Bruno Contreras Moreira @brunocontrerasm.bsky.social · 11/09/2026bioinfoperl.blogspot.com/2026/09/rsat...bioinfoperl.blogspot.comRSAT Plants requires registration for now 001
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 28/08/2026The RSAT plants server at plants.rsat.eu and rsat.eead.csic.es/plants will be off for a few days due to security updates, sorry for the inconvenienceplants.rsat.eu 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 11/08/2026Barleymap (barleymap.eead.csic.es/barleymap), a Web tool for mapping the position of genetic markers along maps of the barley genome, has been updated and now it supports graph searches over the Pan20 barley pangenome: bioinfoperl.blogspot.com/2026/08/barl...barleymap.eead.csic.esBarleymap 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 31/07/2026Pruebo minibwa: bioinfoperl.blogspot.com/2026/07/prue...bioinfoperl.blogspot.comPruebo minibwaIdeas y código para problemas de genómica de plantas, biología computacional y estructural 010
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 09/06/2026bioinfoperl.blogspot.com/2026/06/comp...bioinfoperl.blogspot.comComprime y consulta ficheros FASTA con agc 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 27/04/2026bioinfoperl.blogspot.com/2026/04/nota...bioinfoperl.blogspot.comNotas de la 3ª asamblea general de la conexiónBCB del CSIC 010
Reposted by Bruno Contreras MoreiraNew Phytologist @newphyt.bsky.social · 14/04/2026New insights uncover broader functions of HvVRN2 in barley flowering and adaptation Montardit-Tarda et al. @fmontardittarda.bsky.social @philippaborrill.bsky.social nph.onlinelibrary.wiley.com/doi/10.1111/... 044
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 31/03/2026bioinfoperl.blogspot.com/2026/03/obte...bioinfoperl.blogspot.comObtén taxonomías del NCBI desde el terminal 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 04/03/2026bioinfoperl.blogspot.com/2026/03/foot...bioinfoperl.blogspot.comfootprintDB March 2026 version 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 18/02/2026bioinfoperl.blogspot.com/2026/02/iv-j...bioinfoperl.blogspot.comIV Jornada de Bioinformática en Aragón 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 19/01/2026bioinfoperl.blogspot.com/2026/01/adio...bioinfoperl.blogspot.comadiós a Peer Bork 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 08/01/2026bioinfoperl.blogspot.com/2026/01/blas...bioinfoperl.blogspot.comNCBI Blast 2.17.0+ es más rápido y acepta FASTAs comprimidos 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 07/01/2026bioinfoperl.blogspot.com/2026/01/pare...bioinfoperl.blogspot.comParecidos ocultos entre proteínas revelados por inmersión 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 19/12/2025This week we have been training in bioinformatics with a group of 23 students enrolled at the International Master in Plant Genetics, Genomics and Breeding, organized by CIHEAM Zaragoza , read more at bioinfoperl.blogspot.com/2025/12/new-... @ebi.embl.orgbioinfoperl.blogspot.comA new edition of the bioinformatics unit at the Master's in Plant Genetics, Genomics and Breeding 020
Reposted by Bruno Contreras MoreiraBCBHubCSIC @bcbhubcsic.bsky.social · 24/11/2025📢 BCBHub Online Seminar: Bioinformatic Tools! Last session!🎙️ Speakers 👉 Bruno Contreras – GET_HOMOLOGUES -11:00h to 11:40h 👉 Ugo Bastolla - TNM, PC_ali & SSCPE- 11:50h to 12:30h 📆 Date: Dec 3 📺 Live stream: goo.su/BeUkuzn @cbm-csic-uam.bsky.social @brunocontrerasm.bsky.social 001
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 24/10/2025Mis notas de las #JBI2025: bioinfoperl.blogspot.com/2025/10/jorn...bioinfoperl.blogspot.comJornadas de Bioinformática JBI2025 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 17/10/2025Si hoy te perdiste la jornada virtual 'Pangenómica de cereales en la Web', organizada por la Red Ceres Spain, tienes el material en digital.csic.es/handle/10261... 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 17/09/2025Es una alegría ver a Valerie De Anda entre las nominadas de www.nature.com/immersive/in... @gacetaunam.bsky.social @csic.esnature.comNature Awards Inspiring Women in ScienceCelebrating and supporting the achievements of women in science, and all those who work to encourage girls and young women to engage with STEM subjects and stay in STEM careers around the world. 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 10/09/2025Reseña muy interesante, en inglés, para aprender cómo se pueden identificar genes responsables de reacciones metabólicas conocidas, pero huérfanas, usando las bases de datos genómicas: doi.org/10.1073/pnas... 000
