Reposted by Ankur ParikhSu-In Lee @suinlee.bsky.social · 24/11/2024Here’s the updated Computational Biology Starter Pack! Let me know if you'd like to be included. go.bsky.app/QVPoZXp 8017577 175
Reposted by Ankur ParikhMarc Lanctot @sharky6000.bsky.social · 28/10/2024New starter pack! go.bsky.app/GZ4hZzu 64217 42
Reposted by Ankur ParikhSrijit Seal 🇺🇸🇬🇧🇩🇪🇯🇵🇮🇳 @srijitseal.com · 21/11/2024We translated a validation strategy in Materials to Small molecules. A key problem in cross-validation is splitting of data. Here we propose a step-forward CV. People are used to scaffold splits, time splits etc. but these all have limitations.openreview.netOut-of-Distribution Validation for Bioactivity Prediction in Drug...Recent advances in machine learning for materials science have significantly improved the prediction of novel materials. Building on these methods, we have adapted them for drug discovery... 1173 17
Reposted by Ankur ParikhMichael Skinnider @skinnider.bsky.social · 19/11/2024Thrilled to share our approach for language model-guided discovery of unknown mammalian metabolites: DeepMet. We’ve now used this approach to discover ~50 new human and mouse metabolites! www.biorxiv.org/content/10.1...biorxiv.orgLanguage model-guided anticipation and discovery of unknown metabolitesDespite decades of study, large parts of the mammalian metabolome remain unexplored. Mass spectrometry-based metabolomics routinely detects thousands of small molecule-associated peaks within human ti... 0124 12
Reposted by Ankur ParikhKevin K. Yang 楊凱筌 @kevinkaichuang.bsky.social · 18/11/2024Two BioML starter packs now: Pack 1: go.bsky.app/2VWBcCd Pack 2: go.bsky.app/Bw84Hmc DM if you want to be included (or nominate people who should be!) 1011956 119
Reposted by Ankur ParikhCaitlin Mellor @caitlinmellor.bsky.social · 15/11/2024A starter pack for anyone interested in AI & drug discovery :) go.bsky.app/AgYHc8j 295315 53
Reposted by Ankur ParikhWillie Neiswanger @willieneis.bsky.social · 10/11/2024I'm making a list of AI for Science researchers on bluesky — let me know if I missed you / if you'd like to join! go.bsky.app/AcP9Lix 16225389 253
Reposted by Ankur ParikhBen Blaiszik @benblaiszik.bsky.social · 16/11/2024This pack is now up to 67 people, broadly in AI and advanced data for science. Follow along, and forward me others who should be there! 🦋🦋 go.bsky.app/JeFdryY 224515 45
Reposted by Ankur ParikhJessy Li @jessyjli.bsky.social · 15/11/2024We got an 🥂 Outstanding Paper Award!! Cannot be more grateful 🥹 This is super validating for our long pursuit of computational work on QUD. Congrats to the amazing @yatingwu.bsky.social, Ritika Mangla, Alex Dimakis, @gregdnlp.bsky.social 1589 58
Reposted by Ankur ParikhKevin K. Yang 楊凱筌 @kevinkaichuang.bsky.social · 14/11/2024Evo: A genomic language model of prokaryote genomes generates functional cas9 proteins and transposons. @brianhiestand.bsky.social www.science.org/doi/10.1126/... 05927 59