Sign in

Wayne

@fomightez.bsky.social
102 followers 253 following 6 posts

Wayne ~~ ~Jupyter Distinguished Contributor ~ ~ ~ fomightez.github.io ~ ~ ~ ~ ~ ~ I run Proteopedia's social media too ~~ ~ He/His

PostsRepliesMedia
Reposted by Wayne
Martin Renou @martinrenou.bsky.social · 24/08/2026
Announcing JupyterGIS 0.16.0! 🤩 👋 blog.jupyter.org/jupytergis-0... We are excited to show you everything we've been building for the past months: - improved story-maps look and editor - a new Grammar Of Graphics symbology - openEO support - a new R API @jupyter.org @geojupyter.bsky.social
0228
Reposted by Wayne
Bioconductor @bioconductor.bsky.social · 27/10/2025
🎓 Upcoming Online Course: RNA Sequencing Data with R/Bioconductor by Physalia Courses and Bioconductor Training 📅 November 3–14, 2025 Instructor: Dr Ludwig Geistlinger 👉 Register and learn more: www.physalia-courses.org/courses-work...
physalia-courses.org
RNA sequencing data with R/Bioconductor
Online, 3-14 November 2025 To foster international participation, this course will be held online
032
Reposted by Wayne
Johannes Köster @johanneskoester.bsky.social · 17/10/2025
Want to help shaping the future of #Snakemake? Then participate in the Snakemake hackathon 2026 in Munich! There's still room as the maximum number of participants is not yet reached. You can register here: indico.cern.ch/e/snakemake-... #sciworkflows #reproducibility
indico.cern.ch
Snakemake Hackathon March 2026
We are excited to announce the Snakemake Hackathon 2026, to be held 9-13 March, 2026 at the Technical University Munich. This event will bring together passionate developers and data scientists to col...
065
Reposted by Wayne
Project Jupyter @jupyter.org · 07/10/2025
Go from JupyterLab user to creator 🚀 At JupyterCon 2025, learn to build + publish custom extensions for real-world workflows — guided by experts in JupyterLab development. 🗓️ Nov 3 | San Diego Details: sched.co/28H2m Register: events.linuxfoundation.org/jupytercon/r...
054
Reposted by Wayne
Titus Brown @titus.idyll.org · 22/09/2025
Join us! workflows.community/talks/2025_0...
workflows.community
Teaching workflow systems to new users: why is it so hard?
I’ll discuss the challenges (and opportunities!) of teaching workflow systems to scientists, and present two concepts that I have found useful for guiding my teaching: (1) workflow systems as imperfec...
042
Reposted by Wayne
Chris Holdgraf @choldgraf.com · 15/09/2025
JupyterCon 2025 has an early-bird registration discount that ends October 3rd! Get your tickets now, and check out the schedule below events.linuxfoundation.org/jupytercon/p...
events.linuxfoundation.org
Schedule | LF Events
View the O3DECon 2021 Schedule & Directory.
064
Reposted by Wayne
2i2c @2i2c.org · 03/09/2025
A reminder that there are two Call for Proposals out from the Jupyter Foundation! 👉 (deadline soon!) Jupyter Community Workshops: blog.jupyter.org/jupyter-comm... 👉 Jupyter Community Support funding: blog.jupyter.org/your-ideas-o... Check them out and share the word!
blog.jupyter.org
Jupyter Community Workshops Are Back!
The Jupyter Community Building Working Group is pleased to announce that the next call for proposals for Jupyter Community Workshops is now…
012
Reposted by Wayne
Project Jupyter @jupyter.org · 29/08/2025
Jupyter Community Workshops are back! Workshops will be held through February 2026. The call for proposals is open until September 7th! Learn more and submit your proposal here: blog.jupyter.org/jupyter-comm...
blog.jupyter.org
Jupyter Community Workshops Are Back!
