Reposted by Duncan NgMat Beale @typemat12.bsky.social · 09/07/2026Pleased to share our paper on low cost amplicon methods, part of a collaboration between the Sanger Institute and researchers at BRTI in Zimbabwe and NICD in South Africa www.nature.com/articles/s41...nature.comPhylo-Plex: a phylogenetically informed, low-cost amplicon sequencing platform for deployable high-resolution genomic epidemiology - Nature CommunicationsWhole genome sequencing of pathogens is costly to implement, and partial sequencing sacrifices information. Here, the authors present Phylo-Plex, a method for identifying information-rich genomic regi... 1102
Reposted by Duncan NgTracy Palmer @proftracypalmer.bsky.social · 24/06/2026Check out our latest T7SS toxin story. These reverse toxins aren’t as rare as we thought! 16233
Reposted by Duncan NgPedro Leão @pedroleao.bsky.social · 05/06/2026I'm happy to share the first pre-print of out Lab! 🎉 Introducing ArchaeaHQ www.biorxiv.org/content/10.6... We curated 21,644 genomes across all 4 archaeal kingdoms to bridge the gap in public datasets for computational biology What is inside ArchaeaHQ... (1/2) 310336
Reposted by Duncan NgKatharine Hayhoe @katharinehayhoe.com · 30/05/2026I’m a climate scientist. Let me fix this headline. “Nearly a century ago, scientists showed that burning fossil fuels warms the planet. Today, we know human emissions account for over 100% of the warming. Yet dark money and disinformation still work to keep Americans addicted to fossil fuels.” 380153245991
Reposted by Duncan NgChantzy @chantzy.bsky.social · 30/05/2026A study of 750 Ebola survivors in the DRC found close to 90% had long-term symptoms despite receiving treatments such as monoclonal antibodies. Symptoms persisted for >3 years The public health response always seems to focus on death as the only bad outcome academic.oup.com/ofid/article... 814262
Duncan Ng @duncan-ng.bsky.social · 28/05/2026Superparamagnetic macrophages and yet this is how they make a nest 040
Reposted by Duncan NgMichael Baym @baym.lol · 28/05/2026This is very cool: a simple statistical test of dysbiosis, or really any microbiome composition data relative to a reference. Outperforms Bray-Curtis and every other metric, while simultaneously being very simple to compute. Probably would work on RNAseq data too. 06016
Reposted by Duncan NgMarta Lourenço @martalourenco21.bsky.social · 28/05/2026🧵 New preprint out! We asked: what happens to gut bacteria when the intestine is under chronic inflammation (IBD)? Turns out, the host's inflammatory state reshapes how they evolve, and the results are pretty striking. A thread 👇biorxiv.org 33416
Reposted by Duncan NgJacob Aron @jjaron.bsky.social · 27/05/2026The fact that Blair thinks this is a genuine dichotomy, when in reality renewables have never been cheaper and fossil fuels are increasingly expensive, suggests he really isn't paying attention institute.global/insights/pol... 2826958
Reposted by Duncan NgIan M. Mackay, PhD (he/him) 🦠🤧🧬📑🦟🧀 @mackayim.bsky.social · 26/05/2026I know, you've always wanted to know... 2175
Reposted by Duncan Ngc0nc0rdance @c0nc0rdance.bsky.social · 25/05/2026Sometimes biologists will discover some remote mountain lake, fed by snowmelt & unconnected from any river system. And it will be teeming with fish. Of multiple species. The next question is, obviously: how did they GET there? And the answer, we think, is "duck poop."static.klipy.comConfused Duck Close-UpAlt: A white duck appears from all angles in rapid succession, but always above the camera or observer, looking down at the viewer with quizzical looks. The rapid cuts between shots make the whole thing comical, like a curious and confused duck is spying on you. 725060
Reposted by Duncan NgCourtney Milan @courtneymilan.com · 25/05/2026Look, my experience was that in order to get tenure, people are told to pipe down and let it ride and the end result is that the process of getting yourself across the finish line selects for people averse to speaking up. 726226
Reposted by Duncan NgJon Phillips @jowiph.bsky.social · 25/05/2026It continues to be hilarious that so many people consider "unfair biological advantages" in sports to be the most urgent social issue facing society, and literally none of them mean this guy. 35313
Duncan Ng @duncan-ng.bsky.social · 25/05/2026We are still a month away from astrological summer 🫠media.tenor.coma cartoon dog is sitting at a table with a cup of coffee surrounded by fire .ALT: a cartoon dog is sitting at a table with a cup of coffee surrounded by fire . 150
