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Chris Dagdigian

@dagdigian.com
325 followers 289 following 184 posts

Life science informatics, Research IT & HPC infrastructure geek, #AWS cloud nerd & accidental entrepreneur @ bioteam.net. He/him. Find me in Boston or Western Maine (Bethel area), where I'm transitioning from nerd to Tractor Guy / meadow planter

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Chris Dagdigian @dagdigian.com · 24/07/2026
#anthropic #fable biosecurity classifiers suck. I've been booted out of Fable for: - editing download URL to the latest version of CryoSPARC analysis suite - edited an ansible playbook that installs dozens of R packages most commonly used by life scientists - had "bioteam" name in a playbook
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Chris Dagdigian @dagdigian.com · 12/06/2026
Been telling #AWS #HPC people for a while that old parallelcluster stacks are gonna start breaking soon and have spent weeks upgrading client systems only to discover that AWS pushed the break-date into 2027 thanfully. Blog writeup at bioteam.net/blog/tech/cl...
bioteam.net
Your old AWS ParallelCluster stacks will NOT break in 2026 - BioTeam
Note: This post is pure google bait designed to help others who run into the same problem. We hope it helps!
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Chris Dagdigian @dagdigian.com · 14/03/2026
I get outside, sometimes. Bethel Woodbank going strong. #maine
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Chris Dagdigian @dagdigian.com · 12/03/2026
If you do #HPC on #AWS via #ParallelCluster then check your versions. A ton of old HPC clusters are gonna fall over in June 2026 when AWS deprecates an old python runtime in Lamda. I've done 3 client upgrades this month and expect more to come ...
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Chris Dagdigian @dagdigian.com · 28/02/2026
#meshcore repeater and #meshtastic router_late role solar fixed nodes up and running in west bethel #maine — trying to grow the LORa mesh in western Maine. Also picked up a pair of Thinknode M5 portable units to use as my Bluetooth tethered clients
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Chris Dagdigian @dagdigian.com · 26/01/2026
Blog post covering some recent experimentation with AWS ParallelCluster monitoring/alerting via Cloudwatch Subscription Filters wired up to a Slack channel via webhook
bioteam.net
AWS Parallelcluster Monitoring - BioTeam
Stop finding out about HPC cluster problems from frustrated users. This post walks through some basic experiments with a Terraform-based approach to proactive AWS ParallelCluster monitoring, using Clo...
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Chris Dagdigian @dagdigian.com · 22/01/2026
Claude code is surprisingly good at sanity checking AWS ParallelCluster HPC config files. When paired with the MCP that queries instances.vantage.sh it can validate ec2 server config and even provide summarized cost updates on what each compute node config change will cost.
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Chris Dagdigian @dagdigian.com · 18/01/2026
Timelapse from the volunteer wood bank splitting session. 24 cords cut and split. Goal is to get to 80 cords this year. Lots more trees on the way so clearing the current pile of rounds was a huge milestone.
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Chris Dagdigian @dagdigian.com · 14/01/2026
Cory with another banger. Coding a rude agentic AI responder to the marketers overusing mail campaign automation. His AI Platypus named Billie can reply rudely in his place
lastweekinaws.com
I Hope This Email Finds You Before I Do
I Hope This Email Finds You Before I Do
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Chris Dagdigian @dagdigian.com · 24/12/2025
TImelapse Art: Idiot on Tractor, 2025
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Chris Dagdigian @dagdigian.com · 15/12/2025
Damn! Nvidia and SchedMD! blogs.nvidia.com/blog/nvidia-...
blogs.nvidia.com
NVIDIA Acquires Open-Source Workload Management Provider SchedMD
NVIDIA will continue to distribute SchedMD’s open-source, vendor-neutral Slurm software, ensuring wide availability for high-performance computing and AI.
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Chris Dagdigian @dagdigian.com · 13/12/2025
Been volunteering at a new local firewood bank in Bethel, ME that is just gettting off the ground. Drove our tractor there 6mi over main roads which was a first. This is a Timelapse of the “rounds crew” who saw full length trees into rounds. The wood splitter teams than process the rounds.
