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An(drew) McC

@arm61.bsky.social
86 followers 74 following 33 posts

interested in how atoms move and how to model and measure them | lecturer in chemistry in bristol scams-research.github.io

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An(drew) McC @arm61.bsky.social · 14/07/2026
The facilities have been running at 80% for the last three or so years due to real-cost budget cuts. These 15% cuts are on top of that.
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An(drew) McC @arm61.bsky.social · 13/07/2026
I have drafted a form letter that can be sent to local MPs if you are concerned about the cuts to STFC multidisciplinary facilities: stfc-open-letter.co.uk/email
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An(drew) McC @arm61.bsky.social · 13/07/2026
PPAN researchers may be safe. But the cost is instead being felt by our world leading multidisciplinary facilities, the scientists that use them, and the amazing staff that work at them.
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An(drew) McC @arm61.bsky.social · 10/06/2026
Open letter showing support for these resources is still open for signatures: stfc-open-letter.co.uk
stfc-open-letter.co.uk
STFC Open Letter
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An(drew) McC @arm61.bsky.social · 10/06/2026
www.theguardian.com/education/20... The UK has world-leading scientific facilities, including @isisneutronmuon.bsky.social and @diamondlightsource.bsky.social. Cuts to STFC and ongoing uncertainty are putting those facilities at risk. It is on the user communities to fight to these facilities.
theguardian.com
World-leading UK science facilities at risk amid £162m funding crisis
Diamond Light Source and ISIS Neutron and Muon Source face cuts of up to 20% as Science and Technology Facilities Council seeks savings
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Jarvist Moore Frost @jarvist.bsky.social · 08/06/2026
Motivated by the latest round of undergraduate project report reading and marking, I wrote a little essay / group guide to using LLMs in science. As I thought this might be useful beyond my little research group, I made it public: docs.google.com/document/d/1...
docs.google.com
The Hitchhiker's Guide to AI in the Frost group
The Hitchhiker's Guide to 'AI' in the Frost group Jarvist Moore Frost - 2026-05-26, updated 2026-06-08 Large Language Models (ChatGPT, Google Gemini, Anthropic's Claude, Deepseek, etc.) are powerfu...
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Michael O’Neill @michaeloneill.org · 03/06/2026
Not being dramatic, but this probably signals the effective end of Chemistry in English Universities. An *efficient* Department loses something like £2k per Chemistry student per year; this change will roughly double that loss. Universities would be mad to keep teaching Chemistry.
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tef @tef.bsky.social · 17/03/2026
wait, fuck, this is gorillaz
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An(drew) McC @arm61.bsky.social · 10/03/2026
I am concerned that researchers like me, whose work may be supported by #EPSRC but requires access to #STFC facilities, aren’t talking enough about the impacts that budget cuts will have on our ability to do science. I have written my thoughts down here: mccluskey.scot/2026/03/09/t....
lnkd.in
LinkedIn
This link will take you to a page that’s not on LinkedIn
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Prof Rachel Oliver @profrachelgan.bsky.social · 12/01/2026
Following coverage over the weekend of Sir Paul Nurse's comments that suggested that the only reason that a Fellow should be expelled from @royalsociety.org is scientific misconduct, I have written to him to explain the risks such an attitude poses of increasing sexual harassment in STEM.
Dear Sir Paul,

Re: Royal Society Code of Conduct

I am sure that many scientists have written to you about the specific question of Elon Musk’s Fellowship and whether, under the Royal Society’s Code of Conduct, his retaining that Fellowship is appropriate. I will not rehash these issues.  Instead, as a female scientist with extensive experience of activities aiming to increase equality, diversity and inclusion in the engineering and physical sciences sector, I am writing to you (in a personal capacity) to ask you to reconsider the statements you have recently made in this context to the UK press about the Royal Society’s Code of Conduct and how it is applied.  

