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Bruno Contreras Moreira

@brunocontrerasm.bsky.social
56 followers 96 following 42 posts

Biología computacional y genómica de plantas eead-csic-compbio.github.io linkedin.com/in/brunocontrerasm @BrunoContrerasM

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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 11/09/2026
bioinfoperl.blogspot.com/2026/09/rsat...
bioinfoperl.blogspot.com
RSAT Plants requires registration for now
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 28/08/2026
The RSAT plants server at plants.rsat.eu and rsat.eead.csic.es/plants will be off for a few days due to security updates, sorry for the inconvenience
plants.rsat.eu
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 11/08/2026
Barleymap (barleymap.eead.csic.es/barleymap), a Web tool for mapping the position of genetic markers along maps of the barley genome, has been updated and now it supports graph searches over the Pan20 barley pangenome: bioinfoperl.blogspot.com/2026/08/barl...
barleymap.eead.csic.es
Barleymap
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 31/07/2026
Pruebo minibwa: bioinfoperl.blogspot.com/2026/07/prue...
bioinfoperl.blogspot.com
Pruebo minibwa
Ideas y código para problemas de genómica de plantas, biología computacional y estructural
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 09/06/2026
bioinfoperl.blogspot.com/2026/06/comp...
bioinfoperl.blogspot.com
Comprime y consulta ficheros FASTA con agc
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 27/04/2026
bioinfoperl.blogspot.com/2026/04/nota...
bioinfoperl.blogspot.com
Notas de la 3ª asamblea general de la conexiónBCB del CSIC
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Reposted by Bruno Contreras Moreira
New Phytologist @newphyt.bsky.social · 14/04/2026
New insights uncover broader functions of HvVRN2 in barley flowering and adaptation Montardit-Tarda et al. @fmontardittarda.bsky.social @philippaborrill.bsky.social nph.onlinelibrary.wiley.com/doi/10.1111/...
Scheme of the experimental design.
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 31/03/2026
bioinfoperl.blogspot.com/2026/03/obte...
bioinfoperl.blogspot.com
Obtén taxonomías del NCBI desde el terminal
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 04/03/2026
bioinfoperl.blogspot.com/2026/03/foot...
bioinfoperl.blogspot.com
footprintDB March 2026 version
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 18/02/2026
bioinfoperl.blogspot.com/2026/02/iv-j...
bioinfoperl.blogspot.com
IV Jornada de Bioinformática en Aragón
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 19/01/2026
bioinfoperl.blogspot.com/2026/01/adio...
bioinfoperl.blogspot.com
adiós a Peer Bork
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 08/01/2026
bioinfoperl.blogspot.com/2026/01/blas...
bioinfoperl.blogspot.com
NCBI Blast 2.17.0+ es más rápido y acepta FASTAs comprimidos
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 07/01/2026
bioinfoperl.blogspot.com/2026/01/pare...
bioinfoperl.blogspot.com
Parecidos ocultos entre proteínas revelados por inmersión
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 19/12/2025
This week we have been training in bioinformatics with a group of 23 students enrolled at the International Master in Plant Genetics, Genomics and Breeding, organized by CIHEAM Zaragoza , read more at bioinfoperl.blogspot.com/2025/12/new-... @ebi.embl.org
bioinfoperl.blogspot.com
A new edition of the bioinformatics unit at the Master's in Plant Genetics, Genomics and Breeding
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Reposted by Bruno Contreras Moreira
BCBHubCSIC @bcbhubcsic.bsky.social · 24/11/2025
📢 BCBHub Online Seminar: Bioinformatic Tools! Last session!🎙️ Speakers 👉 Bruno Contreras – GET_HOMOLOGUES -11:00h to 11:40h 👉 Ugo Bastolla - TNM, PC_ali & SSCPE- 11:50h to 12:30h 📆 Date: Dec 3 📺 Live stream: goo.su/BeUkuzn ‪@cbm-csic-uam.bsky.social‬ @brunocontrerasm.bsky.social‬‬‬‬‬‬‬ ‪‬‬‬‬‬‬‬
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 24/10/2025
Mis notas de las #JBI2025: bioinfoperl.blogspot.com/2025/10/jorn...
bioinfoperl.blogspot.com
Jornadas de Bioinformática JBI2025
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 17/10/2025
Si hoy te perdiste la jornada virtual 'Pangenómica de cereales en la Web', organizada por la Red Ceres Spain, tienes el material en digital.csic.es/handle/10261...
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 17/09/2025
Es una alegría ver a Valerie De Anda entre las nominadas de www.nature.com/immersive/in... @gacetaunam.bsky.social @csic.es
nature.com
Nature Awards Inspiring Women in Science
Celebrating and supporting the achievements of women in science, and all those who work to encourage girls and young women to engage with STEM subjects and stay in STEM careers around the world.
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 10/09/2025
Reseña muy interesante, en inglés, para aprender cómo se pueden identificar genes responsables de reacciones metabólicas conocidas, pero huérfanas, usando las bases de datos genómicas: doi.org/10.1073/pnas...