Reposted by Duncan NgZamin Iqbal @zaminiqbal.bsky.social · 25/05/2026This is awful to hear, describing how Sean Eddy (HMMER, infernal, pfam, rfam) has been defunded. The letter said his work "had been determined to be of absolutely no value to the US taxpayer, and therefore it was being specifically terminated," www.npr.org/2026/05/21/n...npr.orgResearchers say the Trump administration is finding new ways to punish scienceEven with federal grants largely restored, scientists say the Trump administration is still preventing those funds from reaching them. The consequences, they say, are already becoming clear. 7144112
Reposted by Duncan NgAshkaan K. Fahimipour @akfbio.bsky.social · 22/05/2026Reptiles with longer Wikipedia pages tend to be bigger. The relationship is a power law with exponent = 0.85. I guess humans really like writing about big lizards? The longest article is the Komodo Dragon. 13348117
Reposted by Duncan NgThe Museum of English Rural Life (MERL) @themerl.bsky.social · 21/05/2026*strikes 'mutant super pig population' off the 2027 bingo card* 15528100
Reposted by Duncan NgPatrick "Inverted Vibe Curve" Blanchfield @patblanchfield.bsky.social · 20/05/2026academics trying to normalize acceptance of AI hallucinated citations in their field: do you seriously expect me to show my work and check my work me, baffled, a naïf, a fool: yes that’s why it’s called *your* *work* 7686117
Reposted by Duncan NgMarc Veldhoen @marcveld.bsky.social · 20/05/2026Updated to May 18th, 2026. It is interesting to see a potential pattern emerging. Too early to be sure and this can change, yet... Within the major virus season, when Influenza, RSV and coronaviruses are most prominent, SARS-CoV-2 seems to be pushed out. 1/4 22510
Duncan Ng @duncan-ng.bsky.social · 20/05/2026static.klipy.comThis Is Fine MemeAlt: This Is Fine Meme 041
Reposted by Duncan NgKristian G. Andersen @kgandersen.bsky.social · 19/05/2026"Africa CDC’s position is clear: generalised travel restrictions and border closures are not the solution to outbreaks. Such measures can create fear, damage economies, discourage transparency, complicate humanitarian and health operations, and divert movement toward informal and unmonitored routes" 12016
Reposted by Duncan NgAndrew Sissons @acjsissons.bsky.social · 19/05/2026I’m amazed anyone needs reminding of this, but local government spending power per person fell by 18% from 2010 to 2024 (would have been 26% but for increases in council tax). At the same time, social care pressures on local govt have grown a lot. The decay of the public realm is NOT a mysteryifs.org.ukHow have English councils’ funding and spending changed? 2010 to 2024 | Institute for Fiscal StudiesIncreases in council funding over the last parliament have not reversed big cuts made during the 2010s, with spending on many services still down 40%. 10473249
Reposted by Duncan NgHank Green @hankgreen.bsky.social · 19/05/2026When your field is not particularly large... 57178466
Reposted by Duncan NgCharlotte Houldcroft @virologyhouldcroft.bsky.social · 18/05/2026Should we not be worrying more about the many DRC and Ugandan citizens who have been exposed? www.bbc.co.uk/news/article...bbc.co.ukAt least six Americans exposed to Ebola during DR Congo outbreakOne of the six Americans believed to have been exposed is experiencing symptoms, according to media reports. 063
Reposted by Duncan NgSholto David @sholtodavid.bsky.social · 17/05/2026Surprised to discover that Thermo Fisher appears to show a fake western blot for the validation of one of their p53 antibodies. I've added a diagram to show the very similar bands. This does not appear to be one of the "published figures" but their own internal data. 22272114
Reposted by Duncan NgNick Loman @pathogenomenick.bsky.social · 16/05/2026Rapid release of multiplex PCR amplicon scheme for Andes hantavirus whole genome sequencing validated on control material: www.biorxiv.org/content/10.6... @scalene.bsky.social @stevepullan.bsky.social @ukhsa.bsky.social output from HPRU in Public Health Genomicsbiorxiv.org 15028
Reposted by Duncan NgWill Ratcliff @wcratcliff.bsky.social · 13/05/20261/23 New preprint! Been thinking about the origin of cellular life. Specifically, how protocells (or *any* compartments) just aren't enough to support the evolution of increasingly complex cells. You gotta de-Darwinize the parts! The ribosome/genome do this. www.biorxiv.org/content/10.6...biorxiv.org 313344
