Inferring alien oligonucleotides (adapter, primer, index, barcode, ...) without any prior or external knowledge

Assembling SSU

Unified strain taxonomies are needed for the epidemiological surveillance of bacterial pathogens and international communication in microbiological research. Core genome multilocus sequence typing (cg...

Among mother-neonate pairs in Madagascar and Cambodia, authors found maternal gut carriage explains only 16.5% of early neonatal extended-spectrum beta-lactamase Enterobacterales acquisition, question...

Inferring alien oligonucleotides (adapters, primers, ...) from FASTQ file

Fast trimming of sequencing reads

Institut Pasteur Gitlab

We are looking for a project manager to develop our activities around the genomic taxonomy of bacterial strains and the corresponding platform at https://bigsdb.pasteur.fr/. The project manager’s main...

EU Reference Laboratories for public health

This study reveals prior undetected transmission events of Corynebacterium ulcerans, suggesting pets play an intermediary role between wildlife and humans. Two main sublineages were identified, showin...

In honor of the 100th birthday of Margaret Dayhoff, we spotlight her footprint in the field of bioinformatics.

If you are a corresponding author affiliated with a participating French institution within Couperin, the agreement reached means you can publish your article open access (OA) with fees covered by you...

Two motile bacterial strains, designated as cfHf56-1T and SW 252, were isolated from the coelomic fluid of Holothuria forskali and from the surrounding seawater at the animal sampling site, respective...

Institut Pasteur Gitlab

A Gram-staining-positive, aerobic bacterium, designated strain JJ-181 T, was isolated from the root surface of soybean. Based on the 16S rRNA gene sequence similarities, strain JJ-181 T was grouped in...

We read with great interest the article by Valdezate et al.,1 which reports the first case of co-occurrence of the cepA and cfiA antimicrobial resistance g