A 2018 report  from the joint National Academies of the United States of America, concluded that “sexual harassment is common in academic science, engineering, and medicine” and that “greater than 50 percent of women faculty and staff and 20–50 percent of women students encounter or experience sexually harassing conduct in academia”.  This report described codes of conduct that make clear that sexual harassment is unethical and will not be tolerated as a “powerful incentive for change”. The authors also noted that sexual harassment can have significant and damaging effects on the integrity of research.  In my own praxis, I have found that clear and consistently-implemented codes of conduct that address these issues make female scientists and engineers safer, and allow them to focus more effectively on their research.  For codes of conduct to have such a positive effect, it is vital that sanctions for actions which transgress the code are meaningful and substantial.

I was hence aghast to realise that in an interview with the Financial Times  published on 9/1/26, you appear to have suggested that the Royal Society “should only expel fellows if their science proved “faulty or fraudulent or highly defective””.  Moreover, in a further interview with the Guardian  on 11/1/26 you suggested that the code “may need to be looked at again”, with the implication that your aim would be to remove the option of sanctions on Fellows for reasons not strictly related to faults or defects in their research. 

I suggest that changing the Royal Society’s code of conduct so that the likelihood of serious sanctions for sexual harassment is reduced, would directly endanger women who interact with the Royal Society at events or otherwise, and would provide a licence to harass to the already powerful people on whom the Society bestows fellowship.  The implications of your words - that under your leadership the only infringements of the code which are likely to receive the sanction of the Fellowship being removed are those related to research misconduct - already risk empowering harassers.  You stated, in the Financial Times interview, that “there’s many bad people around, but they have made scientific advances”.  Given this awareness of the possibility of bad actors in our scientific community, it is wholly irresponsible to suggest that the Royal Society would not act to sanction these people if they harass more vulnerable scientists.

I am hence writing to request that you retract any suggestion that the Society’s Code of Conduct should be changed so that the only reason a Fellow might be sanctioned by the removal of their Fellowship is “faulty or fraudulent or highly defective” research.  This action is necessary to safeguard female scientists, a requirement placed on the Society by safeguarding legislation and UK statutory guidance. 

