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Ankur Parikh

@ankur-parikh.bsky.social
3.3K followers 411 following 10 posts

Staff Research Scientist at Google DeepMind. ML for Biology and Chemistry (Previously NLP). Former adjunct assistant prof at NYU. All opinions my own. scholar.google.com/citations?user=b…

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Reposted by Ankur Parikh
Su-In Lee @suinlee.bsky.social · 24/11/2024
Here’s the updated Computational Biology Starter Pack! Let me know if you'd like to be included. go.bsky.app/QVPoZXp
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Reposted by Ankur Parikh
Marc Lanctot @sharky6000.bsky.social · 28/10/2024
New starter pack! go.bsky.app/GZ4hZzu
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Reposted by Ankur Parikh
Srijit Seal 🇺🇸🇬🇧🇩🇪🇯🇵🇮🇳 @srijitseal.com · 21/11/2024
We translated a validation strategy in Materials to Small molecules. A key problem in cross-validation is splitting of data. Here we propose a step-forward CV. People are used to scaffold splits, time splits etc. but these all have limitations.
openreview.net
Out-of-Distribution Validation for Bioactivity Prediction in Drug...
Recent advances in machine learning for materials science have significantly improved the prediction of novel materials. Building on these methods, we have adapted them for drug discovery...
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Reposted by Ankur Parikh
Michael Skinnider @skinnider.bsky.social · 19/11/2024
Thrilled to share our approach for language model-guided discovery of unknown mammalian metabolites: DeepMet. We’ve now used this approach to discover ~50 new human and mouse metabolites! www.biorxiv.org/content/10.1...
biorxiv.org
Language model-guided anticipation and discovery of unknown metabolites
Despite decades of study, large parts of the mammalian metabolome remain unexplored. Mass spectrometry-based metabolomics routinely detects thousands of small molecule-associated peaks within human ti...
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Reposted by Ankur Parikh
Kevin K. Yang 楊凱筌 @kevinkaichuang.bsky.social · 18/11/2024
Two BioML starter packs now: Pack 1: go.bsky.app/2VWBcCd Pack 2: go.bsky.app/Bw84Hmc DM if you want to be included (or nominate people who should be!)
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Reposted by Ankur Parikh
Caitlin Mellor @caitlinmellor.bsky.social · 15/11/2024
A starter pack for anyone interested in AI & drug discovery :) go.bsky.app/AgYHc8j
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Reposted by Ankur Parikh
Willie Neiswanger @willieneis.bsky.social · 10/11/2024
I'm making a list of AI for Science researchers on bluesky — let me know if I missed you / if you'd like to join! go.bsky.app/AcP9Lix
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Reposted by Ankur Parikh
Ben Blaiszik @benblaiszik.bsky.social · 16/11/2024
This pack is now up to 67 people, broadly in AI and advanced data for science. Follow along, and forward me others who should be there! 🦋🦋 go.bsky.app/JeFdryY
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Reposted by Ankur Parikh
Jessy Li @jessyjli.bsky.social · 15/11/2024
We got an 🥂 Outstanding Paper Award!! Cannot be more grateful 🥹 This is super validating for our long pursuit of computational work on QUD. Congrats to the amazing @yatingwu.bsky.social, Ritika Mangla, Alex Dimakis, @gregdnlp.bsky.social
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Reposted by Ankur Parikh
Kevin K. Yang 楊凱筌 @kevinkaichuang.bsky.social · 14/11/2024
Evo: A genomic language model of prokaryote genomes generates functional cas9 proteins and transposons. @brianhiestand.bsky.social www.science.org/doi/10.1126/...
Evo, a 7-billion-parameter genomic foundation model, learns biological complexity from individual nucleotides to whole genomes.
Pretraining a genomic foundation model across prokaryotic life.Fine-tuning on CRISPR-Cas sequences enables generative design of protein-RNA complexes.Fig. 4. Fine-tuning on IS200/IS605 sequences enables generative design of transposable biological systems.
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