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Pierre Hohmann

@bonaplanta.eu
149 followers 317 following 27 posts

Everything microbiome related to crop stress resistance, plant breeding, agroecology... and, of course, climate change ;) Founder of BonaPlanta.

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Pierre Hohmann @bonaplanta.eu · 21/07/2026
Why can #AMF products disappoint? Often, three filters are confused: product viability, field responsiveness and crop genotype. The lesson is not that #microbials work or don’t - but that outcomes depend on quality control, diagnostics and genetic matching.
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Pierre Hohmann @bonaplanta.eu · 16/07/2026
1/2 How can #CropWildRelatives help build more resilient and sustainable food systems? The new video of our #COUSINproject, coordinated by @schob.bsky.social shows 2.5 years of progress across Europe - conserving and using wild diversity to develop crops better adapted to climate change.
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Ákos T Kovács @evolvedbiofilm.bsky.social · 15/07/2026
How do bacteria recognize fungal competitors? @cp-trendsmicrobiol.bsky.social by Lingfang Zhu (朱玲芳), Changfu Li (李长富), Xihui Shen (沈锡辉) www.cell.com/trends/micro...
cell.com
How do bacteria recognize fungal competitors?
Bacterial–fungal interactions (BFIs) are central to microbial community dynamics in diverse ecosystems, with profound implications for medicine, agriculture, and environmental microbiology. A critical...
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Pierre Hohmann @bonaplanta.eu · 14/07/2026
After the “usual suspects” in pea root rot (shorturl.at/GRFYX), what appears when we scan the whole #RootMicrobiome? Pea genotype strongly shaped fungi and bacteria, revealing candidate disease and health biomarkers. Paper: @valentingfeller.bsky.social et al. 2025, Envir Microbiome
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Pierre Hohmann @bonaplanta.eu · 09/07/2026
More mycorrhizae are not automatically better. For #PlantBreeding and #farming, the question might bot be about root colonisation, but whether AMF deliver a useful cost-benefit ratio. @mrillig.bsky.social @tobykiers.bsky.social Abundance is not efficiency. #AMF #Agroecology
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Pierre Hohmann @bonaplanta.eu · 09/07/2026
Why do some #Trichoderma products work - while others disappoint? A useful strain is not enough. It must establish in roots, persist, and function there. That ecological proof is still often missing in #biologicals development - and exactly where BonaPlanta comes in.
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epsoeurope.bsky.social @epsoeurope.bsky.social · 06/07/2026
🌱 New @cousinproject.bsky.social project video! From Wild Diversity to Resilient Agriculture highlights 2.5 years of progress using crop wild relatives to develop more resilient, sustainable crops for Europe. 🎬 Watch on YouTube: youtu.be/qxMsHNBcNNY
youtu.be
Video 1_COUSIN project: 2.5 Years of Progress and Impact
YouTube video by European Plant Science Organisation
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Pierre Hohmann @bonaplanta.eu · 07/07/2026
El Máster en Agroecología y Agricultura Ecológica de la UB abre su edición 2026-2027. 📅 Sesión informativa online: 15 de julio, 19h: www.ub.edu/masterae/con... Yo daré una clase sobre la gestión de las micorrizas y otras simbiosis fúngicas en agricultura.
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Pierre Hohmann @bonaplanta.eu · 07/07/2026
Here's our first concrete example on how microbial markers can be used in resistance #PlantBreeding. Main idea: many diseases are not single-pathogen problems, and breeding/diagnostics may benefit from looking at microbial key taxa (incl. beneficials), not only visual disease scores. #Microbiome
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Pierre Hohmann @bonaplanta.eu · 05/07/2026
Is plant disease resistance just a plant trait? Or a #holobiont phenotype? The rhizosphere microbiome shouldn't be treated as background noise. It is a key driver of plant performance. Heritable microbial signatures could bridge the genome-to-phenome gap in crop breeding.