Yours sincerely,

Professor Rachel A. Oliver.
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An(drew) McC @arm61.bsky.social · 29/10/2025
Big day for me.
An Oreo consisting of three black bits and two white centres.
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An(drew) McC @arm61.bsky.social · 09/09/2025
*Probably* become a Bayesian…
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An(drew) McC @arm61.bsky.social · 15/08/2025
We have just released kinisi-2.0.0. This new release represents a substantial rewrite of the kinisi package: improving stability, reducing technical debt, and most significantly integrating the scipp library. Check it out for all your diffusion analysis needs! kinisi.readthedocs.io
kinisi.readthedocs.io
Accurate Estimation of Diffusion Coefficients and their Uncertainties — kinisi 2.0.0 documentation
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scanlond81.bsky.social @scanlond81.bsky.social · 04/08/2025
PLEASE REPOST: We have a 4-year, fully funded PhD studentship focussed on using computational chemistry to find new and improved oxides for X-ray detection, to start in October 2025. findaphd.com/phds/project.... This is open only to UK nationals.
findaphd.com
Computational discovery of novel oxide-based X-ray detectors at University of Birmingham on FindAPhD.com
PhD Project - Computational discovery of novel oxide-based X-ray detectors at University of Birmingham, listed on FindAPhD.com
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An(drew) McC @arm61.bsky.social · 02/07/2025
Can people please stop using black and red symbols to disambiguate different datasets in plots…
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Royal Society of Chemistry @rsc.org · 17/06/2025
Early career scientists in materials chemistry – join us for an exciting event. Showcase your research in poster and flash presentations, network, enhance your skills and develop your career. Don’t miss out.   Find out more buff.ly/wZKrQIc #ChemSky
Promotional image for the Royal Society of Chemistry's Materials Chemistry Poster Symposium, featuring a colourful abstract design, happening on 25 November 2025 in London, UK, with a button to submit an abstract.
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Science Magazine @science.org · 06/06/2025
#NextGenSci asked young scientists to write a rule that all principal investigators should be required to follow to improve the experience of young scientists in their lab. Check out their answers on #NationalHigherEducationDay: scim.ag/45zsFEr
Illustration of two people, one holding a large pencil, the other walking along a path of diverging arrows. Hedline is "Rules all PIs should follow."
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An(drew) McC @arm61.bsky.social · 30/05/2025
I am a big Julia fan (though the lack of object orientation slightly breaks my brain whenever I try to use it). The Python in Chemistry community is unfortunately named; we aren't just interested in Python, but keen to develop all "digital skills" in chemistry students.
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An(drew) McC @arm61.bsky.social · 30/05/2025
Allow me to correct myself then: Welcome to the *Scottish* Isles chemistry community! 🏴󠁧󠁢󠁳󠁣󠁴󠁿
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An(drew) McC @arm61.bsky.social · 30/05/2025
Might have been the raised by Rangers fans coming out…. What is the preferred collective term for these those islands in Ireland? (Asking cause I genuinely thought I had got it right!)
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An(drew) McC @arm61.bsky.social · 29/05/2025
Welcome to the British Isles chemistry community! Happy to have another “digital” (broadly defined) chemist around. The pythoninchemistry.org network is always looking for people keen on coding.
pythoninchemistry.org
Welcome to Python in Chemistry! — Python in Chemistry
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An(drew) McC @arm61.bsky.social · 22/05/2025
How munch will Kingsmill/Hovis pay me for the advertising tagline “Live Laugh Loaf”?
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An(drew) McC @arm61.bsky.social · 22/05/2025
Great to see Harry’s first paper coming out. Fantastic leadership from Josh to solve this problem (that he had been agonising with for years!).
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An(drew) McC @arm61.bsky.social · 22/05/2025
Computing the centre of mass of something? You might be doing it wrong. Luckily Harry Richardson, Josh Dunn, and I have some solutions for you. doi.org/10.1063/5.02... #compchem #chemsky
doi.org
On the estimation of center of mass in periodic systems
Calculation of the center of mass of a group of particles in a periodically repeating cell is an important aspect of chemical and physical simulations. One popu
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Cole Group @colegroupncl.bsky.social · 19/05/2025
Now out in @jacs.acspublications.org ! 🎉 : "MACE-OFF: Short-Range Transferable Machine Learning Force Fields for Organic Molecules" by Dávid Kovács, @jhmchem.bsky.social, & team: pubs.acs.org/doi/10.1021/...
pubs.acs.org
MACE-OFF: Short-Range Transferable Machine Learning Force Fields for Organic Molecules
