Ira Zibbu @coolscootre.bsky.social · 07/10/2026with the hopes that exposure and education can help them understand. What we should not do is let those stances drive the agenda of liberal movements. 000
Ira Zibbu @coolscootre.bsky.social · 07/10/2026More importantly trans people and women and other minorities are not to be treated as sacrificial lambs. I'm not talking about purity testing individuals; we can let people with imperfect stances and politics into the movement, 100
Ira Zibbu @coolscootre.bsky.social · 07/10/2026Reminds me of that maddening time when Ezra Klein suggested liberals should give up on abortion rights when running candidates in certain states. Why the hell would people vote for your diet misogyny when you can have full on misogyny? 110
Ira Zibbu @coolscootre.bsky.social · 07/10/2026I've never understood the logic of "if we just make XYZ trans issue palatable in ABC manner, we will gain our rights." Why the hell would they go for your offering of diet transphobia when they have just have full on transphobia? 100
Ira Zibbu @coolscootre.bsky.social · 07/10/2026They ask me to contact the city police, but at this point I don't even care anymore. Neither was willing to even make a report. They will punt you around because they fundamentally view you as a nuisance & a liability. 191
Ira Zibbu @coolscootre.bsky.social · 07/10/2026 I filed a report with the Title IX office, but they said since it happened off campus they could not help me. They asked me to contact campus police, and I call them, but they said it happened off campus so they could not help me. 161
Ira Zibbu @coolscootre.bsky.social · 07/10/2026I've had this happen to me. Got street harrassed by two college-aged men who were clearly students. I had their license plate, a description of their appearance, and the date and time of the event. 151
Ira Zibbu @coolscootre.bsky.social · 07/10/2026"Before her death, she reported her killer for stalking and other abuse both to campus police and the Salt Lake City Police Department. But because some of it occurred on campus and some off campus, because she lived on campus but he didn’t, neither police jurisdiction would take her case." 171
Ira Zibbu @coolscootre.bsky.social · 07/10/2026"If the violence happened on campus, you are going to have a very hard time with your city’s police department due to jurisdiction and vice versa. This happened with Lauren McCluskey, a University of Utah student who was murdered by her ex-boyfriend in 2018..." 12110
Reposted by Ira ZibbuDolphin Pilot @theamitie.bsky.social · 06/10/2026It’s so weird Rowling is anti-trans when she’s written a book with a man’s pseudonym 2172
Ira Zibbu @coolscootre.bsky.social · 02/10/2026I've always wondered by Lorenz has normal progressive beliefs but is willing to die on this weird (and unscientific hill) about social media. In hindsight the answer is obvious now that you point it out 110
Ira Zibbu @coolscootre.bsky.social · 02/10/2026thewire.in/history/reme...thewire.inRemembering Bhagat Singh as One of India's Foremost 'Dimaagi Naxals'The revolutionary's legacy rests as much in his commitment to reason, secularism and socialism as in the martyrdom he is most remembered for. 000
Reposted by Ira ZibbuSimons Foundation @simonsfoundation.org · 01/10/2026We're committing $23M over 5 years to support research excellence at HBCUs through two new grants: the HBCU Centers of Excellence Program and the HBCU Faculty Fellowship Program. Now accepting applications: bit.ly/4zu6OdB #science #math #fundingbit.lyApply Now: New Grants to Support HBCU Faculty and Research ExcellenceApply Now: New Grants to Support HBCU Faculty and Research Excellence on Simons Foundation 02715
Ira Zibbu @coolscootre.bsky.social · 30/09/2026- The right edge is unsafe or reasonably unusable because of things like debris, poor pavement, drain grates, parked/moving vehicles, pedestrians, animals, etc. - You're in a right-turn lane but going straight through the intersection. 111
Ira Zibbu @coolscootre.bsky.social · 30/09/2026Also! If you live in Michigan, there is NOT A SINGLE PIECE OF LAW that prohibits a cyclist from being in the main road (and not in the bike lane if one is present). In fact, here is a non-exhaustive list of reasons why: - Passing another cyclist or vehicle. - Preparing to turn left. 120
Ira Zibbu @coolscootre.bsky.social · 30/09/2026I was once pulled up to an intersection on my bike and a man rolled his window down from his car and told me I shouldn't be in that lane but instead in the bike lane. Ladies and gents there is no bike lane in that 50ft stretch on northbound Abbot Rd south of Saginaw in East Lansing. 140