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Pierre Hohmann @bonaplanta.eu · 19/12/2025
This week’s AI in Agriculture 🌱 📊 A recent ML study shows soil microbiome data alone poorly predict yield and disease. 💡 Signal appears mainly when combined with soil & environmental variables. ✅ Microbiomes amplify context, not replace it. 🔗 link.springer.com/article/10.1...
link.springer.com
Human limits in machine learning: prediction of potato yield and disease using soil microbiome data - BMC Bioinformatics
Background The preservation of soil health is a critical challenge in the 21st century due to its significant impact on agriculture, human health, and biodiversity. We provide one of the first compreh...
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Pierre Hohmann @bonaplanta.eu · 20/11/2025
Please share one last time! 📢 We’re hiring a #PostDoc @ub.edu! ❗Deadline's coming up: Nov 24 Join us to model soil health using ML of microbiome data. Join a creative team working towards sustainable ag & spin-off innovation 🚀 📅: Jan 2026 📍: Barcelona, Spain 🔗: euraxess.ec.europa.eu/jobs/383350
euraxess.ec.europa.eu
Postdoc position in machine learning models for soil health prediction
The Agrobiology and Soil Management Group (University of Barcelona) invites applications for a 12-month postdoctoral position (part-time, 0.5 FTE) focused on developing and validating machine learning...
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Pierre Hohmann @bonaplanta.eu · 07/11/2025
This week's special hot take! 💡 Microbes from dry-history soils boosted grass drought tolerance proving that soil microbiomes hold “climate memory”. ✅ Managing these legacies could aid crop resilience. 🔗 www.nature.com/articles/s41...
nature.com
Precipitation legacy effects on soil microbiota facilitate adaptive drought responses in plants - Nature Microbiology
Metagenomes from prairie soils in Kansas, USA, show how historical exposure to water stress impacts soil microorganisms and subsequently drought responses in plants.
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INSA-UB @insa-ub.bsky.social · 31/10/2025
🔹 Culinary training and research in collective catering (1:15 p.m.) With Dr. Marina Pérez Llorca, who will discuss how education and research drive innovation in this field. ℹ️ tuit.cat/Veuwz
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SoilMicroBio @soilmicrobio.bsky.social · 23/10/2025
A big day for European Soils www.europarl.europa.eu/news/en/pres... #SoilHealth
europarl.europa.eu
Soil monitoring: Parliament adopts new EU law with better support for farmers | News | European Parliament
The new law will ensure soil is monitored in all EU countries and farmers get better support to improve soil health and soil resilience.
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Pierre Hohmann @bonaplanta.eu · 02/11/2025
Check out the latest EU CAP Network #EIPAGRI newsletter featuring an interview I had with Daniel Suter, Head of Forage Crop Variety Testing @agroscope.bsky.social: sh1.sendinblue.com/15d9jpnd39tx... We elaborate how variety testing can boost species mixtures in #plantbreeding and farming.
sh1.sendinblue.com
Innovation & knowledge exchange | EIP-AGRI Newsletter
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Luzia Stalder @luzia-stalder.bsky.social · 30/10/2025
Still using 16S/ITS profiling? You might want to reconsider👀 Our new paper presents pangenome-informed amplicons that provide up to 10× higher phylogenetic resolution than full-length ribosomal markers- while remaining cost effective and scalable! microbiomejournal.biomedcentral.com/articles/10....
microbiomejournal.biomedcentral.com
High-resolution profiling of bacterial and fungal communities using pangenome-informed taxon-specific long-read amplicons - Microbiome
Background High-throughput sequencing technologies have greatly advanced our understanding of microbiomes, but resolving microbial communities at species and strain levels remains challenging. Results...
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Pierre Hohmann @bonaplanta.eu · 28/10/2025
📢 We’re hiring! Pls help spread the word. Postdoc (50%, 12 months) @ub.edu in Barcelona to model soil health using ML of microbiome data. Join a creative team working towards sustainable ag & spin-off innovation 🚀 Start: Jan 2026 🔗 euraxess.ec.europa.eu/jobs/383350 #PostDoc #JobsInAcademia
euraxess.ec.europa.eu
Postdoc position in machine learning models for soil health prediction
The Agrobiology and Soil Management Group (University of Barcelona) invites applications for a 12-month postdoctoral position (part-time, 0.5 FTE) focused on developing and validating machine learning...