The Jupyter Community Building Working Group is pleased to announce that the next call for proposals for Jupyter Community Workshops is now…
075
Reposted by Wayne
Jeremy Tuloup @jtp.io · 19/08/2025
👋 JupyterLab and Jupyter Notebook users: What's one thing you'd love to see improved in JupyterLab, Jupyter Notebook, or JupyterLite? The team is prepping the upcoming 4.5/7.5 releases and wants to tackle some usability issues. Drop your feedback below, this will help prioritize what gets fixed!👇
41710
Reposted by Wayne
Chris Holdgraf @choldgraf.com · 18/07/2025
🚨 the JupyterCon CFP closes on Sunday (in 2 days) at the end of the day! 🚨 Get your submissions in quickly! events.linuxfoundation.org/jupytercon/p...
events.linuxfoundation.org
Call For Proposals (CFP) | LF Events
The Jupyter ecosystem has transformed data science, scientific research, and education. It has shaped the way a generation of developers and scientists develop their workflows.
013
Reposted by Wayne
Institute for Research Software @softwaresaved.bsky.social · 04/07/2025
🔥 We are pleased to announce the The Turing Way Fireside Chat Series on Governance. This series brings together experts and community members to explore the many dimensions of governance in research and open science. Find out more about the events at: www.software.ac.uk/news/turing-...
Learning from Each Other's Journeys: case studies from Open Initiatives
0811
Reposted by Wayne
Ming Tommy Tang @tommytang.bsky.social · 03/07/2025
BiocPy: Facilitate Bioconductor Workflows in Python github.com/BiocPy
0115
Reposted by Wayne
Jeremy Tuloup @jtp.io · 04/06/2025
For those of you who prefer R over Python — good news! 🎉 You can now try out and run R code directly right in your browser from the @jupyter.org website — all in just a couple of seconds 🚀 Huge thanks to Isabel Paredes and contributors for making this possible! 👉 jupyter.org/try
042
Reposted by Wayne
Beckmann Lab @beckmannlab.bsky.social · 26/05/2025
Our results finally explain the essential role of snR30 snoRNA! Check out the details in www.nature.com/articles/s41...
nature.com
H/ACA snR30 snoRNP guides independent 18S rRNA subdomain formation - Nature Communications
During synthesis, modification and maturation of the ribosomal RNA, correct subdomain folding without additional guidance poses a major challenge. Here, the authors observe the snR30 H/ACA snoRNP form...
071
Reposted by Wayne
The Turing Way @turingway.bsky.social · 14/04/2025
Join our Github training workshop - open to all (including people not signed up for Book Dash!) ⚒️ Learn how to use the Github platform ⚒️ Make your first Pull Request ⚒️ Find out how to contribute to The Turing Way project 📅 6 May ⏰ 5-5:30 UTC+1 forms.gle/GBrBmpbJ4DdT...
forms.gle
The Turing Way - Github Workshop - May 2025
Date: Monday, 6 May, 15-16:30 UTC+1 (in your timezone) The Turing Way is a community-led resource for reproducible, open, collaborative, and inclusive data science. Created by over 400 contributors, T...
133
Reposted by Wayne
Project Jupyter @jupyter.org · 31/03/2025
JupyterCon 2025 is happening! Join us in San Diego, California, from November 3–6, 2025. CFP is open now. Learn more at bit.ly/jupytercon
bit.ly
JupyterCon | LF Events
Discover the future of data science with hands-on training, visionary keynotes, innovative tools, and insights from top Jupyter contributors.
0217
Reposted by Wayne
Michał (Mike) Krassowski @krassowski.bsky.social · 14/03/2025
JupyterLab 4.4.0b1 and Notebook 7.4.0b1 are available for testing 🎉 - improved code console - settings import/export - better real time collaboration - workspace indicator - kernel subshells Please test: pip install --pre 'jupyterlab>=4.4.0b1' or pip install --pre 'notebook>=7.4.0b1'
The option to change console prompt position is available under the three dots button in the console toolbar, which is the last toolbar buttonToggling all the three new settings transforms the console into a single cellThe Import and Export buttons in the Settings Editor are the first two items in the toolbar panelThe workspace indicator in the open state
044
Reposted by Wayne
Jeremy Tuloup @jtp.io · 28/02/2025
R in JupyterLite 💡 😍 🎉
A screenshot showing the R kernel in JupyterLite
092
Reposted by Wayne
Will McGugan @willmcgugan.bsky.social · 26/02/2025
Pythonistas, if you haven't already done this, give it a try! Run this in your terminal: uvx textual-demo Requires UV docs.astral.sh/uv/
2242
Reposted by Wayne
Martin Renou @martinrenou.bsky.social · 27/02/2025
Announcing JupyterGIS 🌍 🌐 🎉 Real-time collaboration for #GIS workflows with #Jupyter and #QGIS @qgis.fosstodon.org.ap.brid.gy @jupyter.org blog.jupyter.org/real-time-co...