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Reposted by Bruno Contreras Moreira
Jóvenes para la cooperación @cooperacion.bsky.social · 25/07/2025
🏫📚 Los días 25 y 26 de septiembre de 2025 el paraninfo de la Universidad de Zaragoza acogerá la IV Edición del curso sobre la Carrera Investigadora. @unisevilla.bsky.social
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 19/08/2025
Our footprintdb.eead.csic.es server has been updated, marking the 19082025 release: bioinfoperl.blogspot.com/2025/08/foot...
footprintdb.eead.csic.es
footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces
footprintDB Database
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Reposted by Bruno Contreras Moreira
Mary Williams @PlantTeaching @plantteaching.bsky.social · 30/07/2025
Before this #PlantBio2025 thread closes: two exciting opportunities now open for early-career plant scientists. 1. Plantae Fellows program, apply by Aug 31 plantae.org/2026fellowsa... 2. @theplantcell.bsky.social Assistant Features Editor program, apply by Sep 15. blog.aspb.org/the-plant-ce...
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 28/07/2025
@biorxivpreprint.bsky.social from Rubén Sancho describes phylogenies of allopolyploids out of sequence reads and the genomes of related diploid genomes. Part of PhD work, now tested on Brachypodium, Brassica, Triticum and also yeasts: www.biorxiv.org/content/10.1... lnkd.in/dU-Eqmfy
biorxiv.org
Deconvolution of Single Homeologous Polymorphism (SHP) drives phylogenetic analysis of allopolyploids
The genomic and evolutionary study of allopolyploid organisms involves multiple copies of homeologous chromosomes, making their assembly, annotation, and phylogenetic analysis challenging. Bioinformat...
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 24/07/2025
Check out a reproducible protocol for ddRAD-seq + GWAS benchmarked by Najla Ksouri doi.org/10.1186/s130... Tested on peach varieties but should work on other diploid species. Code and documentation at github.com/najlaksouri/... PS read more In Spanish at bioinfoperl.blogspot.com/2025/07/prot...
doi.org
A reproducible ddRAD-seq protocol reveals novel genomic association signatures for fruit-related traits in peach - Plant Methods
Improving peach cultivars with superior traits is a primary objective of breeding initiatives. In this study, we aimed to elucidate the genetic basis of key agronomic and fruit-related traits using a ...
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 23/07/2025
Comparto el protocolo de ddRAD-seq + GWAS de Najla Ksouri: bioinfoperl.blogspot.com/2025/07/prot...
bioinfoperl.blogspot.com
Protocolo reproducible de ddRAD-seq + GWAS
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 16/07/2025
bioinfoperl.blogspot.com/2025/07/line...
bioinfoperl.blogspot.com
líneas distintas entre ficheros con grep
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Reposted by Bruno Contreras Moreira
International Barley Hub @intbarleyhub.bsky.social · 09/06/2025
IBH Seminar Announcement‼️ 📜 Advances in Understanding Crown Root Formation in Barley 🔊 Nikola Kořínková. Czech Advanced Technology and Research Institute 📆 Thursday 12th June 14.00 BST 🔌 hutton.webex.com/weblink/regi...
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 03/06/2025
Added BarT2 and panBaRT genes to facilitate cross-analysis at EoRNA and panBaRT at barleymap.eead.csic.es #barleymap
barleymap.eead.csic.es
Barleymap
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 28/05/2025
No había oído hablar del CD index: www.nature.com/articles/d41...
nature.com
Are groundbreaking science discoveries becoming harder to find?
Researchers are arguing over whether ‘disruptive’ or ‘novel’ science is waning – and how to remedy the problem.
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 15/05/2025
Aprende a descarga datasets del NCBI desde el terminal en bioinfoperl.blogspot.com/2025/05/desc...
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 06/05/2025
Check out the latest preprint from Chesco Montardit's thesis at EEAD-CSIC www.biorxiv.org/content/10.1...
biorxiv.org
Vernalization regulatory network identifies potential novel functions for ZCCT genes within HvVRN2
### Competing Interest Statement The authors have declared no competing interest. Agencia Estatal de Investigación, https://ror.org/003x0zc53, AGL2016-80967-R, PID2019 111621RB I00, PID2022 142116OB...
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 05/05/2025
Thank you, Alfonso: An Impactful Bioinformatics Collection: academic.oup.com/bioinformati...
academic.oup.com
Thank you, Alfonso: An Impactful Bioinformatics Collection
Last year marked 20 years of Alfonso leading Bioinformatics. We are expressing our gratitude and celebrating his remarkable contributions by highlighting some o
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 29/04/2025
bioinfoperl.blogspot.com/2025/04/uso-...
bioinfoperl.blogspot.com
Uso aceptable de modelos de lenguaje según la ISCB
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Reposted by Bruno Contreras Moreira
BCBHubCSIC @bcbhubcsic.bsky.social · 19/03/2025
📌Abierto el plazo de solicitudes de candidatos a las becas JAE INTRO ICU 2025 ofertadas por @bcbhubcsic.bsky.social Tienes toda la información sobre la convocatoria, planes formativos en 👉 conexion-bcb.csic.es/convocatoria... y en la sede electrónica del CSIC sede.csic.gob.es/tramites/pro....
