Angel Pizarro @angelp.bsky.social · 21/09/2026Resident Evil may be my favorite movie of the year. 000
Angel Pizarro @angelp.bsky.social · 29/08/2026Just over 300 miles ridden on it so far. Super fun. 020
Angel Pizarro @angelp.bsky.social · 20/08/2026In that sweet spot where you are working on so many projects that you get nothing done on any of them. 020
Reposted by Angel PizarroBrendan Bouffler ('boof') @boofla.bsky.social · 07/08/2026youtu.be/eW0kK4PUKdYyoutu.beScientific software can feel like a hazing ritual. Spack solved that.YouTube video by Discovered by Compute 052
Reposted by Angel PizarroAdam Phillippy @aphillippy.bsky.social · 06/08/2026For the past 30 years, “whole-genome sequencing” has been a misnomer. Today the T2T Consortium publishes a dozen papers heralding a future of truly complete genomes for humans and nearly any vertebrate 👨🔬🐒🐦🐀🦒🐎🫏🐹🐟 (sorry, no salamanders): www.cell.com/consortium/t... 🧵[1/15] 3202106
Angel Pizarro @angelp.bsky.social · 23/07/2026Nice quality of life improvement - Parabricks migrated their docs system to Fern so that it can better serve agents with a built-in MCP server. Check out the site and get a few ways to register it in your harness: 230
Angel Pizarro @angelp.bsky.social · 21/07/2026I was having a conversation the other day about car insurance. In short they were using one of those trackers to lower their insurance rate… I am vehemently opposed to it. Insurance is for catastrophes and you do NOT want to be dealing with corp lawyers during the aftermath. Full tort is the way. 001
Reposted by Angel PizarroNextflow @nextflow.io · 14/07/2026A little-known feature of Nextflow is that it can support iterative processes - feeding process outputs back as inputs until a threshold is met. This is especially useful for ML training, molecular dynamics simulations, and other looped workflows. 📚 Find out more: hubs.la/Q04prlGh0hubs.laRunning Until: Iterative Loops in Nextflow | SeqeraNextflow can express iterative loops with a topic channel and an until check. Here's how to make a process feed on its own output, no recursion needed. 011
Angel Pizarro @angelp.bsky.social · 13/07/2026In DC for the ISMB conference this week. Have't been here is a while and it's nice to be back walking around familiar spaces. 010
Angel Pizarro @angelp.bsky.social · 30/06/2026For a conference of technical people, the ISMB website is .... really something 000
Angel Pizarro @angelp.bsky.social · 30/06/2026I think DJT is right that the average voter doesn’t care about the housing bill. It’s abstract and they wouldn’t see results until years from now (if ever). Fox is not covering it so they may not even know it exists. They only cover DJT “pressuring congress” to pass the SAVE act. 100
Angel Pizarro @angelp.bsky.social · 30/06/2026Great editorial use of AI as an assistive technology. Doesn’t outsource your voice/science/skills 010
Reposted by Angel PizarroStephen Turner @stephenturner.us · 18/06/202610 tips for getting better R code from your AI coding agent www.infoworld.com/article/4184... #Rstatsinfoworld.com10 tips for getting better R code from your AI coding agentWith the proper setup and guidance, you can have Claude Code, Codex, Posit Assistant, and other coding agents writing R code like a pro. Here’s how. 0122
Angel Pizarro @angelp.bsky.social · 16/06/2026Stroke rate a good indicator he won’t last the full term. What happens after that is anybody’s guess. 000
Angel Pizarro @angelp.bsky.social · 14/06/2026I am of the opinion that a Rust rewrite should NOT have to have “Rust” or “rs” in the name, just bump the major version number. Glad to see Rob did so with salmon. 040
Reposted by Angel PizarroRob Patro @robp.bsky.social · 14/06/2026salmon 2.0 (the rust re-write) is now live! It's also the version you get if you install via bioconda. This is a from-scratch rewrite in rust, and the base for future development. I'll post a more detailed thread tomorrow, but you can read the docs here combine-lab.github.io/salmon/combine-lab.github.iosalmonFast, accurate transcript quantification from RNA-seq reads. 25316
Angel Pizarro @angelp.bsky.social · 14/06/2026After looking at a Maeving for 4 years I decided it’s now or never. Took delivery of this awesome piece of kit a couple of days ago. 191
