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Turgut Mesut Yılmaz

@turgutmesut.bsky.social
128 followers 66 following 1 posts

Bioengineer & Entrepreneur | PhD Student at University of Tübingen | Natural Products, Bioinformatics, @ZiemertLab

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Turgut Mesut Yılmaz @turgutmesut.bsky.social · 27/09/2026
📢 Very happy to see ARTS-DB 2.0 out in Database! 🧬 A lot of work went into bringing bacterial and fungal target-directed genome mining together with updated BGC predictions and an improved interface. Great to finally share it with the community! 🚀 📄: doi.org/10.1093/data... #TDGM #NPs #SecMet
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BF Francis Ouellette @bffo.bsky.social · 26/09/2026
From @turgutmesut.bsky.social Semih Erdogmus @canerbagci.bsky.social @nadineziemert.bsky.social in #OUP 's #DATABASE journal | ARTS-DB 2.0: an expanded database for target-directed genome mining across #Bacteria and #Fungi | #Bioinformatics #OpenScience | 🧬🖥️🧪🔓🇩🇪 ⬇️ academic.oup.com/database/art...
academic.oup.com
ARTS-DB 2.0: an expanded database for target-directed genome mining across bacteria and fungi
Abstract. The increasing prevalence of antimicrobial resistance requires efficient strategies to prioritize biosynthetic gene clusters (BGCs) that may enco
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Nadine Ziemert @nadineziemert.bsky.social · 23/10/2025
🧬 Share your science at Natural Products in the 21st Century (NP21C) — 9–11 Feb 2026, Leuven Join researchers exploring genomics, metabolomics & microbial natural products! www.conferencemanager.dk/naturalprodu... #NP21C #secmet @tilmweber.bsky.social @marnixmedema.bsky.social @kblin.bsky.social
conferencemanager.dk
Natural Products in the 21st Century Conference
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Nadine Ziemert @nadineziemert.bsky.social · 27/09/2025
Happy to share our newest preprint. PhyloNaP as a user friendly database of phylogeny for enzymes involved in natural product production and as public repository for well curated phylogenetic trees. Happy Tree Building!!! #phylogeny #secmet #bioinformatics www.biorxiv.org/content/10.1...
biorxiv.org
PhyloNaP: a user-friendly database of Phylogeny for Natural Product-producing enzymes
Phylogenetic analysis is widely used to predict enzyme function, yet building annotated and reusable trees is labor-intensive and requires extensive knowledge about the specific enzymes. Existing reso...
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A. Berçin Barlas @aysebercinb.bsky.social · 22/08/2025
🚀 Excited to share that our article with @ezgikaraca.bsky.social is now published in Communications Biology! In this study, we explored DNA readout rules of almost identical DNMT3A and DNMT3B (91% sequence similarity!), and we asked: how can nearly the same proteins “see” DNA so differently? 🧬✨
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Nadine Ziemert @nadineziemert.bsky.social · 08/07/2025
Check out the Ziemert Lab’s new YouTube channel m.youtube.com/@ZiemertLab We’ve uploaded short tutorial videos on how to use our tools for genome mining and natural product discovery. Thanks Semih, @martinaadamek.bsky.social @turgutmesut.bsky.social ! #GenomeMining #SecMet #naturalproducts
m.youtube.com
ZiemertLab
The Ziemert lab is interested in the evolution and distribution of bacterial secondary metabolites. These bioactive compounds are especially important in human medicine as the chemical scaffolds are t...
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Aileen Berasategui @berasymbionts.bsky.social · 06/05/2025
🎉 We’re hiring! Two ERC-funded #PostdocJobs on insect–phytopathogen mutualisms are available in my lab. Explore the chemical and molecular evolution of symbioses! 🧪Chemical ecology: tinyurl.com/chem-ecol-symb 🦠Phytopathology & mutualisms: tinyurl.com/symb-plantpath #SymbioSky #PlantPathology
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