Peter Carlton @carltonlab.org · 04/10/2026I've long had a hunch that "able to do nondestructive photochemistry" is at least as big an influence as transmission through water; <300 does better than >600 but might destroy rather than isomerize a photoreceptor molecule. (data from Segelstein, D., 1981: "The Complex Refractive Index of Water") 010
Peter Carlton @carltonlab.org · 28/09/2026Not real data here in this example but I am really enjoying interactive #terminal plotting… 2 tmux panes with ssh replicating ~90% of what I usually do with jupyter. 010
Peter Carlton @carltonlab.org · 25/09/2026I know, and they also swing down into what should be intracellular space?! Here's another one using Grid/Collection stitching (thanks @preibischs.bsky.social !) showing the whole movie. 141
Peter Carlton @carltonlab.org · 23/09/2026You may still need a microscope for raw images, may I suggest this model 120
Peter Carlton @carltonlab.org · 23/09/2026Yeah, they're firing all the lasers directly into the CCD! Or would be, if the beam splitter orientations were correct. Their earlier Nat.Comms paper had a more reasonable, less AI-flavored diagram. 080
Peter Carlton @carltonlab.org · 18/09/2026Registered from the beginning, caveats about compression etc apply of course 292
Peter Carlton @carltonlab.org · 03/09/2026modern terminals are amazing, it hasn't been this good since Tektronix emulation in xterm. 010
Peter Carlton @carltonlab.org · 22/07/2026This is what they took from us (ok, I still have the album, but !) #nusrat #ustadnusratfatehalikhan 020
Peter Carlton @carltonlab.org · 21/07/2026by Jove, I think that's all of them… 30+ more genomes on the way sometime soon, I do hope, but for now here are 54 Caenorhabditis SPO-11s 030
Peter Carlton @carltonlab.org · 08/07/2026Probably too many nuclei are generated in total, but the eggs/apoptosis numbers look good. Here is some simple stem cell lineage tracing - I wonder if this picture is correct, that after a few days all the meiotic cells in a gonad arm descend from a single progenitor? 020
Peter Carlton @carltonlab.org · 07/07/2026Messing around with C. elegans gonad arm simulation, with a goal in mind to reproduce things like RAD-51 focus distribution through the germline 050
Peter Carlton @carltonlab.org · 03/07/2026The vast array of Unicode glyphs should get more attention in command line tools; this is one good use I've found for the box-drawing characters: 000
Peter Carlton @carltonlab.org · 25/06/2026Per fess argent and vert, a gypsy moth larva rampant guardant, armed and langued gules 110
Peter Carlton @carltonlab.org · 29/05/2026Slack webhooks for phenix refinement of alphafold structures, with a unique personality (IYKYK) 010
Peter Carlton @carltonlab.org · 11/05/2026Experimenting with pulling N nearest neighbors (128 here) to a protein of interest in embedding space closer together in 2D UMAP space —the red human dot that approaches SYP-1 is SIX6OS1. The UMAP puts it quite far away to begin with, presumably under the influence of its nearest human neighbors 000
Peter Carlton @carltonlab.org · 30/04/2026You had to go and nerdsnipe me… Now I know you aren't going to add up any of these 4,324 columns of RANDOM integers 010
Peter Carlton @carltonlab.org · 30/04/2026I've done it again, the computer equivalent of running a gel the wrong way 000
Peter Carlton @carltonlab.org · 05/03/2026Circos-style contact maps in ChimeraX: cxtoolshed.rbvi.ucsf.edu/apps/chimera... 020
Peter Carlton @carltonlab.org · 04/03/2026I started a loop counting to 1 trillion (兆) in my terminal last week since my 5yo just learned a bunch of words for higher numbers … it's been fun checking it every morning. It should finish sometime this month! 020
Peter Carlton @carltonlab.org · 02/03/2026I was thrilled finding one of these ↓ in a lab closing giveaway, since it got me through the early 2000s and is still my favorite. 120