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Chris Dagdigian @dagdigian.com · 15/11/2025
Someome awesome is feeding our little free library box with these handouts
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Reposted by Chris Dagdigian
Tobias Mann @tobiasmann.bsky.social · 14/10/2025
This was a fun review. I don't think folks realize how big a deal the DGX Spark is. A year ago an #Nvidia #workstation with 128GB+ of VRAM cost tens of thousands of dollars. Is it better than AMD's Strix Halo? Now that's the real question. #DGXSpark #AI www.theregister.com/2025/10/14/d...
theregister.com
DGX Spark Nvidia's desktop supercomputer: first look
hands on: This relatively-affordable AI workstation isn’t about going fast; it’s about doing everything well enough
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Chris Dagdigian @dagdigian.com · 14/10/2025
Used the US long holiday weekend to run #AWS #ParallelCluster build-pipeline and cluster deploy through a logging squid HTTP proxy to document internet destinations used -- this helps set firewall rules for orgs that block egress by default in research VPCs
bioteam.net
ParallelCluster, External Destinations & Firewall Rules - BioTeam
When Internet egress is blocked by default inside your cloud environment, what external sites and destinations need to be allowed for AWS Parallelcluster?
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Chris Dagdigian @dagdigian.com · 30/08/2025
Western Maine chores
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Chris Dagdigian @dagdigian.com · 07/08/2025
any #AWS #HPC folks familiar with the managed PCS service who can confirm that when using AWS PCS you can't configure Slurm to be aware of software licenses? Adding license at CLI does not persist & API guide seems to confirm that "SlurmCustomSetting" does not support the "License" param ...
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Chris Dagdigian @dagdigian.com · 05/08/2025
Mural progress. West Bethel, Maine
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Chris Dagdigian @dagdigian.com · 28/06/2025
some cryoEM validation runs via cryosparc.com software integrated with #AWS parallelcluster HPC and using an FSX/Lustre parallel filesystem built from S3 input cryodata bucket via Lustre/S3 data repository associations. Can't do that on-prem!
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Chris Dagdigian @dagdigian.com · 27/06/2025
todays remote office
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Chris Dagdigian @dagdigian.com · 24/06/2025
demo pics; former weed grow. all the drywall and insulation was wet, moldy and full of animal droppings. rented scissor lift goes poof this week so we gotta finish up
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Chris Dagdigian @dagdigian.com · 16/06/2025
indoor & outdoor chores this weekend
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Reposted by Chris Dagdigian
el gatito @elgatito.bsky.social · 05/06/2025
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Chris Dagdigian @dagdigian.com · 17/05/2025
Dirtwork when weather allowed, indoor demo when rain got too heavy
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Chris Dagdigian @dagdigian.com · 04/05/2025
The maverick hybrid truck was just to be for high MPG errand running and dump runs …. But I needed a rock bucket for the tractor and saw a sweet hydraulic dump trailer on dealer lot…. guess I tow stuff now. Swore I’d never own anything that could tow, hah!
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Chris Dagdigian @dagdigian.com · 29/04/2025
Tractor and mini excavator stuff today
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Chris Dagdigian @dagdigian.com · 19/04/2025
Still the coolest critter thing we’ve found at the Maine spot this year
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Chris Dagdigian @dagdigian.com · 18/04/2025
@techaro.lol users of spack just became collateral damage in the anti AI-scraping wars. All I'm trying to do is use spack.io to compile relion.readthedocs.io/en/release-5... for CryoEM analysis on an HPC cluster. I know this is not your fault of course but wanted to point out an edge case
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Chris Dagdigian @dagdigian.com · 18/04/2025
Found one other #meshtastic node while out on a coffee run today. Three are mine hah
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Chris Dagdigian @dagdigian.com · 16/04/2025
NYT gift link, no paywall
nytimes.com
How an Anime Master Perfects the Cool Guy Action Hero (Gift Article)
The protagonists in the shows created by Shinichiro Watanabe have smooth style, eclectic moves and a sense of swagger.
