number of genera the oVert project scanned.

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Dr. Jaimi Gray @jaimiagray.bsky.social · 13/05/2025

I had a blast yesterday teaching Slicer in this funky dome at @amnh.org! Thanks to all the attendees for coming along for the ride 🎢🧪

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Dr. Jaimi Gray @jaimiagray.bsky.social · 12/05/2025

Hey New York!!! Excited to be here at the AMNH for ToScA and NOCTURN meetings this week! Day 1, workshops! I'll see some of you in the 3D Slicer sessions 😎

A picture of the front entrance of the American Museum of Natural History

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Dr. Jaimi Gray @jaimiagray.bsky.social · 04/05/2025

One of the thousands of vertebrates we scanned for #oVertTCN, funded by NSF. This is Tomistoma schlegelii, the "false gharial" with some brightly colored osteoderms I bejeweled with some pinks and purples🐊 Download the Tomistoma datasets for free here: www.morphosource.org/concern/biol...

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Dr. Jaimi Gray @jaimiagray.bsky.social · 02/05/2025

For some reason my post from months ago is shooting back up into Bsky feeds. I ❤️ that #oVertTCN is giving a people a little twinkle of joy right now. Being part of it is one of my proudest accomplishments. Some more info (PLZ watch the video): www.floridamuseum.ufl.edu/science/scie...

floridamuseum.ufl.edu

Scientists CT scanned thousands of natural history specimens, which you can access for free

Natural history museums have entered a new stage of scientific discovery and accessibility with the completion of openVertebrate (oVert), a six-year collaborative project among 18 institutions to crea...

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Dr. Jaimi Gray @jaimiagray.bsky.social · 25/04/2025

Feel like we need some ❤️ today so here are some close ups of the 🫀hearts🫀 from the Diffusion Diaries (read it here: doi.org/10.1093/iob/...) 1. 🦇 Schneider's leaf nosed bat 2. 🐟 bowfin 3. 🐸 midwife toad 4. 🦎 collared lizard

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SICB journals @sicbjournals.bsky.social · 24/04/2025

IOB- The Diffusion Diaries: "Diffusible iodine-based contrast-enhanced CT (#diceCT) is commonly used to create three-dimensional (#3D) rep- resentations of the soft tissue #anatomy of preserved #vertebrate specimens." @jaimiagray.bsky.social et al doi.org/10.1093/iob/... #morphology #taxonomy

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SICB journals @sicbjournals.bsky.social · 23/04/2025

IOB fresh ink this week! @jaimiagray.bsky.social et al's The Diffusion Diaries: Diffusible Iodine-Based Contrast-Enhanced Computed #Tomography for #Vertebrate Natural History #Specimens Gray, Sheehy, Blackburn et al doi.org/10.1093/iob/... & see www.graysvertebrateanatomy.com/about/

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Dr. Jaimi Gray @jaimiagray.bsky.social · 21/04/2025

🚨New publication alert!🚨 A big one! It might just be my *biggest* one: doi.org/10.1093/iob/... IMPORTANT THREAD! From the moment Dave Blackburn set me loose at the Florida Museum, I had a marvelous time using diffusible iodine-based contrast-enhanced CT (diceCT) to create anatomical datasets 🧪1/6

Graphical abstract for "The Diffusion Diaries: Diffusible Iodine-Based Contrast-Enhanced CT for Vertebrate Natural History Specimens", showing the number of scans : "252 scans of 205 specimens from 7 natural history collections" a plot showing how staining time increases with mass, log-transformed (bottom left), a pie chart showing the Tissue Condition scores (TCS) recorded for all specimens (bottom middle), and a screenshot of a lab protocol for diceCT'ing museum specimens (bottom right)

Cover image for Integrative Organismal Biology, showing cross sections through a fish, a tenrec, a frog, and a lizard at the bottom of the image, and a 3D rendering of each animal at the top of the image (colored in teal, grey, yellow, and pink, respectively)

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Dr. Jaimi Gray @jaimiagray.bsky.social · 17/04/2025

Hey it's international bat appreciation day 🦇 Here's a rendering of a skeleton of a Daubenton's free tailed bat I scanned for #oVertTCN. This AMNH specimen was collected in the Congo in 1910! This poor girl has quite a few broken bones 😢 See if you can spot them www.morphosource.org/media/000519...

3D rendering of a CT scan of a Daubenton's free tailed bat, colored in yellow (most dense), blue (medium density), and purple (low density), (left) ventral view, (middle) right lateral view, right, dorsal view.

3D rendering of a CT scan of a Daubenton's free tailed bat, colored in yellow (most dense), blue (medium density), and purple (low density), viewed from the front of the face.

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Dr. Jaimi Gray @jaimiagray.bsky.social · 14/04/2025

When I CT scanned this diamondback rattlesnake specimen, I found a surprise rodent inside 🐍🐁 The #oVertTCN CT data is available for download on MorphoSource here: www.morphosource.org/concern/medi...

3D renderings of a CT scan of a small rattlesnake. Top: rendering of snake skeleton in brown with rodent skeleton inside rendered in pink and orange, overlayed on the same image with the snake's skeleton rendered transparent and the rodent in pink and orange. Bottom: Closer up view of the rodent viewed from the other side, showing the front of the skull with teeth.

Image of a preserved rattlesnake specimen, coiled up with mouth open and fangs bared.

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Dr. Jaimi Gray @jaimiagray.bsky.social · 04/04/2025

Every year UTCT teaches NSF sponsored short courses on high-resolution X-ray CT, taught by UTCT staff (including me!). Applications for the 2025 courses are now open! See below for the biological/paleontological course info, & we also have a geological one. If you'd like to apply, send me a DM 🩻☢️🦴

Text that reads: The University of Texas High-Resolution X-ray CT Facility (UTCT) will host a short course on the fundamentals of acquisition, visualization, and analysis of high-resolution X-ray CT (HRXCT) data for biological and paleontological specimens June 2-4, 2025 in Austin, TX.
This short course will present an overview of the acquisition, interpretation, 3D visualization and analysis of HRXCT data. This will be followed by hands-on training focused on 3D visualization, surface extraction, and segmentation (e.g., endocasts, digital dissection) including deep learning. Covered programs include ImageJ, Dragonfly, and 3D Slicer/SlicerMorph.
This course is sponsored in part by NSF and funds are available to help cover the cost of travel, lodging, and meals. There is no charge to attend. Because we will not be able to accept all applicants, preference will be given to those who have/will have HRXCT data for the course and have a demonstrated need for immediate application of the skills learned. Students and early-career researchers receive priority. Participants are invited to bring their own HRXCT data, or to have specimens scanned (at a significant discount) at UTCT prior to the course.

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Chris Mah @echinoblog.bsky.social · 31/03/2025

ECHINODERM JOB! Collection Manager at the Los Angeles County Museum! workforcenow.adp.com/mascsr/defau... more on the LACM collection here: nhm.org/research-col...

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Dr. Jaimi Gray @jaimiagray.bsky.social · 20/03/2025

Attending ToScA in New York this year? I'm teaching a 3D Slicer workshop on day 1! Places limited so if you want a spot: run, don't walk to ToScA's registration page 🏃‍♀️ If 3DSlicer isn't for you, there are sessions for other segmentation/recon software www.toscainternational.org/toscana25/wo...

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