Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 09/10/2026For the latest phylogenetic/phylodynamic analysis (as well as a large range of other epidemiological data visualisations) see the INRB Epidemic Intelligence Dashboard - inrb-umie.github.io/BDBV2026-Epi...inrb-umie.github.io 011
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 09/10/2026"Temporal and Phylodynamic analyses of the 2026 Bundibugyo virus disease outbreak in the Democratic Republic of the Congo" - www.medrxiv.org/content/10.6...medrxiv.orgTemporal and Phylodynamic analyses of the 2026 Bundibugyo virus disease outbreak in the Democratic Republic of the CongoThe Democratic Republic of the Congo is experiencing a major outbreak of Ebola disease caused by Orthoebolavirus bundibugyoense (Bundibugyo virus), which was declared on May 15, 2026. To investigate t... 12519
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 30/09/2026The previous ebolavirus outbreak in DRC - only a year ago: 092
Reposted by Andrew Rambaut (🐏🎀)Nature Microbiology @natmicrobiol.nature.com · 30/09/2026Out Now! A generalized lineage nomenclature for viral genomic epidemiology #MicroSkygo.nature.comA generalized lineage nomenclature for viral genomic epidemiologyNature Microbiology, Published online: 30 September 2026; doi:10.1038/s41564-026-02468-3This study extends the Pango lineage nomenclature system beyond SARS-CoV-2, introducing a dynamic framework for tracking and communicating viral diversity, demonstrated through its application to CHIKV. 02015
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 16/09/2026I love the innovative use of the annoying extra 'a' for 'and' in the acronym. 010
Reposted by Andrew Rambaut (🐏🎀)Claus Wilke @clauswilke.com · 15/09/2026I wrote up my thoughts about the COVID origin. I don't plan to weigh in on the topic beyond this one post for the next five years or so. Looking into what the evidence says once or twice every decade feels like a good cadence. blog.genesmindsmachines.com/p/it-still-w...blog.genesmindsmachines.comIt still wasn’t a lab leakSix years in, all the evidence points in one direction 23718
Reposted by Andrew Rambaut (🐏🎀)Stuart Neil @tetherin.bsky.social · 01/09/2026Fantastic article about the life and work of Bob Garry that highlights both the personal and scientific costs that the conspiracy theory industry has had on Global public health and the scientists who have dedicated their lives to fighting infectious diseases www.bloomberg.com/news/feature...bloomberg.comA Top Virus Scientist Stared Down Covid Lab-Leak Proponents. Now His Life’s Work Is at StakeThe battle over Covid’s origins has come for Bob Garry, who’s faced some of the world’s deadliest viral threats. 26532
Reposted by Andrew Rambaut (🐏🎀)Claus Wilke @clauswilke.com · 30/08/2026I'm really frustrated by the constant fear-mongering about AI-designed superviruses. Can we focus on the things that should actually worry us, such as measles? blog.genesmindsmachines.com/p/im-sorry-y...blog.genesmindsmachines.comI'm sorry, you're not going to die from an AI-engineered supervirusGod save us from economists who think they can competently talk about biology 412557
Reposted by Andrew Rambaut (🐏🎀)Stefan Pöhlmann @snpoehlm.bsky.social · 25/08/2026🧪An exciting new preprint offers insights into how SARS-CoV-2 and other coronaviruses can acquire cleavage motifs for the cellular protease furin. A thread on the importance of the furin motif in the SARS-CoV-2 spike and its possible origins.🧵 25820
Reposted by Andrew Rambaut (🐏🎀)Kristian G. Andersen @kgandersen.bsky.social · 25/08/2026Everything you might ever want to know about the furin cleavage site in SARS-CoV-2. 25019
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 25/08/2026They definitely exist: Relman: "the fact that publications by Chinese researchers indicate knowledge about the Sars-CoV-2 virus before late December 2019" www.theguardian.com/commentisfre... ...but they don't seem to be on GoogleScholar. 150
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 13/08/2026I wonder if a whale fin identification machine learning classifier would work on these people's weird (but possibly unique) pattern of bits and bobs on their chests? www.nature.com/articles/s41...nature.comFIN-PRINT a fully-automated multi-stage deep-learning-based framework for the individual recognition of killer whales - Scientific ReportsScientific Reports - FIN-PRINT a fully-automated multi-stage deep-learning-based framework for the individual recognition of killer whales 020
Reposted by Andrew Rambaut (🐏🎀)Flo Débarre @flodebarre.eurosky.social · 04/08/2026Today is the first Tuesday of the month, my (self-imposed) blog posting day -- I wrote about accusations of coverup and conspiracies, thrown without any evidence, in the context of the recent release of private documents by Rand Paul #covidoriginpandemonium.hypotheses.orgConspiracies and coverupsThere is no evidence for a lab origin of SARS-CoV-2, so commenters default to meta-discourse and accuse scientists of coverups, for which there is no evidence either. So far, available data and scient... 02815