Classical empirical force fields have dominated biomolecular simulations for over 50 years. Although widely used in drug discovery, crystal structure prediction, and biomolecular dynamics, they generally lack the accuracy and transferability required for first-principles predictive modeling. In this paper, we introduce MACE-OFF, a series of short-range transferable force fields for organic molecules created using state-of-the-art machine learning technology and first-principles reference data computed with a high level of quantum mechanical theory. MACE-OFF demonstrates the remarkable capabilities of short-range models by accurately predicting a wide variety of gas- and condensed-phase properties of molecular systems. It produces accurate, easy-to-converge dihedral torsion scans of unseen molecules as well as reliable descriptions of molecular crystals and liquids, including quantum nuclear effects. We further demonstrate the capabilities of MACE-OFF by determining free energy surfaces in explicit solvent as well as the folding dynamics of peptides and nanosecond simulations of a fully solvated protein. These developments enable first-principles simulations of molecular systems for the broader chemistry community at high accuracy and relatively low computational cost.
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An(drew) McC @arm61.bsky.social · 30/04/2025
Gotcha. mpl-for life ❤️
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An(drew) McC @arm61.bsky.social · 30/04/2025
What do you mean by “GUI tools vs code based”?
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An(drew) McC @arm61.bsky.social · 23/04/2025
Come work with me. It will be fun, I promise!
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Kasper Tolborg @kaspertolborg.bsky.social · 07/03/2025
Open PhD position in computational materials chemistry As part of my Villum Young Investigator project "Entropy in materials design: Accelerated discovery of disordered solid electrolytes", I am looking for PhD student to join my group. Please share with anyone interested! #compchem #chemsky
vacancies.aau.dk
PhD Stipend/Integrated PhD Stipend In Computational Materials Chemistry
A PhD stipend or integrated PhD stipend in computational materials chemistry is available. Development of new sustainable energy materials, including materia...
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Rafael C. Bernardi @rcbernardi.bsky.social · 17/02/2025
🚀 First Bluesky Post! 🎉 VMD 2.0 Alpha is here! Released today at BPS 2025, this is the biggest update in 30 years—new UI, real-time ray tracing, fast surfaces, UHD & touchscreen support. Monthly updates coming in 2025! Try it now! #VMD #BPS2025 #MolecularVisualization www.ks.uiuc.edu/Research/vmd...
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Sandra Gómez @quimicafisica1.bsky.social · 15/02/2025
Less than two weeks left to register for the 2025 CECAM Flagship school in computational photochemistry: shorturl.at/xsbEa with lectures from Basile Curchod, Javier Segarra, Javier Cerezo, Roger Bello and myself. Please spread the word! #compchem #compchemsky
shorturl.at
CECAM - Quantum and Mixed Quantum Classical Dynamics in Photochemistry
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An(drew) McC @arm61.bsky.social · 11/02/2025
Is there not already a discussion around stopping publishing there over the “Article Development Charge” (fee to submit if you plan to publish open access)?
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Christoph Jacob @christophjacob.eu · 10/02/2025
The @acs.org has deleted its website on diversity, equity, inclusion and respect. www.acs.org/about/divers...
acs.org
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An(drew) McC @arm61.bsky.social · 31/01/2025
🏉 🎶 It’s the most wonderful time of the year 🎶 🏉
Screenshot of the results of a Google search for “when does the six nations start”, showing that the first game is today.
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Neil Champness @nchampness.bsky.social · 15/01/2025
A great new opportunity to join us at Birmingham School of Chemistry. We are looking for a highly talented computational chemist to join our growing community. Deadline February 2.
jobs.ac.uk
Assistant Professor of Computational Chemistry for Synthesis & Materials at University of Birmingham
Start your UK & international job search for academic jobs, research jobs, science jobs and managerial jobs in leading universities and top...
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Micaela Matta @micaelamatta.bsky.social · 30/01/2025
YES 👏🏻
ukri.org
UKRI is increasing PhD stipends and improving student support
UKRI is increasing the minimum stipend we pay PhD students by 8% to £20,780 from 1 October 2025 and updating our doctoral training grant terms and conditions.
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Prof Ross Forgan @forganross.bsky.social · 30/01/2025
The School of Chemistry @uofgchem.bsky.social at the University of Glasgow @uofglasgow.bsky.social is recruiting a permanent lecturer/senior lecturer in Physical Chemistry. Apply by 21 Feb. Come join us! www.jobs.ac.uk/job/DLQ320/l...
jobs.ac.uk
Lecturer / Senior Lecturer in Physical Chemistry at University of Glasgow
An academic position as a Lecturer / Senior Lecturer in Physical Chemistry is being advertised on jobs.ac.uk. Click now to find more details and explore additional academic job opportunities.
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An(drew) McC @arm61.bsky.social · 27/01/2025
Tillykke! Meget fortjent 👏👏👏
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Krystal Vasquez @kvasquez.bsky.social · 27/01/2025
I'm hearing that NSF panels have been canceled. Did any #ChemSky folks get a cancelation email today? Would appreciate hearing from you for a potential @cenmag.bsky.social article. Reach me via DM, email (k_vasquez@acs.org) or Signal (kvasquez.12)