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Pierre Hohmann @bonaplanta.eu · 23/10/2025
This week’s “AI in Agriculture” 🌱 📊 ML framework tackled microbiome data limits (dimensionality, compositionality, sparsity). ⚙️ Prospect: inside-out (hologenome breeding) + outside-in (SynCom design) + federated learning. 🔗 www.sciencedirect.com/science/arti... #AIinAg
sciencedirect.com
Harnessing artificial intelligence to decode the rhizosphere microbiome
The rhizosphere microbiome plays crucial roles in plant health by regulating nutrient cycling and enhancing stress resilience. However, due to its com…
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Pierre Hohmann @bonaplanta.eu · 16/10/2025
This week’s “AI in Agriculture” 🌱 📊 ML corrected NDVI for abiotic factors, then linked residuals to fungal microbiomes. ✅ Promising route to soil-microbiome early-warning systems. 🔗 doi.org/10.1038/s432... #AIinAg #Microbiome #SoilHealth
doi.org
Exploring crop health and its associations with fungal soil microbiome composition using machine learning applied to remote sensing data - Communications Earth & Environment
Crop health is improved by abundance of beneficial soil fungal genera and reduced by abundance of soil fungal pathogens, according to analysis of satellite-derived normalized difference vegetation ind...
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Pierre Hohmann @bonaplanta.eu · 09/10/2025
This week’s “AI in Agriculture” 🌱 📊 Universal ODE hybrid model predicted SOC change with R² ≈ 0.9999 in low-noise tests, with moisture, temperature & microbial turnover as key drivers. ⚠️ Sensitive to noisy data → needs uncertainty-aware training. 🔗 arxiv.org/abs/2509.24306 #AIinAg #SoilCarbon
arxiv.org
A study of Universal ODE approaches to predicting soil organic carbon
Soil Organic Carbon (SOC) is a foundation of soil health and global climate resilience, yet its prediction remains difficult because of intricate physical, chemical, and biological processes. In this ...
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Teppo Hiltunen @teppo-h.bsky.social · 04/10/2025
Open position: Professor or Assistant / Associate (tenure track) Professor in Plant Ecology (U. Turku Finland) Please share ats.talentadore.com/apply/kasvie...
ats.talentadore.com
Professor or Assistant / Associate (tenure track) Professor in Plant Ecology
The Faculty of Science is looking for a full professor or assistant/associate professor (tenure track) in Plant Ecology. The aim of the professorship is to strengthen scientific research and education...
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Pierre Hohmann @bonaplanta.eu · 02/10/2025
This week’s “AI in Agriculture” 🌱 📊 AgroLLM benchmarked LLMs with RAG on agri corpora → ChatGPT-4o Mini reached 93% accuracy, better than Gemini & Mistral ✅ Specialised LLMs may be a future of ag knowledge transfer 🔗 arxiv.org/abs/2503.04788 #AIinAg #LLM #RAG
arxiv.org
AgroLLM: Connecting Farmers and Agricultural Practices through Large Language Models for Enhanced Knowledge Transfer and Practical Application
AgroLLM is an AI-powered chatbot designed to enhance knowledge-sharing and education in agriculture using Large Language Models (LLMs) and a Retrieval-Augmented Generation (RAG) framework. By using a ...