Reposted by Angel PizarroClara Jeffery @clarajeffery.bsky.social · 08/06/20261/ What if you put all the ways that Jared Kushner is selling out America while lining his pockets into one place? In our new cover story, @cjcmichel.bsky.social did just that www.motherjones.com/politics/202... 6731001367
Angel Pizarro @angelp.bsky.social · 18/05/2026Off to BioIT in Boston this week. Mainly to catch up with as many biotech folks as I can so we can figure out a way through this AI transformation together. 110
Angel Pizarro @angelp.bsky.social · 25/04/2026Thought of the day - striving to be the better person (taking the high road, turn the other cheek, etc) is hard sometimes. Sometimes you want to be petty but you know it’s not good for you in the long term so you hold back. Honestly I don’t know what is better but that’s how I operate 110
Angel Pizarro @angelp.bsky.social · 23/04/2026Wrote a quick blog on LinkedIn about some thoughts I've been having. www.linkedin.com/pulse/some-t...linkedin.comSome thoughts on bioinformatics and AI AgentsOver the years, the bioinformatics community has adopted software engineering best practices to bring order to the chaos of self-taught programming. We embraced concepts like DRY (Don’t Repeat Yoursel... 020
Reposted by Angel PizarroStephen Turner @stephenturner.us · 14/04/20262 years ago I went to bed feeling great, woke up next morning with a painful ear and hearing loss (which became permanent). Because of a shingles infection in my auditory nerve. Get the vaccine if you're eligible www.wired.com/story/shingl...wired.comYou Should Be More Freaked Out by ShinglesThe viral infection leaves millions with chronic pain, increased stroke risk, and lifelong nerve damage—yet vaccination rates remain dangerously low. 1185
Angel Pizarro @angelp.bsky.social · 05/04/2026I decided that this year I will be going back to my bioinformatics roots and working on ML in life sciences. I’ve been one step removed from the fray for a little over 5 years so it’ll be interesting to dive back in and see what’s what. 030
Angel Pizarro @angelp.bsky.social · 05/04/2026Nice thread summing up what everyone is going through right now. 100
Angel Pizarro @angelp.bsky.social · 01/04/2026Testing out Gemini for coding up a native macOS app for tracking espresso profiles, beans, etc. Should be interesting. Need a name for it though. Current front runners are “Grounds Control” and “Brew Base”. Suggestions welcome. 100
Angel Pizarro @angelp.bsky.social · 30/03/2026Project Hail Mary was a really great movie adaptation from the book. I agreed with a lot of what they needed to edit out for time, but it did lose some of the deeper character development as a result. 000
Angel Pizarro @angelp.bsky.social · 23/03/2026In these trying times, you gotta celebrate small enjoyments where you can: 1. I painted my home office, put up all the prints and decorations I have wanted to do since moving in two years ago. Added a hammock for thinking deep thoughts. 2. New espresso machine is on the delivery truck! So excited. 010
Reposted by Angel PizarroBoze Herrington, Library Owl @sketchesbyboze.bsky.social · 08/03/2026I get yelled at for saying this but for many hundreds of years people went to university not to get diplomas or be employable but because immersion in the humanities was considered foundational to a good life, and school must return to its original purpose: the joy of learning. 236127542770
Reposted by Angel PizarroKevin Gannon (now a Moo Deng fan account) @thetattooedprof.bsky.social · 08/03/2026we have saved daylight but at what cost 502442422
Reposted by Angel PizarroKendra "Gloom is My Beat" Pierre-Louis @kendrawrites.com · 08/03/2026Anyway, it's weird that they are saying conversations kids aren't ready for when so many kids movies center on the death of a parent. IDK, I'd rather talk about gay people then about death to a small child. 71278
Reposted by Angel PizarroPáll Melsted @pmelsted.bsky.social · 06/03/2026Excited to share this preprint that describes my latest work on using GPUs to accelerate processing of RNA-seq data. The title says it all: "RNA-seq analysis in seconds using GPUs" now on biorxiv www.biorxiv.org/content/10.6... and github github.com/pachterlab/k... Figure 1 shows they key result 618887
Reposted by Angel PizarroTobias Schmidt @tpschmidt.com · 06/03/2026Tool A gets compromised. Tool A installs Tool B. Tool B does whatever it wants. If you're running AI bots in CI/CD that touch secrets and process untrusted input (issues, PRs), you're one prompt away from full pipeline access 😅 101