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An(drew) McC @arm61.bsky.social · 27/01/2025
Excited to share Harry Richardson’s first paper, which has gone live on arXiv. If you have ever calculated the centre of mass of a simulated molecule, I would recommend giving it a read. arxiv.org/abs/2501.14578 #compchem
arxiv.org
On the Estimation of Centre of Mass in Periodic Systems
Calculation of the centre of mass of a group of particles in a periodically-repeating cell is an important aspect of chemical and physical simulation. One popular approach, described by Bai and Breen,...
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An(drew) McC @arm61.bsky.social · 25/01/2025
I am curious about the decision that commits are required to build on Digital Discovery papers. Why not broaden this so that commits can build on papers from other journals?
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An(drew) McC @arm61.bsky.social · 13/01/2025
Probably late to this party, but just learned Cartesian refers to René Descartes…
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Jean-Philip Piquemal @jppiquem.bsky.social · 03/01/2025
#compchem Good read: Accurate Estimation of Diffusion Coefficients and their Uncertainties from Computer Simulation #compchemsky pubs.acs.org/doi/10.1021/...
pubs.acs.org
Accurate Estimation of Diffusion Coefficients and their Uncertainties from Computer Simulation
Self-diffusion coefficients, D*, are routinely estimated from molecular dynamics simulations by fitting a linear model to the observed mean squared displacements (MSDs) of mobile species. MSDs derived...
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An(drew) McC @arm61.bsky.social · 30/12/2024
This project started back in 2019. It is probably one of the favourite papers I have ever been involved in and describes the methodology behind the kinisi Python package. kinisi.rtfd.io
kinisi.readthedocs.io
Uncertainty quantification in diffusion — kinisi 1.1.1 documentation
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An(drew) McC @arm61.bsky.social · 30/12/2024
Ending the year with the nice closure of finally getting a long running project published. doi.org/10.1021/acs....
doi.org
Accurate Estimation of Diffusion Coefficients and their Uncertainties from Computer Simulation
Self-diffusion coefficients, D*, are routinely estimated from molecular dynamics simulations by fitting a linear model to the observed mean squared displacements (MSDs) of mobile species. MSDs derived from simulations exhibit statistical noise that causes uncertainty in the resulting estimate of D*. An optimal scheme for estimating D* minimizes this uncertainty, i.e., it will have high statistical efficiency, and also gives an accurate estimate of the uncertainty itself. We present a scheme for estimating D* from a single simulation trajectory with a high statistical efficiency and accurately estimating the uncertainty in the predicted value. The statistical distribution of MSDs observable from a given simulation is modeled as a multivariate normal distribution using an analytical covariance matrix for an equivalent system of freely diffusing particles, which we parametrize from the available simulation data. We use Bayesian regression to sample the distribution of linear models that are compatible with this multivariate normal distribution to obtain a statistically efficient estimate of D* and an accurate estimate of the associated statistical uncertainty.
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Kasper Tolborg @kaspertolborg.bsky.social · 16/12/2024
📣 Postdoc position in computational materials chemistry available I am looking for a postdoc to join my group and work on computational design of disordered crystalline materials Read more and apply here: www.vacancies.aau.dk/scientific-p... Repost are highly appreciated! #compchem
vacancies.aau.dk
Postdoc in Computational design of disordered crystalline materials (2024-224-06155)
A postdoc position in computational materials chemistry is available to design sustainable materials with tailored disorder using computational chemistry and...
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Shannon Mattern @shannonmattern.bsky.social · 09/12/2024
"Women full professors are 19% more likely than men at the same career stage to leave academia, as compared with 6% for women assistant professors and 10% for associates."
science.org
Women faculty feel ‘pushed’ from academia by poor workplace climate
The gender gap in faculty attrition worsens after tenure, according to a new study
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An(drew) McC @arm61.bsky.social · 11/12/2024
I think the Campsie Fells are slightly skewing your interpretation there.
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An(drew) McC @arm61.bsky.social · 10/12/2024
In the end, everything is just a Fourier transform.
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Robert Aboukhalil @robert.bio · 04/12/2024
“We don’t value software, data, and methods in the same way we value papers, even though those resources empower millions of scientists” 💯 www.statnews.com/sponsor/2024...
statnews.com
New report highlights the scientific impact of open source software
Two of the scientists who won this year’s Nobel Prize for cracking the code of proteins’ intricate structures relied, in part, on a series of computing
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