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Pierre Hohmann @bonaplanta.eu · 26/09/2025
📢 PhD opening in Barcelona! Join our group. Research soil health and carbon cycling. Recent grad (2021-25) w/ > 8.5 grade & R/Python skills. Details: www.linkedin.com/posts/agrobi... #PhDJobs #AcademicJobs #PhDPosition
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Pierre Hohmann @bonaplanta.eu · 25/09/2025
This week's "AI in Agriculture" 🌱 📊 Soil microbiome profiles analysed with random forest models predicted whether soils suppress Rhizoctonia solani ✅ Promising step towards microbiome-informed tools for soil health and biocontrol www.sciencedirect.com/science/arti... #AIinAg #Microbiome
sciencedirect.com
Microbiome-driven machine learning for predicting suppressiveness to Rhizoctonia solani in organic-amended soils
This study introduces a microbiome-integrated machine learning framework to predict soil suppressiveness against Rhizoctonia solani, a destructive fun…
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Pierre Hohmann @bonaplanta.eu · 17/09/2025
This week's "AI/ML in Agriculture" hot take: www.nature.com/articles/s41... 💡CWRs host microbes modern crops lost → relevant for resilience traits. ML helps model which pairings matter most. ✅ Fits with our @cousinproject.bsky.social, where we aim for microbiome-mediated trait transfers
nature.com
Blueprints for sustainable plant production through the utilization of crop wild relatives and their microbiomes - Nature Communications
Authors discuss the potential of conserving crop wild relatives, together with the associated communities of microorganisms, to unlock strategies for improving crop resilience and achieving food secur...
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Polyphenol Research Group @polyphenolr.bsky.social · 12/09/2025
📢Oportunidad predoctoral en Barcelona: Investigación sobre efectos de la tinta de tatuajes durante su proceso de eliminación✒ 🎓Perfil: Graduado en Nutrición, Enfermería, Biología, Química, Farmacia o Medicina ✅Graduado entre 2021-25 ✅Nota media > 8.5 ✅Conocimientos Estadística (Stata/R)
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Prof Braj Singh @prof-braj-singh.bsky.social · 12/09/2025
Glad to be part of this team calling on global scientific and conservation communities to get on board to protect microbial life, which sustains all forms of life on our planet. in @natmicrobiol.nature.com www.nature.com/articles/s41...
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Giannis Stringlis @gstringlis.bsky.social · 11/09/2025
🔬🌱Our review “Roots: metabolic architects of beneficial microbiome assembly” led by PhD candidate Melissa Uribe Acosta @plantphys.bsky.social discusses plant mechanisms of root microbiome selection. Co-authors: @cornepieterse.bsky.social Jiayu Zhou Alberto Pascale. academic.oup.com/plphys/artic...
academic.oup.com
Roots: metabolic architects of beneficial microbiome assembly
Abstract. The increasing demand for sustainable agricultural practices has driven a renewed interest in plant–microbiome interactions as a basis for the ne
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Pierre Hohmann @bonaplanta.eu · 10/09/2025
AI/ML in Agriculture - This week’s hot take 🌱 📊 Satellite crop health signals linked to soil fungal microbiomes 💡 Associations appear after adjusting for weather and soil ⚠️ For now: associations not causation ✅ Satellites guide, fungi explain! 🔗 www.nature.com/articles/s43... #AIinAg #Microbiome
nature.com
Exploring crop health and its associations with fungal soil microbiome composition using machine learning applied to remote sensing data - Communications Earth & Environment
Crop health is improved by abundance of beneficial soil fungal genera and reduced by abundance of soil fungal pathogens, according to analysis of satellite-derived normalized difference vegetation ind...
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🧬Jacob L Steenwyk @jlsteenwyk.bsky.social · 09/09/2025
There's a lot happening in AI, and we made a way to keep up. @genomelybio.bsky.social will now post weekly reports about AI (& beyond). Eg, we examined & summarized 166 articles, 56 community posts (eg, from Reddit), and 10 trending topics (eg, from Bluesky) genomely.substack.com/p/ai-weekly-...
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Pierre Hohmann @bonaplanta.eu · 08/09/2025
How can mixing ability be integrated into variety testing? An interview with Dr. Daniel Suter, Head of Forage Crop Variety Testing @agroscope.bsky.social offers lessons for other countries and cropping systems. Published now open-access at: zenodo.org/records/1707...
zenodo.org
Breeding for species mixtures: 50 Years, One Key Metric - Exporting Switzerland's Competitive-Ability Approach from Pasture to Arable Systems?
