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Eliseo Papa

@eliseopapa.bsky.social
1.5K followers 145 following 22 posts

research engineering @deepmind science | previously #graph #ML for pharma | medicine @ImperialMed engineering @mit_hst

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Reposted by Eliseo Papa
Jeff Dean @jeffdean.bsky.social · 25/03/2025
🥁Introducing Gemini 2.5, our most intelligent model with impressive capabilities in advanced reasoning and coding. Now integrating thinking capabilities, 2.5 Pro Experimental is our most performant Gemini model yet. It’s #1 on the LM Arena leaderboard. 🥇
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Eliseo Papa @eliseopapa.bsky.social · 10/03/2025
Proteasomes make natural antibiotics while breaking down proteins. So cool to see research in new areas revealing another layer of biological complexity. Makes you wonder what else is out there! www.nature.com/articles/d41...
nature.com
Protein waste turned into antibiotics as a defence strategy of human cells
Proteasome cleavage changes during infection to generate antibiotics.
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Reposted by Eliseo Papa
depths of wikipedia @depthsofwikipedia.bsky.social · 19/02/2025
Slashed zero (0̸), a representation of the number 0 (zero) to distinguish it from the letter O
Slashed letter 'O' (O̸), a representation of the letter O to distinguish it from the number 0 (zero)
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Eliseo Papa @eliseopapa.bsky.social · 14/02/2025
nice perspective and a cool 🐟 study! www.nature.com/articles/d41...
nature.com
Does a cell’s gene expression always reflect its function?
Transcriptionally similar neurons can be functionally diverse.
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Reposted by Eliseo Papa
Jeff Dean @jeffdean.bsky.social · 12/02/2025
Delighted to have joined my good friend & colleague Noam Shazeer on a podcast with @dwarkesh.bsky.social for a 2+ hour discussion on early Google, ML hardware, training 1T+ token LLMs in '07, model sparsity, continual learning, and more. Thanks, Noam and Dwarkesh! 🙏 youtu.be/v0gjI__RyCY?...
youtu.be
Jeff Dean & Noam Shazeer – 25 years at Google: from PageRank to AGI
YouTube video by Dwarkesh Patel
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Hannes Stark @hannes-stark.bsky.social · 01/02/2025
Reading group session on Monday: Valentin De Bortoli joins us for his paper "Accelerated Diffusion Models via Speculative Sampling" arxiv.org/abs/2501.05370 On zoom at 9am PT / 12pm ET / 6pm CET: portal.valencelabs.com/logg
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Eliseo Papa @eliseopapa.bsky.social · 26/01/2025
a call to all hardware founders to build josef.cn/blog/uk-talent in the uk 👏
josef.cn
UK's elite hardware talent is being wasted.
Imperial, Oxford, and Cambridge produce world-class engineers. Yet post-graduation, their trajectory is an economic tragedy - and a hidden arbitrage opportunity.
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Eliseo Papa @eliseopapa.bsky.social · 17/01/2025
super cool paper!
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Eliseo Papa @eliseopapa.bsky.social · 17/01/2025
We have been diving into the AMR world and it's fascinating! So many possibilities. Let's see what happens! 🧑‍🔬🧫🧪👨‍💻 www.fleminginitiative.org/post/ai-to-h...
fleminginitiative.org
The Fleming Initiative and Google DeepMind lay the path for AI to help tackle antimicrobial resistance
A new report from the Fleming Initiative and Google DeepMind lays out a vision for the impact that an AI and data-driven approach...
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Hani Goodarzi @genophoria.bsky.social · 13/01/2025
A month ago we @vevotherapeutics.bsky.social announced that we have generated the largest single-cell perturbation atlas in history, Tahoe-100M. Today, we announce that we will fully open-source Tahoe-100M in Feb, as part of a collaboration with NVidia health to train cell state models.