Reposted by Andrew Rambaut (🐏🎀)Michael Hobbes @michaelhobbes.bsky.social · 30/07/2026The scientists then published a research paper demonstrating that the virus showed no signs of being engineered. This paper has not been debunked or retracted. No evidence of engineering has emerged. In the conclusion the paper says, “but it could still be a lab leak.” 11108377
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 23/07/2026This is so important - allowing individual uses of data to be tracked as citations will be so useful for demonstrating impact and reach of genome data. When you use data from Pathoplexus, create a SetSet & DOI for the sequences used and cite it in your paper. 0155
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 18/07/2026Do all mathematicians get trained to write equations in mirror writing on glass walls? 100
Reposted by Andrew Rambaut (🐏🎀)Onisillos @onisillos.bsky.social · 14/07/2026As I was foolish enough to read the recent Atlantic article on covid origins, I will re-share my takes on this topic to cleanse myself: www.thelancet.com/journals/lan... and www.thelancet.com/journals/lan... 13611
Reposted by Andrew Rambaut (🐏🎀)ARTIC network @artic.network · 09/07/2026139 genomes now sequenced from the ongoing 2026 Bundibugyo virus disease outbreak in DRC, spanning 16 Health Zones. Led by INRB with support from the ARTIC network (Wellcome Trust and Gates Foundation). Full analysis: virological.org/t/genomic-ep...virological.orgGenomic epidemiology of the ongoing 2026 Bundibugyo Virus Disease outbreak in the Democratic Republic of the CongoGenomic epidemiology of the ongoing 2026 Bundibugyo Virus Disease outbreak in the Democratic Republic of the Congo Institut National de Recherche Biomédicale (INRB), Kinshasa – DRC and partners Conte... 1189
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 05/07/2026I recommend one of ones that overlook the Botanical Gardens at the back. I am sure they are affordable. 110
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 27/06/2026Thanks! You might like to try PearTree - peartree.live or desktop versions at github.com/artic-networ...peartree.livePearTree — Phylogenetic Tree Viewer 120
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 17/06/2026And you should pick up some tablet from Edinburgh for your return. Fudge House on Royal Mile or Candersons on Leith Walk - both good sources. 220
Reposted by Andrew Rambaut (🐏🎀)Isabel, booonyavirus wonk @isabelott.bsky.social · 13/06/2026Unsurprising to anyone acquainted with the start of Fatboy Slim’s musical career: playing bass in The Housemartins, an openly socialist indie rock band. As their best-known hit – an a capella cover of an R&B song – declared: everybody take a stand, & join the caravan of love! 45328
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 13/06/2026Counting down for a Glaswegian to say "Glasgow"... 130
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 13/06/2026www.realmarykingsclose.comrealmarykingsclose.comThe Real Mary King's Close | Best UK AttractionWelcome to The Real Mary King's Close. One of Edinburgh's top attractions and only preserved 17th-century street. 110
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 13/06/2026Mary's Milk Bar on Grassmarket (below the Castle) for the best gelato. 100
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 13/06/2026If it is wet (I am sure it won't be) then the National Museum and the Museum of Scotland (next to each other) are great - the latter in particular. See Dolly the Sheep. 000
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 13/06/2026Walk across Holyrood Park (Salisbury Craigs and Arthur's Seat - the old volcano for some geology - www.scottishgeologytrust.org/geology/51-b...) and then to Duddingston for lunch/skittles at the Sheep Head Inn.scottishgeologytrust.orgHolyrood Park, Edinburgh – Scottish Geology Trust 000
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 13/06/2026If you go to North Berwick you can do the boat out to the Isle of May for sea birds. 020
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 13/06/2026Art and museums - www.jupiterartland.org in particular for kids.jupiterartland.orgEdinburgh's Award-Winning Contemporary Sculpture GardenExperience Edinburgh's award-winning sculpture garden. Explore contemporary art across 120 acres of meadow, woodlands and indoor galleries. 000
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 12/06/2026The average wealth of a Fellow of the @royalsociety.org is now over 0.5 billion dollars. 2152
