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Fabrice Not

@fabnot.bsky.social
287 followers 110 following 6 posts

Senior Scientist @ Station biologique de Roscoff, France #cnrs #sorbonneuniversity #eDNA #radiolaria #microbiomes #symbiosis #protists

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Reposted by Fabrice Not
EMBRC (European Marine Biological Resource Centre) @embrc.eu · 22/09/2026
"Academia brings new ideas, but companies are the ones that are actually going to produce them." Nicolas Pade, Executive Director at EMBRC, comments on why closing the gap between science and business is essential for European innovation. Watch the full interview: swll.to/o6Psl
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Reposted by Fabrice Not
John Burns @burnsajohn.bsky.social · 26/02/2026
Protist lovers: Please apply for a week of rhapsody! Learn by doing: MicroSEA (Microbial Sea Eukaryotes) course is a one-week, field-based summer school to train early-career researchers in the diversity, ecology, and single-cell biology of marine protists. opbc.sciencesconf.org #protistsonsky
MicroSEA (Microbial Sea Eukaryotes) course is a one-week, field-based summer school to train early-career researchers in the diversity, ecology, and single-cell biology of marine protists. MicroSEA course integrates lectures, field sampling, and lab-based practicals in advanced techniques, such as flow cytometry, microscopy, culturing, and molecular analysis.

The main objectives of MicroSEA course are: 

Fostering a deep understanding of marine protist diversity, ecology and biology;
Providing hands-on training in advanced single-cell methods that are not commonly available in university programs;
Building participants' confidence in designing and conducting research projects from field to data analysis;
Promoting international collaborations and peer networking among students and speakers/trainers.
The course will take place at the Station Biologique de Roscoff - SBR (France) - 7th to 12th of June, 2026 (arrival on the 6th, departure on the 13th).

20 participants will be selected, including 10 from EuroMarine member institutes.