Ira Zibbu @coolscootre.bsky.social · 29/09/2026Ah, the age old question: do grades matter for graduate school applications and beyond? No. But also yes. irazibbu.substack.com/p/do-grades-...irazibbu.substack.comDo Grades Matter for Graduate School?Short answer: No. But also yes. 032
Reposted by Ira ZibbuTatta Bio @tattabio.bsky.social · 23/09/2026In our preprint released last Friday, we show that evolutionary sequence information learned by our genomic language model, gLM2, can be used to design complex, multi-domain enzymes and expand their chemistry beyond their natural repertoire. 🧵 Preprint: www.biorxiv.org/content/10.6...biorxiv.orgGenerative Design of New-to-nature Biosynthetic Assembly Lines with Genomic Language ModelingReprogramming biosynthetic assembly lines can extend biosynthesis beyond the chemical space explored by nature. However, this remains difficult because assembly-line function depends on coordinated in... 143
Reposted by Ira ZibbuJesse Raab @jraab.bsky.social · 24/09/2026Can't decide if this is hilarious or depressing substack.com/home/post/p-...substack.comOpinion: I Miss When The NIH Payline Was 40% And We All Mouth-Pipetted PhenolBy Dr. Douglas R. Waverly, Professor Emeritus of Biochemistry, Yale University 3186
Ira Zibbu @coolscootre.bsky.social · 24/09/2026en.wikipedia.org/wiki/Shankar... You can hardly read a paper in molecular/cellular biology that does not have some kind of next-gen sequencing.en.wikipedia.orgShankar Balasubramanian - Wikipedia 030
Ira Zibbu @coolscootre.bsky.social · 24/09/2026www.asimov.press/p/theory-bio...asimov.pressOn the Role of Theory in BiologyBiology is often seen as an experimental science, with theory serving to generalize patterns from empirical data. But history reveals that theory plays a more generative role in discovery itself. 0116
Ira Zibbu @coolscootre.bsky.social · 16/09/2026Snakemake has this flag `--keep-going` which tells it to keep running the workflow even if some steps/samples fail. And unironically when I am having a bad day I just say `--keep-going` to myself. 010
Reposted by Ira ZibbuKaren Lloyd @karenlloyd.bsky.social · 16/09/2026I wrote a blog post about aeornophiles for Small Things Considered. smallthingsconsidered.blog/schaechter/2...smallthingsconsidered.blogAeonophilesby Karen G. Lloyd — The story behind some extremely long-lived microbial cells. 22612
Reposted by Ira ZibbuTami Lieberman @contaminatedsci.bsky.social · 08/09/2026Two announcements regarding AccuSNV, which calls high precision SNVs across microbial genomes: Version 1.1 is now incredibly easy to install, run, and perform downstream analyses with (see image of typical output!). The manuscript was also published this summer in Genome Research! Links next... 15725
Ira Zibbu @coolscootre.bsky.social · 08/09/2026I think you all deserve a little Weber and Baudrillard as a treat 000
Ira Zibbu @coolscootre.bsky.social · 08/09/2026www.nature.com/articles/s41... fork found in kitchennature.comHow contemporary academic structures constrain scientific creativity and hold back early-career researchers - Nature Human BehaviourIn this Perspective, Haubrock et al. argue that today’s scientific structures constrain creativity and that strategic conformity is a rational response. They discuss how this holds back early-career researchers from reaching their full potential as scientists. 051
Ira Zibbu @coolscootre.bsky.social · 02/09/2026How do you make the decision do to a PhD? I had some succinct thoughts: irazibbu.substack.com/p/how-did-i-...irazibbu.substack.comHow did I know I wanted to do a PhD?Some thoughts on how to make a crucial decision. 000
Reposted by Ira ZibbuSean Carroll @seanmcarroll.bsky.social · 29/08/2026Ever wonder what "information" really means? Here's our new paper, led by @frosas.bsky.social, that lays out the multiple ways the term is used in natural science. rdcu.be/fCDGv 1325566
Ira Zibbu @coolscootre.bsky.social · 31/08/2026The fact that this time of "poorly understood" nonsense statements proliferate funding applications and papers is beyond me. It is opium for any critical evaluation of impact. The opposite of an intuition pump (say an intuition drain clog). 100
Ira Zibbu @coolscootre.bsky.social · 31/08/2026If you say, "Oh we don't understand X." and I say, "Here is this study about X." Then you can, "Oh, that just shows X.1 to be true, but we don't know anything about X.2" where X.1 and X.2 are some sub-statements of X. We can play this game ad infinitum. 100