Reposted by Bruno Contreras MoreiraJóvenes para la cooperación @cooperacion.bsky.social · 25/07/2025🏫📚 Los días 25 y 26 de septiembre de 2025 el paraninfo de la Universidad de Zaragoza acogerá la IV Edición del curso sobre la Carrera Investigadora. @unisevilla.bsky.social 111
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 19/08/2025Our footprintdb.eead.csic.es server has been updated, marking the 19082025 release: bioinfoperl.blogspot.com/2025/08/foot...footprintdb.eead.csic.esfootprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfacesfootprintDB Database 010
Reposted by Bruno Contreras MoreiraMary Williams @PlantTeaching @plantteaching.bsky.social · 30/07/2025Before this #PlantBio2025 thread closes: two exciting opportunities now open for early-career plant scientists. 1. Plantae Fellows program, apply by Aug 31 plantae.org/2026fellowsa... 2. @theplantcell.bsky.social Assistant Features Editor program, apply by Sep 15. blog.aspb.org/the-plant-ce... 03432
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 28/07/2025@biorxivpreprint.bsky.social from Rubén Sancho describes phylogenies of allopolyploids out of sequence reads and the genomes of related diploid genomes. Part of PhD work, now tested on Brachypodium, Brassica, Triticum and also yeasts: www.biorxiv.org/content/10.1... lnkd.in/dU-Eqmfybiorxiv.orgDeconvolution of Single Homeologous Polymorphism (SHP) drives phylogenetic analysis of allopolyploidsThe genomic and evolutionary study of allopolyploid organisms involves multiple copies of homeologous chromosomes, making their assembly, annotation, and phylogenetic analysis challenging. Bioinformat... 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 24/07/2025Check out a reproducible protocol for ddRAD-seq + GWAS benchmarked by Najla Ksouri doi.org/10.1186/s130... Tested on peach varieties but should work on other diploid species. Code and documentation at github.com/najlaksouri/... PS read more In Spanish at bioinfoperl.blogspot.com/2025/07/prot...doi.orgA reproducible ddRAD-seq protocol reveals novel genomic association signatures for fruit-related traits in peach - Plant MethodsImproving peach cultivars with superior traits is a primary objective of breeding initiatives. In this study, we aimed to elucidate the genetic basis of key agronomic and fruit-related traits using a ... 011
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 23/07/2025Comparto el protocolo de ddRAD-seq + GWAS de Najla Ksouri: bioinfoperl.blogspot.com/2025/07/prot...bioinfoperl.blogspot.comProtocolo reproducible de ddRAD-seq + GWAS 010
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 16/07/2025bioinfoperl.blogspot.com/2025/07/line...bioinfoperl.blogspot.comlíneas distintas entre ficheros con grep 000
Reposted by Bruno Contreras MoreiraInternational Barley Hub @intbarleyhub.bsky.social · 09/06/2025IBH Seminar Announcement‼️ 📜 Advances in Understanding Crown Root Formation in Barley 🔊 Nikola Kořínková. Czech Advanced Technology and Research Institute 📆 Thursday 12th June 14.00 BST 🔌 hutton.webex.com/weblink/regi... 033
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 03/06/2025Added BarT2 and panBaRT genes to facilitate cross-analysis at EoRNA and panBaRT at barleymap.eead.csic.es #barleymapbarleymap.eead.csic.esBarleymap 033
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 28/05/2025No había oído hablar del CD index: www.nature.com/articles/d41...nature.comAre groundbreaking science discoveries becoming harder to find?Researchers are arguing over whether ‘disruptive’ or ‘novel’ science is waning – and how to remedy the problem. 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 15/05/2025Aprende a descarga datasets del NCBI desde el terminal en bioinfoperl.blogspot.com/2025/05/desc... 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 06/05/2025Check out the latest preprint from Chesco Montardit's thesis at EEAD-CSIC www.biorxiv.org/content/10.1...biorxiv.orgVernalization regulatory network identifies potential novel functions for ZCCT genes within HvVRN2### Competing Interest Statement The authors have declared no competing interest. Agencia Estatal de Investigación, https://ror.org/003x0zc53, AGL2016-80967-R, PID2019 111621RB I00, PID2022 142116OB... 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 05/05/2025Thank you, Alfonso: An Impactful Bioinformatics Collection: academic.oup.com/bioinformati...academic.oup.comThank you, Alfonso: An Impactful Bioinformatics CollectionLast year marked 20 years of Alfonso leading Bioinformatics. We are expressing our gratitude and celebrating his remarkable contributions by highlighting some o 010