blog.jupyter.org
Real-time collaboration and collaborative editing for GIS workflows with Jupyter and QGIS
The QGIS open-source project is a cornerstone in the geosciences ecosystem, providing robust tools for spatial data analysis and…
44327
Reposted by Wayne
Jeremy Tuloup @jtp.io · 06/02/2025
The PR improving the JupyterLab code consoles has been merged, and is now available in the latest JupyterLab, Notebook and JupyterLite pre-releases! ➡️ pip install --pre jupyterlab notebook 💡We're working on making the new options available in the JupyterLite REPL, stay tuned! 💡
044
Reposted by Wayne
2i2c @2i2c.org · 05/02/2025
2i2c has officially become part of the mybinder.org federation, introducing a new, cost-effective, and faster approach. We hope to make it easier for more people to join the federation by contributing a single-node BinderHub at 2i2c.mybinder.org. More in our blog: 2i2c.org/blog/2025/binde…
5127
Reposted by Wayne
University of Arizona DataLab @uarizonadatalab.bsky.social · 31/01/2025
U of A DataLab workshops: week of Feb 3rd. 2025. Want to improve your skills with AI/ML tools, foundation models, and methods? Join our weekly workshops at the U of A DataLab. #AI #ML #UArizona #UArizonaDataLab #DataScience #GenAI #Bioinformatics ua-datalab.github.io/events/
ua-datalab.github.io
Events Calendar - University of Arizona DataLab
The University of Arizona DataLab supports multiple ways to improve research, provides career opportunities, facilitates industry partnerships, and encourage innovation and entrepreneurship at our Uni...
022
Reposted by Wayne
Chris Holdgraf @choldgraf.com · 27/11/2024
I'm excited to get Binder / JupyterHub launch button functionality back into Jupyter Book 2! Gets a little better every day! github.com/jupyter-book...
github.com
🚀 Prototyping launch buttons for JupyterHub & MyBinder by agoose77 · Pull Request #503 · jupyter-book/myst-theme
To close jupyter-book/mystmd#1643 and jupyter-book/mystmd#1644, this PR prototypes a launch UI. We will want to move things around in time, but this PR is designed to start design conversations. Th...
0102
Reposted by Wayne
erzbergerlab.bsky.social @erzbergerlab.bsky.social · 26/11/2024
Yeast ribosomes adapt to glucose starvation by tethering to mitochondria in hibernation. Prolonged depletion halts protein synthesis and remodels ribosomes to create protective ribosome arrays. #ribosomes #RNASky #RNABiology #translation rdcu.be/d1xqj
rdcu.be
Ribosomes hibernate on mitochondria during cellular stress
Nature Communications - Cells adapt to low glucose by halting protein synthesis and altering organelle shape. Here the authors showed that hibernating ribosomes tether to mitochondria and form...
09931
Reposted by Wayne
Sam Rodriques @sgrodriques.bsky.social · 20/11/2024
New on BioRxiv: We report a new, endogenous molecular clock in unmodified human cells and tissues. It is ticking away right now in almost every cell in your body. Paper here: www.biorxiv.org/content/10.1... 1/
23319
Reposted by Wayne
Chris Holdgraf @choldgraf.com · 19/11/2024
Big milestone for Project Jupyter 🚨: Jupyter has finalized the creation of the Jupyter Foundation, hosted by @linuxfoundation.org. www.linuxfoundation.org/press/linux-...
linuxfoundation.org
Linux Foundation Announces Formation of the Jupyter Foundation
Linux Foundation Announces Formation of the Jupyter Foundation
16222