Reposted by Andrew Rambaut (🐏🎀)Glen O'Hara @gsoh31.bsky.social · 11/06/2026Today I've written for Arguably on one big mystery in our public life: why does no-one care about the existential crisis of our universities? Read all about it... 👇 www.arguably.uk/p/the-quiet-...arguably.ukThe quiet collapse of British universitiesOne of our great triumphs and economic advantages is fading away 312970
Reposted by Andrew Rambaut (🐏🎀)The Royal Society @royalsociety.org · 05/06/2026Professor Joe Felsenstein FRS is elected a Fellow of the Royal Society. After initially working on population genetics theory of recombination, of migration, and of speciation, his main focus has been on phylogenetic inference. #RSFellows royalsociety.org/people/joseph-fels… 115640
Reposted by Andrew Rambaut (🐏🎀)Kristian G. Andersen @kgandersen.bsky.social · 04/06/2026This is extremely chilling - virologists being targeted for what appears to be minor (if any) "offenses". We all know _why_ this is happening, so I'm not going to belabor that point - but I want to provide some context on the technical details. 🧵 www.science.org/content/arti...science.orgNIH scientists plead not guilty to smuggling monkeypox viruses into U.S.Defendants face prison time for criminal charges but samples may all have been inactivated and used for routine diagnostics 6195120
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 04/06/2026A restricted case but one of the few where sufficient training material may actually be available with explicit licensing. And a large fraction of such code is in one location - GitHub (which runs its own LLM agents which don't do this). 010
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 04/06/2026A very restricted case but I could imagine a coding agent with a model that has only been trained on open-source code, following the terms of the licenses (i.e., attribution, non-commercial etc. but no Gnu licenses due to the like-for-like licensing requirement). 132
Reposted by Andrew Rambaut (🐏🎀)ARTIC network @artic.network · 01/06/2026The ARTIC Primer Foundry is now live and will soon begin shipping BDBV primers on request primalscheme.com/ordersprimalscheme.comPrimalScheme: primer panels for multiplex PCRPrimalScheme is a tool for designing primer panels for multiplex PCR. It uses a greedy algorithm to find primers for tiling amplicon generation for multiple reference genomes. 088
Reposted by Andrew Rambaut (🐏🎀)ARTIC network @artic.network · 01/06/2026Various sequencing approaches work for BDBV: amplicon panels (BDBV-specific v1.0.0 & pan-Ebola v2.0.0), bait capture (Twist/Illumina), or metagenomics. Primer schemes are available via labs.primalscheme.com and are being synthesised for free distribution on request via the new ARTIC Primer Foundrylabs.primalscheme.com 151
Reposted by Andrew Rambaut (🐏🎀)ARTIC network @artic.network · 01/06/2026ARTIC network has published Bundibugyo (BDBV) sequencing resources as the 2026 outbreak continues in DRC & Uganda. We have compiled guidance for labs wishing to sequence, assemble and analyse BDBV genomes: artic.network/viruses/bdbv/bdbv-sequencing-guide.htmlartic.networkBundibugyo virus genomic sequencing resources | ARTIC network - pathogen genomics from sample to response 12613
Reposted by Andrew Rambaut (🐏🎀)Prof Gavin Yamey MD MPH @gavinyamey.bsky.social · 31/05/2026🎧 Starting a new thread! 20 of my fave trip-hop tunes Based on its history & cultures, only one city on earth could have birthed it: Bristol Trip-hop drew on dub, soul & hip-hop & came out of sound systems—like the Wild Bunch—in mostly Black neighborhoods It spread nationally & globally 2/22 45210
Reposted by Andrew Rambaut (🐏🎀)S Otto @sarperotto.bsky.social · 31/05/2026Globally, genomic data sharing has improved greatly over the past year for the highly pathogenic avian flu H5N1. Some great news and a major concern... virological.org/t/timely-h5n...virological.orgTimely H5N1 sequence data now provided by many – but not all – countriesSarah Otto* * Department of Zoology & Biodiversity Research Centre, The University of British Columbia, Vancouver BC Canada V6T 1Z4. E-mail: otto@zoology.ubc.ca A year ago, we raised concerns about ... 1166
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 28/05/2026Should also mention treerobber, treeburglar, treeshoplifter, treesnatcher*, treepickpocket, treemugger, treelarcenist, treestealer, treepilferer, treepoacher; treeraider, treelooter, treeplunderer, treepillager, treebandit, treepirate, and of course treehighwayman. *actually this one is real 140
Reposted by Andrew Rambaut (🐏🎀)Jeremy Berg @jeremymberg.bsky.social · 28/05/2026A timely review of Matt Ridley's arguments and book. An engaging read.... www.the-gallop.com/review-matt-...the-gallop.comReview: Matt Ridley's "Viral" Case for a Lab LeakMatt Ridley went from calling a lab leak “slightly more probable” in 2021 to “almost certainly correct” in 2026. Yet, as his original case in Viral collapsed, his certainty now rests on a 12-nucleotide "God of the Gaps." 192