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Dagmar Iber & CoBi

@iberd.bsky.social
443 followers 400 following 69 posts

Computational Biology @ETH: data-driven modeling & simulation of emerging phenomena in development & disease bsse.ethz.ch/cobi youtube.com/@cobi-ethz

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Reposted by Dagmar Iber & CoBi
D-BSSE, ETH Zurich @bsse.ethz.ch · 13/08/2026
🫁 From #lung development to understanding #pulmonary #disease | Researchers from #DagmarIber|’s Computational Biology group at @ethz.ch’s D-BSSE are uncovering how the lung’s intricate branching structure develops before birth 👇🏽 www.linkedin.com/posts/eth-d-...
linkedin.com
#lung #computationalbiology #lungdevelopment #copd #digitaltwin #ethzurich #research | ETH-Department of Biosystems Science and Engineering (D-BSSE)
🫁 From #lung development to understanding pulmonary disease Researchers from Dagmar Iber’s Computational Biology group at ETH Zürich’s D-BSSE are uncovering how the lung’s intricate branching struct...
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Dagmar Iber & CoBi @iberd.bsky.social · 13/08/2026
🎉 Our paper is out in Cell Systems @cp-cellsystems.bsky.social ! How does an embryo build an energy-efficient fractal lung before the first breath? 📄 doi.org/10.1016/j.ce... 🧵 bsky.app/profile/iberd.bsky.social/post/3lfrdth6k4c22 @maltemederacke.bsky.social @kevinyamauchi.bsky.social
doi.org
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Reposted by Dagmar Iber & CoBi
D-BSSE, ETH Zurich @bsse.ethz.ch · 11/06/2026
The forces that shape cells, tissues – and medicine: How #mechanobiology has evolved👇🏽 www.linkedin.com/posts/eth-d-...
linkedin.com
The forces that shape cells, tissues – and medicine | ETH-Department of Biosystems Science and Engineering (D-BSSE)
Researchers from D-BSSE, institutions in Basel and their international collaborators show how #mechanobiology is evolving – from studying individual molecules to understanding complex cellular systems...
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Reposted by Dagmar Iber & CoBi
Nature Nanotechnology @natnano.nature.com · 11/06/2026
dlvr.it
Advancing mechanobiology from single molecules to complex cellular systems
Nature Nanotechnology, Published online: 11 June 2026; doi:10.1038/s41565-026-02179-0The Perspective highlights key challenges in mechanobiology, including the need to engineer multicellular reference models, develop and refine biophysical methods to manipulate and quantify biomechanical properties across scales and establish theoretical frameworks to interpret complex mechanobiological phenomena.
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Dagmar Iber & CoBi @iberd.bsky.social · 08/06/2026
Thrilled to see our #DCM paper out in @cp-newton.bsky.social! 🎉 How do cells self-organize into complex patterns so quickly during development? We show that #directed #cell #migration — chemotaxis, durotaxis, differential adhesion — is a surprisingly fast & versatile patterning engine. 🧵👇
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Dagmar Iber & CoBi @iberd.bsky.social · 08/06/2026
🧰 New tool alert! ⚙️ #MorphoGrad, an open-source toolbox for simulating reaction–diffusion systems in 1D and 2D tissues, with cell-to-cell parameter heterogeneity & graphical user interface. No heavy coding required. Explore complex morphogen gradient models interactively. doi.org/10.1016/j.xp...
cell.com
MorphoGrad: A MATLAB toolbox for simulating steady-state morphogen gradients under cell-to-cell variability
Studying morphogen gradient-based tissue patterning in silico while accounting for biological variability remains challenging. Here, we present a MATLAB-based protocol for simulating steady-state morp...
