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Helen Zenner @helenzsci.bsky.social · 10/09/2026

FOCUS-3D sounds fantastic. I can't quite believe the incredible amount of training data (& I like the fact that they included such a range of data.) I also like that it is possible to have a quick try with the method using the website option. I'm looking forward to the future developments as well!

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FocalPlane @focalplane.bsky.social · 10/09/2026

🔬🔦Our latest Imaging spotlight highlights FOCUS-3D, a tool for segmenting cells from 3D fluorescence images from Qinghua Zhang, @mads100tist.bsky.social, @gqyu.bsky.social & team. They tell us what’s different about FOCUS-3D and what makes it so useful and usable for biologists.

focalplane.biologists.com

Imaging spotlight: FOCUS-3D - FocalPlane

Imaging spotlight: FOCUS-3D - News

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HHMI @hhmi-science.bsky.social · 09/09/2026

An animal’s body is in constant conversation with itself — & HHMI Janelia scientists have built a way to listen in. WHOLISTIC simultaneously records real-time activity from nearly every cell in a living larval zebrafish, a 1st step in understanding more complex bodies like ours: bit.ly/4xMR1Ww.

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FocalPlane @focalplane.bsky.social · 04/09/2026

It’s #preprint list time! This week we focus on new research in bioimage analysis. Let us know if you have any suggestions for us to add to our list. focalplane.biologists.com/2026/09/04/m...

focalplane.biologists.com

Microscopy preprints: bioimage analysis - FocalPlane

Microscopy preprints: bioimage analysis - News

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MwahahahahahadScientist @mads100tist.bsky.social · 29/08/2026

Do you work with microscopy images and segment to quantify or track? Do you study cell biology? development? Gather round! Let me tell you about FOCUS-3D, a segmentation algorithm that is fast, accurate and can be used on any model. We used it here to study zebrafish development. 🧪 (thread)

biorxiv.org

FOCUS‑3D: Robust, generalizable volumetric cell segmentation for three‑dimensional fluorescence microscopy

Understanding how cells establish spatial organization within tissues is a fundamental question in life sciences. While modern three-dimensional fluorescence microscopy captures large-volume tissue ar...

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bioRxivpreprint @biorxivpreprint.bsky.social · 28/08/2026

FOCUS-3D: Robust, generalizable volumetric cell segmentation for three-dimensional fluorescence microscopy www.biorxiv.org/content/10.64898/20…

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MwahahahahahadScientist @mads100tist.bsky.social · 28/08/2026

It's out! I will do a thread tomorrow, but for now: rejoice, my microscopy nerds and also learn about zebrafish notochord development! 🧪🐟

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