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John Chodera @jchodera.bsky.social · 08/01/2025
Interested in building the future of open source ligand- and structure-based ML models for ADMET prediction? The ARPA-H funded OMSF (@omsf.bsky.social) OpenADMET project is hiring multiple positions to build ML models of ADMET properties and drive informative data collection! openadmet.org/jobs/
openadmet.org
OpenADMET Jobs
Seeking talented scientists for the OpenADMET Consortium
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Reposted by Eliseo Papa
Anshul Kundaje @anshulkundaje.bsky.social · 08/01/2025
Congrats to Johannes Linder, David Kelley et al. on the journal publication of Borzoi - a long context sequence models of RNA-seq coverage profiles with many nice applications for transcriptional & post-transcriptional regulation & variant effect prediction. www.nature.com/articles/s41... 1/
nature.com
Predicting RNA-seq coverage from DNA sequence as a unifying model of gene regulation - Nature Genetics
Borzoi adapts the Enformer sequence-to-expression model to directly predict RNA-seq coverage, enabling the in-silico analysis of variant effects across multiple layers of gene regulation.
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Randall Munroe @xkcd.com · 06/01/2025
Features of Adulthood xkcd.com/3034
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Eliseo Papa @eliseopapa.bsky.social · 19/12/2024
This yearly list is fantastic as usual: medium.com/@tomwhitwell... For example: > To highlight tax evasion, South Korea introduced ugly neon green number plates for company cars worth more than $58,000. Luxury car sales fell 27%. [Song Jung-a]
medium.com
52 things I learned in 2024
This year I took a sabbatical, recorded a podcast with Freakonomics, designed and shipped a tiny modular synthesiser, and learned many learnings. Tom Whitwell designs open source music electronics as…
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Ben Engel @cellarchlab.com · 11/12/2024
#TeamTomo is at it again. Nice look at the conformational cycle of protein folding machinery inside native human cells by the teams of Frydman & Beck 🧪🔬🧶🧬
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Luca Soldaini 🎀 @soldaini.net · 10/12/2024
Turned @dippedrusk.bsky.social 's amazing Vancouver list dippedrusk.com/posts/2024-0... into Google Maps pins: maps.app.goo.gl/nGBbcUAMMixC...
dippedrusk.com
Vagrant's Vancouver | Vagrant Gautam
A non-comprehensive list of places to go and things to do in the Greater Vancouver Area as curated by yours truly over 6 years. Might be outdated so please double-check!
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Zachary Wu @zacharywu.bsky.social · 08/12/2024
Lots coming for protein design!
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Marc Lanctot @sharky6000.bsky.social · 06/12/2024
If you will be at #NeurIPS2024 @neuripsconf.bsky.social and would like to come see our models in action, come say hi 👋 and check out our demo at the GDM booth! Wednesday, Dec. 11th @ 9:30-10:00. Lots of other great things to see as well! Check it out: 👇 deepmind.google/discover/blo...
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Tim Rocktäschel @handle.invalid · 04/12/2024
Excited to reveal Genie 2, our most capable foundation world model that, given a single prompt image, can generate an endless variety of action-controllable, playable 3D worlds. Fantastic cross-team effort by the Open-Endedness Team and many other teams at Google DeepMind! 🧞
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Eliseo Papa @eliseopapa.bsky.social · 04/12/2024
constructing good interviews is a never ending quest - here is a quick read on how access to LLMs changes incentives segfaulte.mataroa.blog/blog/hackerr...
segfaulte.mataroa.blog
Hackerrank was broken - but now it's actually harmful — segfaulte
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Marcin Krzyzanowski @krzyzanowskim.com · 03/12/2024
as a kid, i fixed my parent's computer. as an adult I fix my kids's computer. pretty sure we are the only gen that knows how computers work
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Sander Dieleman @sedielem.bsky.social · 28/11/2024
IMO VQGAN is why GANs deserve the NeurIPS test of time award. Suddenly our image representations were an order of magnitude more compact. Absolute game changer for generative modelling at scale, and the basis for latent diffusion models.
arxiv.org
Taming Transformers for High-Resolution Image Synthesis
Designed to learn long-range interactions on sequential data, transformers continue to show state-of-the-art results on a wide variety of tasks. In contrast to CNNs, they contain no inductive bias tha...