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Dagmar Iber & CoBi @iberd.bsky.social · 28/05/2026
🔬⚙️💻 Excited to share #OptiCell3D, our new image-based framework for inferring cell mechanical properties with high precision from 3D microscopy. www.biorxiv.org/content/10.6... #ComputationalBiology #CellBiology #Biophysics #OpenSource
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Dagmar Iber & CoBi @iberd.bsky.social · 20/03/2026
The @ethz.ch Animal Facility featured our work on how the lung gets its energy-efficient shape and how it remodels in disease like COPD 🐭🫁 — as part of their spotlight on responsible animal research. 🧵(1/4)
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Dagmar Iber & CoBi @iberd.bsky.social · 11/02/2026
What determines the sharpness of cell fate boundaries in gradient-based patterning? We quantified #transition #zone #widths (TZW) across seven progenitor domain boundaries spanning the entire dorsal-ventral axis of the developing #mouse #neural #tube. Preprint: doi.org/10.64898/202... 🧵 1/6
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Reposted by Dagmar Iber & CoBi
SIB Swiss Institute of Bioinformatics @sib.swiss · 18/09/2025
"Within the competition to bring this field to a new level, SimuCell3D is remarkable and will mark a clear evolution of the topic." 🥁That’s what the committee said about this #SIBRemarkableOutputs 2024 👉Discover the output: tinyurl.com/53arz2rz @iberd.bsky.social
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Dagmar Iber & CoBi @iberd.bsky.social · 12/09/2025
Out now: Simulating Organogenesis in #COMSOL: Tissue Patterning with Directed Cell Migration We provide a detailed walkthrough of how to implement #DCM partial integro-differential equation models - enabling accessible simulations of tissue patterning and morphogenesis. arxiv.org/pdf/2509.08930
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Reposted by Dagmar Iber & CoBi
Newton @cp-newton.bsky.social · 22/08/2025
Online now: Morphogen gradients can convey position and time in growing tissues #newton #physics
dlvr.it
Morphogen gradients can convey position and time in growing tissues
Morphogen gradients are known to guide spatial patterning, but can they also encode time? Vetter and Iber propose that a co-expanding morphogen source generates transient signals, allowing cells to measure time without additional molecular clocks. The Sonic Hedgehog gradient in the mouse neural tube is used to show how this mechanism can act as a timer. Opposing gradients synchronize differentiation across the tissue, providing a simple, widely applicable strategy for coordinating space and time during development.
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Dagmar Iber & CoBi @iberd.bsky.social · 25/08/2025
Our paper "Morphogen gradients can convey position and time in growing tissues" is now out in Newton ‪@cp-newton.bsky.social‬ Quite fitting to see this novel idea that morphogen gradients not only encode position, but can also time & synchronise development over long distances out in a new journal.
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Dagmar Iber & CoBi @iberd.bsky.social · 30/07/2025
How can cells self-organize rapidly into complex patterns during development? Let’s explore a powerful and underappreciated mechanism: Directed Cell Migration (DCM). Preprint @biorxivpreprint.bsky.social : doi.org/10.1101/2025... 👇Thread 🧵(1/11)
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Dagmar Iber & CoBi @iberd.bsky.social · 21/06/2025
Let me add our paper to this review of mechanical drivers of NT folding. We showed that mammalian spinal #neuraltube folding is primarily driven by #mesoderm expansion and #zippering. #Hingepoints emerge as a result of these extrinsic forces. www.pnas.org/doi/10.1073/... x.com/DagmarIber/s...
x.com
Dagmar Iber on X: "How do #embryos fold their neural plate into a closed #neuraltube? Check out our latest #mechanobiology #preprint on the mechanical basis of mammalian spinal neurulation: https://t.co/McOxom009T #development #DevBio #morphogenesis @veerle_goederen, Roman Vetter, Katie McDole https://t.co/hfczsM7Rqu" / X
How do #embryos fold their neural plate into a closed #neuraltube? Check out our latest #mechanobiology #preprint on the mechanical basis of mammalian spinal neurulation: https://t.co/McOxom009T #development #DevBio #morphogenesis @veerle_goederen, Roman Vetter, Katie McDole https://t.co/hfczsM7Rqu
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Reposted by Dagmar Iber & CoBi
epithelial mechanics fan club @epimechfc.bsky.social · 15/06/2025
Epithelial tissues are well-known to invade free space and stop proliferation at confluency. Do we know what regulates cell proliferation spatially and temporally? 🧵by @dedenonmathieu.bsky.social
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Dagmar Iber & CoBi @iberd.bsky.social · 11/06/2025
Are you a C++ expert and interested in making 3D cell-based tissue simulations with #SimuCell3D ever more powerful? Please apply and join us as #Master student, #PhD student or #Post-Doc!! jobs.ethz.ch/job/view/JOP... jobs.ethz.ch/job/view/JOP... x.com/DagmarIber/s...