Ira Zibbu @coolscootre.bsky.social · 31/08/2026It is not a statement that can be falsified, hence it is "always true". It's the *performance* of epistemic value, not a demonstration of actual value. It's a rhetorical chess move that has no counter move because you can always move the goal post. 100
Ira Zibbu @coolscootre.bsky.social · 31/08/2026Every time I read the statement "XYZ is poorly understood" it pisses me off. It is a non-statement! Everyone says that about their own research. You can always construct a a gap and the sell yourself as the one to fill it. Anything can be "poorly understood." 130
Ira Zibbu @coolscootre.bsky.social · 27/08/2026arxiv.org/abs/2608.16753 I think it is very important for a field like bioinformatics to reckon with generative AI in the same way. Thank you Terry Tao for thisarxiv.orgMathematics in the age of AIAn essay, based on a public lecture delivered at the 2026 International Congress of Mathematicians, on how the mathematical community might respond to the arrival of artificial intelligence tools that... 0113
Ira Zibbu @coolscootre.bsky.social · 27/08/2026he was a ctrl+F boy i said see your l8r boy he wasn't `grep` enough 4 me 000
Reposted by Ira ZibbuCarolyn Bertozzi @carolynbertozzi.bskyverified.social · 27/08/2026🙏 #Dolly www.nature.com/articles/d41...nature.comDolly Parton dies aged 80 — researchers celebrate her contributions to scienceThe country singer was an advocate for vaccines, public health, literacy and marginalized communities. 0568
Reposted by Ira ZibbuRahawa Haile @rahawahaile.bsky.social · 27/08/2026I wrote about Dolly and Appalachia for this week’s Scratch. www.talkscratch.com/dolly-parton...talkscratch.comDolly Parton Loved Being Dolly PartonIt was one of the most important aspects of her art. 113245
Reposted by Ira ZibbuSarah McAnulty, Ph.D. @sarahmackattack.bsky.social · 25/08/2026We need YOU to spread the word about @skypeascientist.bsky.social - our *free* program that matches scientists w/classrooms & more! When educators sign up, they can tell us who told them about us. We'll hold a monthly drawing for $150 of science supplies* from the referrers! SkypeAScientist.com 5146123
Reposted by Ira ZibbuBejaLabTechnion @bejalab.bsky.social · 19/08/2026Pervasive phosphorylation by phage T7 kinase disarms bacterial defences www.nature.com/articles/s41...nature.comPervasive phosphorylation by phage T7 kinase disarms bacterial defences - NatureThe T7 bacteriophage deactivates bacterial defence systems through T7K phosphorylation of nearly all host and phage proteins during infection. 0165
Ira Zibbu @coolscootre.bsky.social · 14/08/2026Most PhD application advice is either (1) generic advice without examples (2) sample materials without explanation. Here I tried to bridge the gap between these two. If you know somebody applying this cycle and may benefit, please share this! ✨ irazibbu.substack.com/p/a-realisti...irazibbu.substack.comA Realistic Guide to Writing a Good PhD Application EssayI revisit, breakdown and explain my own essay to show you what works (and what doesn't). 095
Ira Zibbu @coolscootre.bsky.social · 14/08/2026A lovely read Rich. Reminds me that the time horizon for my work is not this month, this year, or even this decade, but this lifetime. 120
Reposted by Ira Zibbuderek guy @dieworkwear.bsky.social · 13/08/2026I enjoyed this. ordinaryabundance.comordinaryabundance.comOrdinary AbundanceA walk through a modern apartment, through the eyes of the people for whom everything in it was new. 753426910
Ira Zibbu @coolscootre.bsky.social · 12/08/2026I take great pains to never refer to Claude with gendered pronouns, and today it assumed I am a man😔 000
Reposted by Ira ZibbuClaus Wilke @clauswilke.com · 12/08/2026A new paper challenges how we have used protein language models (pLMs) for protein engineering. It suggests that using pLMs as antipredictors (try mutations the model thinks are bad) can generate the best leads for engineering novel function. blog.genesmindsmachines.com/p/protein-la...blog.genesmindsmachines.comProtein language models are overly constrained by covariationWhy good performance on one set of goals can lead to poor performance on another 14812
Ira Zibbu @coolscootre.bsky.social · 11/08/2026My personal nightmare is joining a company/institute that forces me to use Windows/macOS on my work laptop and yells at me when I eventually boot whatever linux distro is scratching my itch at that time 020