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Milot Mirdita @milot.bsky.social · 27/11/2024
MMseqs2 Release 16 Highlights: GPU-accelerated search📄, ORF or new 6-frame translated search modes, contig taxonomy always keeps the longest ORF, bug fixes (reduced memory and higher sensitivity) and relicensed as MIT 📄 biorxiv.org/content/10.1... 💾 mmseqs.com and 🐍Bioconda 🖥️🧬🧶
Promotional logo for MMseqs2 16 with the MMseqs2 Rocket mascot as a smart phone like App logo
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Zachary Lipton @zacharylipton.bsky.social · 27/11/2024
What BlueSky got right that Mastodon got wrong. For the 99% of users that don’t give a FF about federation, it works exactly like old Twitter, and they never need to know. Classic Apple-epitomized design principle: Advanced features should be easy to access but, when unwanted, disappear entirely.
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Eliseo Papa @eliseopapa.bsky.social · 22/11/2024
microbiome perturbation in the gut mapped spatially, how cool
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Reposted by Eliseo Papa
Johannes Bausch @jbausch.bsky.social · 20/11/2024
I'm super excited to share that our work on AlphaQubit, a high accuracy neural network quantum error correction decoder, is now published in Nature! www.nature.com/articles/d41...
nature.com
Quantum computing: physics–AI collaboration quashes quantum errors
Machine-learning strategy for quantum error correction.
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Zachary Wu @zacharywu.bsky.social · 18/11/2024
Come join our London wet-lab team! Deadline to apply is next Wednesday boards.greenhouse.io/deepmind/job...
boards.greenhouse.io
Laboratory Research Scientist, Protein Design, Science
London, UK
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Bosse lab at CSSB Hamburg @bosse-lab.bsky.social · 18/11/2024
The new herpesfolds.org is online! We completely revamped the website and database for smoother browsing! Have a look at proteome-wide herpesvirus structural predictions and all possible protein-protein interactions! Thanks to Malte Kansy and Tim Soh!
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Eliseo Papa @eliseopapa.bsky.social · 18/11/2024
DeepMind - AI for science livestream! www.youtube.com/live/XvUbyQo...
youtube.com
YouTube
Share your videos with friends, family, and the world
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Reposted by Eliseo Papa
Zamin Iqbal @zaminiqbal.bsky.social · 15/11/2024
Latest data from AllTheBacteria described in our updated preprint. All illumina WGS bacterial+archaeal sequence data to Aug 2024 consistently assembled, QC, and now AMR profiling. That's 2.4 million genomes. Gene annotations almost done , coming next. Please use! www.biorxiv.org/content/10.1...
biorxiv.org
AllTheBacteria - all bacterial genomes assembled, available and searchable
The bacterial sequence data publicly available at the global DNA archives is a vast source of information on the evolution of bacteria and their mobile elements. However, most of it is either unassemb...
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Erin Grievances @erinbartram.bsky.social · 12/11/2024
I feel like this site's demographics can be described as "still mad about the loss of Google Reader"
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Eliseo Papa @eliseopapa.bsky.social · 07/11/2024
why has every podcast now become a conversation? two microphones, in a room, talking. often for hours, no editing. i miss when most of them were stories, shaped and edited by producers.
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Randall Munroe @xkcd.com · 05/11/2024
Probabilistic Uncertainty xkcd.com/3007
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Eliseo Papa @eliseopapa.bsky.social · 01/11/2024
news.mit.edu/2024/solar-p... is the kind of good tech news I like reading about
news.mit.edu
Solar-powered desalination system requires no extra batteries
MIT engineers built a solar-powered desalination system that produces large quantities of clean water despite variations in sunlight throughout the day. Because it requires no extra batteries, it offe...
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