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 29/04/2025bioinfoperl.blogspot.com/2025/04/uso-...bioinfoperl.blogspot.comUso aceptable de modelos de lenguaje según la ISCB 000
Reposted by Bruno Contreras MoreiraBCBHubCSIC @bcbhubcsic.bsky.social · 19/03/2025📌Abierto el plazo de solicitudes de candidatos a las becas JAE INTRO ICU 2025 ofertadas por @bcbhubcsic.bsky.social Tienes toda la información sobre la convocatoria, planes formativos en 👉 conexion-bcb.csic.es/convocatoria... y en la sede electrónica del CSIC sede.csic.gob.es/tramites/pro.... 002
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 14/03/2025bioinfoperl.blogspot.com/2025/03/asam...bioinfoperl.blogspot.com 000
Reposted by Bruno Contreras MoreiraProtein Data Bank in Europe (PDBe) @pdbeurope.bsky.social · 12/03/2025🚀 Exciting Opportunity 🚀 Do you have a passion for structural biology? We're hiring at @PDBeurope! 🌟 Apply now to help annotate biological data 💻 🔬 🔗 embl.wd103.myworkdayjobs.com/en-US/EMBL/d... Closing date: April 6, 2025 #JobOpening #StructuralBiology #Bioinformatics #ScienceJobs #Hiring 054
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 10/03/2025Ten simple rules for a mom-friendly Academia doi.org/10.1371/jour...doi.orgTen simple rules for a mom-friendly AcademiaAuthor summary Although there is an increasing awareness of the importance of having more diverse scientific communities, the number of women in science is still low. A large proportion of the women w... 000
Reposted by Bruno Contreras MoreiraAdriana Guatame-García @adriguatame.bsky.social · 06/03/2025A friend included this anti-acknowledgement section on her PhD thesis. She also added the proposition: “Systematic bullying and undermining of girls and women in STEM starts early on and is the reason why they do not stay in science and related fields.” Absurd we still need to go through this 🧪👩🔬 12365132320
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 27/02/2025bioinfoperl.blogspot.com/2025/02/pyth...bioinfoperl.blogspot.comPython tool to plot genomic data 011
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 27/02/2025In case you haven't checked out the latest preprint from the #PanOryza consortium: www.biorxiv.org/content/10.1... @biorxivpreprint.bsky.socialbiorxiv.orgA pan-gene catalogue of Asian cultivated riceThe rice genome underpins fundamental research and breeding, but the Nipponbare (japonica) reference does not fully encompass the genetic diversity of Asian rice. To address this gap, the Rice Populat... 011
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 04/02/2025My notes of the 1st day of the Barley Genome Net European Research meeting at Dundee #BGN2025 bioinfoperl.blogspot.com/2025/02/note...bioinfoperl.blogspot.comnotes on Barley Genome Net Dundee 2025 132
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 28/01/2025anaconda.org/bioconda/get...anaconda.orgGet Pangenes | Anaconda.org 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 26/01/2025Ya os podéis apuntar a la III Jornada de Bioinformática en Aragón el viernes 14 de febrero: actividades.usj.es/2024-25/iii-...actividades.usj.esIII Jornada de Bioinformática en Aragón | Inscripción a actividades de extensión universitariaLa III Jornada de Bioinformática en Aragón reúne a toda la comunidad que trabaja aplicando o desarrollando la Bioinformática para analizar el momento actual, los principales retos, y cómo se pueden abordar desde esta disciplina. 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 22/01/2025Today at the @soilolive.bsky.social annual meeting we heard about www.horizonresultsbooster.eu , an initiative from the European Commission providing a set of services to EU-funded projects, free-of-charge, to help navigate the complexities of dissemination and exploitation, check it out!horizonresultsbooster.euBooster - BoosterReceive expert free of charge support services to boost the exploitation potential of your research results, disseminate effectively, and go to market. 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 16/01/2025Our #barleymap server at barleymap.eead.csic.es is up and runningbarleymap.eead.csic.esBarleymap 000
Bruno Contreras Moreira @brunocontrerasm.bsky.social · 16/01/2025bioinfoperl.blogspot.com/2025/01/liga...bioinfoperl.blogspot.comLiga Portuguesa de Bioinformática (LBP) 000