Crop associations (CAs), the cultivation of multiple crop species together as intercrops, offer significant benefits for sustainable agriculture. However, a major bottleneck for broader adoption is the lack of CA-oriented cultivar testing and breeding.For more than fifty years in Switzerland, varieties have undergone testing not only in pure but also in mixed stands, and thus provided a rare example of integrating CAs in an official variety testing scheme. The primary objective is to gain insights into the competitive strength of the tested varieties. This information holds particular significance in the formulation of clover-grass mixtures, as over 90% of cultivated fields in Switzerland, dedicated to meadows and pastures, have traditionally been sown with clover-grass mixtures. This longstanding practice reflects the agricultural importance attached to understanding the interplay between different varieties in mixed cropping systems. As part of a mini paper on “Cultivar testing as a key to boost uptake of crop associations in breeding and farming” (see related EU CAP Focus Group output at https://eu-cap-network.ec.europa.eu/focus-group-crop-associations-including-milpa-and-protein-crops_en), an interview with Dr. Daniel Suter, Head of Variety Testing for Forage Crops in Switzerland, delved into the intricacies of forage crop variety testing and its implications for agricultural practices and breeding strategies. The purpose of this interview is to provide valuable information that might help to transfer this successful application of CA cultivar testing to forage crop testing schemes in other countries and possibly extrapolate insights to other cultivation systems such as arable farming.
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Marc Somssich @somssich.bsky.social · 08/09/2025
The discovery of genes underlying interesting traits for #PlantBreeding is one of the most important & difficult tasks here @kwsgroup.bsky.social. We are looking for a Quantitative Geneticist to help us with this! #PlantScience #PlantBreeding #PlantGenetics #PlantScienceJobs #PlantSciJobs
jobs.kws.com
Scientist (m/f/d) in Quantitative Genetics for Trait Discovery
Scientist (m/f/d) in Quantitative Genetics for Trait Discovery
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Research Centre For Ecological Change @rececochange.bsky.social · 03/09/2025
📢 Post doc! Want to join our team? We are looking for 3 post docs in biodiversity science, genetic indicator assessment, and ecological statistics for a fixed term of 2 years! Come unravel the drivers and consequences of global change on biodiversity with us! DL 24.9. #universityofhelsinki
jobs.helsinki.fi
3 Post doc positions in biodiversity science, genetic indicator assessment and ecological statistics
3 Post doc positions in biodiversity science, genetic indicator assessment and ecological statistics
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Pierre Hohmann @bonaplanta.eu · 04/09/2025
Failure & misfortune… and one more Horizon. Past year summary: 5 big proposals. All rejected. I know the odds are low. But it still feels brutal. So much effort, then nothing. Today, I hit submit on yet another Horizon. On my birthday. Feels symbolic. Another step forward… or not. 😬
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Pierre Hohmann @bonaplanta.eu · 03/09/2025
OpenAI just launched “OpenAI for Science” 👉 threadreaderapp.com/thread/19629... Cool idea: AI as a real scientific instrument. But… hallucinations are still a thing. Makes me wonder what this means once ag data and models get fed in. 🤔 Might have big implications for farmer decision support tools. 🚜
threadreaderapp.com
Thread by @kevinweil on Thread Reader App
@kevinweil: 💥 I’m starting something new inside OpenAI! It’s called OpenAI for Science, and the goal is to build the next great scientific instrument: an AI-powered platform that accelerates scientifi...
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Pierre Hohmann @bonaplanta.eu · 29/08/2025
This study is the result of many years of unwavering dedication of several key people around Michael Schneider and @monikamessmer.bsky.social. It marks an important step toward making #microbiome based resistance #breeding a reality. bmcplantbiol.biomedcentral.com/articles/10....
bmcplantbiol.biomedcentral.com
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