Reposted by A. Berçin BarlasTurgut Mesut Yılmaz @turgutmesut.bsky.social · 27/09/2026📢 Very happy to see ARTS-DB 2.0 out in Database! 🧬 A lot of work went into bringing bacterial and fungal target-directed genome mining together with updated BGC predictions and an improved interface. Great to finally share it with the community! 🚀 📄: doi.org/10.1093/data... #TDGM #NPs #SecMet 042
A. Berçin Barlas @aysebercinb.bsky.social · 17/07/2026🎉 Finally out!! Our paper, "DynaPIN: A tool for characterizing dynamic protein interfaces" is accepted in JMB! @ezgikaraca.bsky.social (in collaboration with @sacquin-mo.eurosky.social & co.) DynaPIN is an open-source pipeline for analyzing dynamic protein interfaces. 🧵👇 📄 doi.org/10.1016/j.jm... 1115
Reposted by A. Berçin BarlasBioExcel CoE @bioexcelcoe.bsky.social · 27/04/2026Our rescheduled webinar "DynaPIN: a tool for characterising dynamic protein interfaces" is happening tomorrow! 🗓️ 28 April 2026, 15:00 CET ✍️ bioexcel.eu/lgmq @ezgikaraca.bsky.social #webinar #ComputerSimulation #protein #molecularmodelingbioexcel.euWebinar: DynaPIN: A Tool for Characterizing Dynamic Protein Interfaces (2026-04-28)Date: 28 April 2026 Time: 15:00 CET Registration Abstract Static structural models often fail to capture the dynamic mechanisms of protein interactions. To address this, we introduce DynaPIN, an open... 095
Reposted by A. Berçin BarlasEzgi Karaca @ezgikaraca.bsky.social · 27/03/2026Only a couple of days left to introduce our brand new tool, DynaPIN that @aysebercinb.bsky.social developed (in collaboration with @sacquin-mo.bsky.social & co.) to analyze dynamic/ensemble protein interfaces! 084
Reposted by A. Berçin BarlasBüşra Savaş @busrasavas.bsky.social · 09/02/2026🚀 Excited to announce that our perspective piece with @ezgikaraca.bsky.social and @aysebercinb.bsky.social on AlphaFold distograms is now published in @febsletters.bsky.social!! Here is what we did further 👇 143
Reposted by A. Berçin BarlasBüşra Savaş @busrasavas.bsky.social · 11/12/2025364 days a year we use AlphaFold to predict protein structure… But not on Christmas Eve! That’s when Santa does the predictions. But beware, computational structural biologists on the naughty list will only get low pLDDTs #SantaFold #bananapro 092
Reposted by A. Berçin BarlasEzgi Karaca @ezgikaraca.bsky.social · 06/10/2025And the legacy continues! 😊 @amjjbonvin.bsky.social @bioinfo.se @lindorfflarsen.bsky.social #EMBOIntegMod25 ! 🍀🧿 12611
A. Berçin Barlas @aysebercinb.bsky.social · 22/08/2025🚀 Excited to share that our article with @ezgikaraca.bsky.social is now published in Communications Biology! In this study, we explored DNA readout rules of almost identical DNMT3A and DNMT3B (91% sequence similarity!), and we asked: how can nearly the same proteins “see” DNA so differently? 🧬✨ 173