jobs.ethz.ch
PhD Position - 3D Cell-Based Tissue Simulation Framework
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Reposted by Dagmar Iber & CoBi
epithelial mechanics fan club @epimechfc.bsky.social · 08/06/2025
SimuCell3D … for simulating tissue mechanics with cell polarization. @iberd.bsky.social Dimension: 3D Software language: C++ Download: git.bsse.ethz.ch/iber/Publica... bsky.app/profile/epim...
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Dagmar Iber & CoBi @iberd.bsky.social · 10/04/2025
🚀 Introducing #PINNverse — a game-changer for parameter estimation in differential equations! 🧠💡 No forward solves. Better accuracy. Robust to noise. Preprint: doi.org/10.48550/arX... #SciComm #MachineLearning #InverseProblems #PINNs
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Dagmar Iber & CoBi @iberd.bsky.social · 20/02/2025
What a beautiful cover for our #mechanobiology paper "Morphometry and mechanical instability at the onset of epithelial bladder cancer": doi.org/10.1038/s415... - thx @naturephysics.bsky.social !! News & Views "Tissue wrinkles foreshadow cancer" doi.org/10.1038/s415...
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Reposted by Dagmar Iber & CoBi
CellMech2025 @cellmech2025.bsky.social · 04/02/2025
🚨 We are thrilled to announce our amazing list of keynote speakers!! @PCusachs @GeorgHalder @hirashima0203.bsky.social @iberd.bsky.social @johannaivaska.bsky.social @gijsjekoenderink.bsky.social @laurentnguyen.com @renkawitzteam.bsky.social @Sixt_Lab ...
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Dagmar Iber & CoBi @iberd.bsky.social · 31/01/2025
Pleased to share our latest review "Coordination of nephrogenesis with branching of the urinary collecting system, the vasculature and the nervous system" authors.elsevier.com/a/1kXJ6Fzn7S...
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Dagmar Iber & CoBi @iberd.bsky.social · 23/01/2025
Thoughtful perspective by Alexander Mietke on our recent work on #bladdercancer @naturephysics.bsky.social : www.nature.com/articles/s41...
nature.com
Tissue wrinkles foreshadow cancer - Nature Physics
In a cancer mouse model, wrinkling patterns in bladder-lining tissue differ from their healthy counterparts. Changes in tissue-mechanical properties that alter elastic buckling instabilities explain t...
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Dagmar Iber & CoBi @iberd.bsky.social · 15/01/2025
How does an #embryo build an energy-efficient #fractal #lung in time for the first breath at birth? 🫁 Discover the mechanical forces shaping the bronchial tree in our latest preprint: #LungDevelopment #Mechanobiology doi.org/10.1101/2025... 👇Thread 🧵(1/9)
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Dagmar Iber & CoBi @iberd.bsky.social · 07/01/2025
Our paper "Morphometry and mechanical instability at the onset of epithelial bladder cancer" is now out in @naturephysics.bsky.social : rdcu.be/d5rTP #BladderCancer #Cancer #Tumor #Biomechanics #Morphometry #ComputationalModeling
rdcu.be
Morphometry and mechanical instability at the onset of epithelial bladder cancer
Nature Physics - Carcinoma subtypes are normally linked to specific genetic alterations, but tissue mechanical changes also play a role. Now, aberrant morphologies resembling bladder carcinoma are...
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Dagmar Iber & CoBi @iberd.bsky.social · 09/12/2024
We are looking for a #PostDoc with experience in #BioImage Analysis @ETH in #Basel, CH. Our mission: translate image-derived insights into mechanistic models of development & disease #lightsheet #ultrasound #CT www.jobs.ethz.ch/job/view/JOP...
jobs.ethz.ch
Post-Doc Position: Bio-Image Analysis
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