https://opbc.sciencesconf.org/
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Reposted by Fabrice Not
Miguel Méndez Sandín @sandinmm.eurosky.social · 15/12/2025
New preprint out! Using ~75k environmental OTUs + 77 fossil calibrations, we reconstructed a Proterozoic timeline of eukaryote evolution. Our results show crown eukaryotes were already diversifying >1.6 Ga, long before the first undisputed fossils (~1.05 Ga). 🔗 DOI: www.biorxiv.org/content/10.6...
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Metabarcoding and Metagenomics @mbmg.pensoft.net · 08/10/2025
Researchers present the BaNaNA (Barcoding Nanopore Neat Annotator) pipeline and display the effectiveness of long-read Nanopore sequencing for protist biodiversity, ecology and evolution research. 🔗 doi.org/10.3897/mbmg... @ankarn.bsky.social @fabnot.bsky.social
doi.org
From short to long reads: enhanced protist diversity profiling via Nanopore metabarcoding
In the last decades, environmental metabarcoding has revolutionised biodiversity research, particularly for microbial organisms such as protists, enabling large-scale assessments of diversity and ecol...
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Fabrice Not @fabnot.bsky.social · 12/05/2025
Thank you so much to the amazing LoRe crew for giving me this wonderful opportunity ! It’s been a great time spent chatting together and an honor to get this series of podcasts started 🤩🙏. #protistonsky
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Reposted by Fabrice Not
Miguel Méndez Sandín @sandinmm.eurosky.social · 08/05/2025
Despite 150+ years of Radiolaria diversity research, we have just scratched the surface. Nearly half of Radiolaria diversity might be naked hiding in plain sight! We unveiled the diversity and evolution of Radiolaria beyond "the stars of the ocean" doi.org/10.1016/j.cu...
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Fabien Burki @fburki.bsky.social · 07/05/2025
Congrats @sandinmm.bsky.social et al, very nice paper: www.cell.com/current-biol... #protistsonsky
cell.com
Extant diversity, biogeography, and evolutionary history of Radiolaria
Sandin et al. reveal a vast, overlooked molecular diversity of Radiolaria, likely skeleton-less, contrasting the traditional view of their star-shaped skeleton. Such comprehensive Radiolaria diversity...
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Miguel Méndez Sandín @sandinmm.eurosky.social · 05/05/2025
Why do some planktonic protists develop a gelatinous matrix? We suggest that this original adaptation is a strategy to cope with ocean oligotrophy: doi.org/10.1111/1462... Led by @n-llopis-m.bsky.social, and thanks to all co-authors, I'm very happy to finally see it out! #protistsonsky
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SAME18-BCN @same18-bcn.bsky.social · 22/03/2025
🌊 Save the Date! 🌍 #SAME18 — Aquatic Microbiomes on a Changing Planet 📍 Barcelona, Spain | 🗓️ Sept 28 – Oct 3, 2025 At the iconic PRBB 🧬🌿 Join us to explore the frontiers of aquatic microbial ecology. 📢 Stay tuned for more info and follow us on Bluesky! #MicrobialEcology #MarineMicrobiology #SAME18
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Fabrice Not @fabnot.bsky.social · 14/03/2025
academic.oup.com/ismej/advanc...
academic.oup.com
Metabolic interdependence and rewiring in Radiolaria-microalgae Photosymbioses
Abstract. Marine planktonic Radiolaria harboring symbiotic microalgae are ubiquitous in the oceans and abundant in oligotrophic areas. In these low-nutrien
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Fabien Burki @fburki.bsky.social · 19/01/2025
Stoked about this manuscript, many years in the making. We present an original resource of ~700 highly curated plastid MAGs of marine pelagic algae. Among these we found a novel deep branching group of plastid genomes; we informally call them leptophytes www.biorxiv.org/content/10.1...
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Reposted by Fabrice Not
Station Biologique de Roscoff / Roscoff Marine Station @sbroscoff.bsky.social · 10/01/2025
La Station Biologique de Roscoff vous souhaite une très belle année 2025 ! Pour cette Année de la Mer, la préservation, la recherche et le partage des connaissances sur l'Océan seront au coeur de nos engagements.
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Miguel Méndez Sandín @sandinmm.eurosky.social · 10/01/2025
Next Monday 13 we have the 6th session of The Life of Retaria Seminar Series! Join us at 08h00 (CET) and discover symbiosis in these wonderful protists with Caroline Juery and @filiphusnik.bsky.social Check it out: thelifeofretaria.github.io #radiolaria #foraminifera #theLifeOfRetaria #protistsonsky
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Fabrice Not @fabnot.bsky.social · 09/12/2024
bmcbiol.biomedcentral.com/articles/10....
bmcbiol.biomedcentral.com
Protists and protistology in the Anthropocene: challenges for a climate and ecological crisis - BMC Biology
Eukaryotic microorganisms, or “protists,” while often inconspicuous, play fundamental roles in the Earth ecosystem, ranging from primary production and nutrient cycling to interactions with human heal...
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Reposted by Fabrice Not
Lucia DI IORIO @diioriolucia1.bsky.social · 22/11/2024
🚨 Job alert! There is still some time! Join the Seaphony team working on marine soundscapes to study key habitats within the European TREC and Biocean5D projects. Job application here: luciadiiorio.site/wp-content/u... #postdoc #acoustics
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Luciana Santoferrara @lusantof.bsky.social · 01/11/2024
Do you like aquatic microbes and computational work? Join my team as a Postdoctoral Researcher! Apply here: hofstra.peopleadmin.com/postings/4504
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Fabien Burki @fburki.bsky.social · 21/11/2023
Difficult to be more #protistsonsky that this. Very cool journals.plos.org/plosbiology/...
journals.plos.org
Openly available illustrations as tools to describe eukaryotic microbial diversity
The microbial world is diverse and critically important to understanding evolution and global ecology, but we lack teaching and communications resources. This Essay provides a series of technical diag...
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