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Chris Dagdigian @dagdigian.com · 12/04/2025
Indoor chores on this rainy and snowy day
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Chris Dagdigian @dagdigian.com · 09/04/2025
#muderbot trailer !!!!! youtu.be/vEioDeOiqEs?...
youtu.be
Murderbot — Official Trailer | Apple TV+
YouTube video by Apple TV
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Chris Dagdigian @dagdigian.com · 05/04/2025
western Maine project continues. When this was a gravel pit they piled the good topsoil in one spot but it got overgrown w/ sumac & weeds. Eventually we are gonna rent a big ass screening machine to separate out good dirt from rocks/trash and use the lovely soil for meadow planting & remediation.
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Chris Dagdigian @dagdigian.com · 29/03/2025
No longer just a “tractor guy” as the Chinese mini excavator arrived. Midlife crisis takes many forms, heh. This is the ECE CTX8012 Pro model. 1.5 ton diesel w/ all the features I wanted like swing boom, aux hydraulics, two speed tracking, expanding tracks & quick hitch
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Chris Dagdigian @dagdigian.com · 22/03/2025
So this happened … Mother Nature is lit.
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Chris Dagdigian @dagdigian.com · 10/03/2025
Speedrunning regaining my expired #aws certs. Got five in five days, although two were the foundational tier exams. Gonna pause and study hard for the next series. I want Architect Professional, SysOps Professional and the Security Specialty certs next. AWS Professional exams are *hard* though
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Reposted by Chris Dagdigian
Ethan @ethanrosenthal.com · 08/03/2025
I cynically joke about companies wanting to use LLMs because they don’t know how to build a proper UI, but actually this is a perfect use case
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Chris Dagdigian @dagdigian.com · 07/03/2025
Annoyed that I let all my #AWS professional, associate and foundational certifications expire out of laziness so I just booked 4 remote proctored exams in 4 days. Gonna clear the foundation/associate ones before taking the Professional exams later.
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Chris Dagdigian @dagdigian.com · 02/03/2025
#unifi #ubnt nerd stack rebuilt at the commercial lot we are rehabbing. Paired a second UBB wireless radio bridge so we can put APs and cameras up on a third building. Radios links are *fast*. All managed via @hostifi.com
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Chris Dagdigian @dagdigian.com · 23/02/2025
I do a lot of #HPC clusters running #AWS #Parallelcluster for computational chemistry, specifically integrating it with the www.schrodinger.com small molecule & molecular dynamics tools. Wallclock time to create a new on-demand GPU node & scale it in for a job was 4min 9sec. Fastest yet!
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Chris Dagdigian @dagdigian.com · 21/02/2025
Date night
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Chris Dagdigian @dagdigian.com · 21/02/2025
I used to post google bait on that other site that would allow people experiencing the same problem I had to find a potential solution. Lets see if this works on bsky. Gonna post a multi-post thread on the most opaque #AWS #Parallelcluster #HPC debugging hassle I (very occasionally) encounter ...
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Chris Dagdigian @dagdigian.com · 11/02/2025
Every day I do a “old man walk”so I don’t spend all day sedentary at a keyboard this week it’s all been snowshoe. Normally I go at dusk but today was early enough to get good pics of the tracks left behind
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Chris Dagdigian @dagdigian.com · 09/02/2025
first building we are rehabbing on the 12acre commercial lot. New roof & solar already in. weed growers trashed it, all drywall and insulation was moldy & they covered the beautiful windows. nice to see it opened up! And opening up the windows makes a huge difference #Maine #BethelMaine
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Chris Dagdigian @dagdigian.com · 09/02/2025
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Chris Dagdigian @dagdigian.com · 02/02/2025
After chores
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Chris Dagdigian @dagdigian.com · 02/02/2025
Chores
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Chris Dagdigian @dagdigian.com · 01/02/2025
14 years ago we made snowbank monster #2 after a big storm
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Chris Dagdigian @dagdigian.com · 30/01/2025
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Reposted by Chris Dagdigian
Glenn K. Lockwood @glennklockwood.com · 29/01/2025
I work on the biggest GPU supercomputers on the planet, and none use a parallel file system, full stop. As Jeff says, file-based storage offers nothing uniquely useful to training. Files are for people, and no people are touching data when training at scale.
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