Peter Carlton @carltonlab.org · 16/02/2026That's the thing about this sequence, no matter how many you add it's still not "complete"! I chose X and O since it shows self-similarity if you highlight X or O 000
Peter Carlton @carltonlab.org · 27/01/2026It was only -16° up on 八甲田山 田茂萢岳 (Mt Tamoyachi I guess) but the flying shards of ice made it seem more like North Neptune 020
Peter Carlton @carltonlab.org · 27/12/2025My daughter keeps practicing "Sur le Pont d'Avignon" on the piano and each time I think of 010
Peter Carlton @carltonlab.org · 09/12/2025Somehow I can still see these three Fates in Fourier space 010
Peter Carlton @carltonlab.org · 11/11/2025zooming in on some nictating dauers of an unknown (likely Auanema) species 030
Peter Carlton @carltonlab.org · 07/11/2025Dauer larvae of an unidentified, Auanema-like nematode found with a dead beetle (they're nictating on its foreleg making a ghoulish phantom hand) 030
Peter Carlton @carltonlab.org · 04/11/2025This weekend I examined some nematodes I found in a dead beetle in my yard — from the zigzag pattern of intestine cells I think it might be an Auanema (famous for having 3 sexual morphs: males, females, and hermaphrodites) species, but will have to check the sequence to know for sure: 011
Peter Carlton @carltonlab.org · 20/10/2025I knew it was the season (they migrate up from the Okinawa islands around now), and had it in the back of my mind I might see one, but it was just a weekend trail run to the lab to do some worm maintenance, so very fortunate… I think I manage to see one of these once every 2-3 years 000
Peter Carlton @carltonlab.org · 20/10/2025I ran down to Kyoto from the hills yesterday and was rewarded with the sight of a Chestnut Tiger · Parantica sita · アサギマダラ floating through the KU campus 141
Peter Carlton @carltonlab.org · 19/10/2025I struggle with Fiji's non-user-friendliness a lot. For 2 images, the "Pairwise Stitching" tool might be the most straightforward. The only controllable parameter is "check peaks". The ImageJ wiki link is: imagej.net/imagej-wiki-... It worked on two cropped regions here (one rotated and blurred) 100
Peter Carlton @carltonlab.org · 11/10/2025yes, the continuation and attempted perfection of a long-enduring theme, pointed out by Nietzsche among others— 0141
Peter Carlton @carltonlab.org · 11/10/2025Took a late afternoon hike through the woods down to Kyoto with the kids today — I couldn't manage to focus well but there was absolutely a persistent, full-color rainbow streaking through this (ジョロウグモ) spiderweb! About 3 in the afternoon with the sun already getting low. 020
Peter Carlton @carltonlab.org · 09/10/2025"the girlfriend of one of the founders of Antifa" (disclaimer: I am also a card-carrying member of Antifa.) 011
Peter Carlton @carltonlab.org · 09/10/2025A selenium-binding protein contains the sequence "SELEN…" - OK, not that surprising, I guess. Are there any unlikely coincidences in a protein sequence akin to the prescient name of Su(var)3-9? A kinase that has "KINASE" as part of its sequence for example. 130
Peter Carlton @carltonlab.org · 30/09/2025One day, a stranger arrived at the island and said "One of you has blue eyes". 010
Peter Carlton @carltonlab.org · 30/09/2025At a calligraphy exhibition in Kyoto 2 weeks ago, two extreme points in a continuum. 020
Peter Carlton @carltonlab.org · 27/09/2025If Trump goes too far, the Supreme Court will simply stop him 000
Peter Carlton @carltonlab.org · 25/09/2025Just got back from an excellent week-long family trip to Ishigaki island, and despite the passing of a typhoon nearby we thoroughly enjoyed the ocean. This year the suzumedai / スズメダイ (damselfish?) were very bitey, and I came back with a bit less skin on my legs than I started with! 010
Peter Carlton @carltonlab.org · 14/09/2025One of my most prized posessions is this book, a 五體字類 dictionary showing many examples of 5 styles of of each 漢字. Among its superlatives must rank its approach to text layout: basically, "fuck it, we'll print the best examples as big as possible". LaTeX will not touch this for centuries to come. 060