Duncan Ng @duncan-ng.bsky.social · 13/05/2026Proteomics from 0.4 million years old sample! 🤯 www.nature.com/articles/s41...nature.comEnamel proteins from six Homo erectus specimens across China - NaturePalaeoproteomic analysis of ancient enamel proteins extracted from Middle Pleistocene Homo erectus specimens from the Zhoukoudian, Hexian and Sunjiadong sites in China suggests that they are a ne... 120
Reposted by Duncan NgMaryse Berkhout @maryseberkhout.bsky.social · 11/05/2026Does mucin type affect a human gut microbial community? The short answer: Yes!💡 The long answer: 📖 doi.org/10.1111/1462... I am happy to share that the final chapter of my PhD thesis has been published in Environmental Microbiology.🦠 #microsky #microbiomesky #glycotime #mucin #mucus #akkermansiadoi.orgMucin Type Drives Composition and Mucin Glycan Degradation of an In Vitro Synthetic Microbial CommunityThe human gut outer mucus layer hosts specific microbes. Using a synthetic mucin glycan-degrading microbial community to mimic this mucosal microbiome, we show that mucin type affects microbial commu... 0254
Duncan Ng @duncan-ng.bsky.social · 08/05/2026I made the mistake of reading the comments of the local Facebook group. A lot of people do not know what local councillors do and it shows 🫠 020
Reposted by Duncan NgAdam Kucharski @adamjkucharski.bsky.social · 08/05/2026Lots of posts using the 2020 NEJM superspreading event paper as estimate of typical hantavirus transmissibility. Reminder that superspreading events are by definition an outlier. If you want to estimate transmissibility you need to look at ALL infections, not just cherry pick tail of distribution. 13512
Reposted by Duncan NgNick Loman @pathogenomenick.bsky.social · 08/05/2026First genome sequence from Andes hantavirus strain from ongoing ship outbreak posted on Virological: virological.org/t/complete-s... courtesy Swiss National Reference Centre for Emerging Viral Infections, Geneva University Hospitals, University of Zurichvirological.orgComplete sequence of Orthohantavirus andesense virus: Swiss resident 2026Posted on behalf of the Swiss National Reference Center for Emerging Viral Infections, Geneva University Hospitals and the Institute of Medical Virology, University of Zurich (Partner Laboratory Natio... 510854
Duncan Ng @duncan-ng.bsky.social · 08/05/2026Looking at the local election results in my area and truly 0101
Reposted by Duncan NgIn Otter News @in-otter-news.bsky.social · 21/04/2026Oh no! A leaf has fallen on Steve! Somebody PLEASE HELP!! 1647643
Reposted by Duncan Ngmolly conger @socialistdogmom.bsky.social · 21/04/2026birds: they will never email you. and that’s a promise. 251239208
Reposted by Duncan NgTobias Wilson-Bates @phdhurtbrain.bsky.social · 20/04/2026“We must learn to live peacefully live the gentle dolphin” Marine Biologist: these species of dolphin are entirely covered in scars from fighting all day every day. They hunt sharks for fun and the juveniles get high off of puffer fish. 1241467
Duncan Ng @duncan-ng.bsky.social · 16/04/2026Speaker at a conference: it’s a good thing there’s a method published a few years ago. *Refers to a paper published in 2011* M8, that’s 15 years ago 🫠 100
Duncan Ng @duncan-ng.bsky.social · 15/04/2026Now comes the annual “do I want to redo all my analysis with the new database” 🙂↔️ 010
Duncan Ng @duncan-ng.bsky.social · 12/04/2026The salmon of knowledge refused to share its knowledge 😤 2160
Reposted by Duncan Ng👻madeline bOoOoOoOodent👻 @oldenoughtosay.com · 11/04/2026New nominative determinism just dropped 316320
Duncan Ng @duncan-ng.bsky.social · 11/04/2026All libraries need a fluffy dog. I don’t make the rules 1264
Duncan Ng @duncan-ng.bsky.social · 11/04/2026When in Belfast, do the fastest parkrun course in the UK 🏃🏽♂️⚡️ 1150
Reposted by Duncan NgColin Carlson @colincarlson.bsky.social · 09/04/2026New in @science.org ‼️ In the most comprehensive study to date, we show that wildlife trade is driving animal-to-human zoonotic spillover at a planetary scale, with +1 spillover per host every 10 years. Live animal markets and illegal trade pose even greater risks. 🔓 www.science.org/doi/10.1126/... 10709362
Duncan Ng @duncan-ng.bsky.social · 10/04/2026First skeet in a while. Travelling to #microbio26 today and met this blind baby with a bow 💝 291