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 14/03/2025
bioinfoperl.blogspot.com/2025/03/asam...
bioinfoperl.blogspot.com
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Reposted by Bruno Contreras Moreira
Protein Data Bank in Europe (PDBe) @pdbeurope.bsky.social · 12/03/2025
🚀 Exciting Opportunity 🚀 Do you have a passion for structural biology? We're hiring at @PDBeurope! 🌟 Apply now to help annotate biological data 💻 🔬 🔗 embl.wd103.myworkdayjobs.com/en-US/EMBL/d... Closing date: April 6, 2025 #JobOpening #StructuralBiology #Bioinformatics #ScienceJobs #Hiring
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 10/03/2025
Ten simple rules for a mom-friendly Academia doi.org/10.1371/jour...
doi.org
Ten simple rules for a mom-friendly Academia
Author summary Although there is an increasing awareness of the importance of having more diverse scientific communities, the number of women in science is still low. A large proportion of the women w...
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Reposted by Bruno Contreras Moreira
Adriana Guatame-García @adriguatame.bsky.social · 06/03/2025
A friend included this anti-acknowledgement section on her PhD thesis. She also added the proposition: “Systematic bullying and undermining of girls and women in STEM starts early on and is the reason why they do not stay in science and related fields.” Absurd we still need to go through this 🧪👩‍🔬
There have been people less than helpful in my journey here. I wanted to acknowledge those too, bc I know I am not unique in this experience.
No thank you to the physics study assoc that made me sing songs about how women couldn't study physics without sleeping with the professor, the day I stepped into university life. No thank you to the 5th year physics student that decided to assign me a stripper name within the first minute of meeting me in the physics coffee corner in my first year. No thank you to the technician that was responsible for onboarding me on the use of the cluster in my third year who raised his eyebrows and asked me if that meant I was some sort of computer girl. No thank you to the senior researcher that sent me utterly inappropriate texts after a conference, then proceeded to apologise months later by telling me they had not been meant for me anyway so no hard feelings remain hopefully And no thank you to him for attending every conference I've been to since. No thank you to the people who told me that it was surprising that I was doing a PhD since I was a girl. No thank you to the man who mistook me for a coffee lady at a conference, and after having to correct him two times that I did not work there, responded with you should consider it. No thank you to the researcher that asked me what I was wearing underneath my outfit during a conference. No thank you to the physicist who declared to a room full of other physicists that biologists don't know how to design an experiment. No thank you to the people who have called me scary instead of strong and intimidating instead of intelligent.
And finally, no thank you to the exec board of the TU Delft, whose knee-jerk reaction to being held up a mirror about the social safety at the university, was to sue the party holding up the mirror instead of looking at the problems they highlighted.
... You have made me feel like I do not belong in science & I cannot forgive you for that.
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 27/02/2025
bioinfoperl.blogspot.com/2025/02/pyth...
bioinfoperl.blogspot.com
Python tool to plot genomic data
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 27/02/2025
In case you haven't checked out the latest preprint from the #PanOryza consortium: www.biorxiv.org/content/10.1... @biorxivpreprint.bsky.social
biorxiv.org
A pan-gene catalogue of Asian cultivated rice
The rice genome underpins fundamental research and breeding, but the Nipponbare (japonica) reference does not fully encompass the genetic diversity of Asian rice. To address this gap, the Rice Populat...
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 04/02/2025
My notes of the 1st day of the Barley Genome Net European Research meeting at Dundee #BGN2025 bioinfoperl.blogspot.com/2025/02/note...
bioinfoperl.blogspot.com
notes on Barley Genome Net Dundee 2025
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 28/01/2025
anaconda.org/bioconda/get...
anaconda.org
Get Pangenes | Anaconda.org
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 26/01/2025
Ya os podéis apuntar a la III Jornada de Bioinformática en Aragón el viernes 14 de febrero: actividades.usj.es/2024-25/iii-...
actividades.usj.es
III Jornada de Bioinformática en Aragón | Inscripción a actividades de extensión universitaria
La III Jornada de Bioinformática en Aragón reúne a toda la comunidad que trabaja aplicando o desarrollando la Bioinformática para analizar el momento actual, los principales retos, y cómo se pueden abordar desde esta disciplina.
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 22/01/2025
Today at the @soilolive.bsky.social annual meeting we heard about www.horizonresultsbooster.eu , an initiative from the European Commission providing a set of services to EU-funded projects, free-of-charge, to help navigate the complexities of dissemination and exploitation, check it out!
horizonresultsbooster.eu
Booster - Booster
Receive expert free of charge support services to boost the exploitation potential of your research results, disseminate effectively, and go to market.
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 16/01/2025
Our #barleymap server at barleymap.eead.csic.es is up and running
barleymap.eead.csic.es
Barleymap
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Bruno Contreras Moreira @brunocontrerasm.bsky.social · 16/01/2025
bioinfoperl.blogspot.com/2025/01/liga...
bioinfoperl.blogspot.com
Liga Portuguesa de Bioinformática (LBP)
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