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NetBio Cytoscape Visualization Competition

👋 We wrap up our #NetBio track 2025 with announcing the #Cytoscape network visualization competition winners (woobox.com/b9poce) Congrats: 1: Alejandra Paulina Perez Gonzalez 2. Michael Costanzo 3. Jong Chan Lim 👏👏👏 Exciting to have Alejandra and Jong in the audience and congrats to Michael!

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🎉 And now it is time to introduce our last and shared keynote with the Microbiome COSI: @fionabrinkman.bsky.social is talking about "Microbiome multitudes and metadata madness" connecting the #Microbiome and #NetworkBiology communities! #ISMBECCB2025

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✨ And it's already time for the last selected #NetBio talk! Piotr Sliwa is presenting "Multilayer Networks Identify Clinically Relevant Patient Endotypes in COVID-19 and Sepsis" #ISMBECCB2025 #NetworkBiology

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#NetBio talks are continuing in room 1B: Dongmin Bang is presenting his proceeding paper on "MixingDTA: Improved Drug-Target Affinity Prediction by Extending Mixup with Guilt-By-Association" doi.org/10.1093/bioi... #ISMBECCB2025 #NetworkBiology

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🔊 Nicoleta Siminea just presented her work on "Interactome-based computational solutions to support personalized drug therapy decisions in glioblastoma" at the #NetBio track at #ISMBECCB2025!

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🎤 Next up is Terence Egbelo He is sharing his research on "Improving Target-Adverse Event Association Prediction by Mitigating Topological Imbalance in Knowledge Graphs" with the #NetBio audience! ✨ #ISMBECCB2025 #NetworkBiology #KnowledgeGraphs

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✨Johannes Kersting just presented his cool #Nextflow Pipeline for Network-Based Disease Module Identification and Drug Repurposing nf-co.re/diseasemodul... github.com/nf-core/dise... #ISMBECCB2025 #NetworkBiology #NetBio

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📣Last speaker of the #NetBio morning session: Samuele Firmani is presenting GATE (Graph Antiviral Target Explorer) to predict disease genes in viral infections with Message Passing Neural Networks" #ISMBECCB2025 #NetworkBiology

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🎤 Next #NetBio talk: Erik Sonnhammer presents #FunCoup6, an upgrade to the functional association network database, now with enhanced regulatory links, a redesigned interface, and powerful new tools for comparative interactomics and disease module analysis. funcoup.org #ISMBECCB2025 #NetworkBiology

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🔊 Next in #NetBio at #ISMBECCB2025 Dewei Hu presents: SPACE: STRING proteins as complementary embeddings Cross-species network embeddings meet protein function prediction, leveraging STRING across 1,300+ eukaryotes. A powerful complement to sequence embeddings! #NetworkBiology

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⌛It's already time for our last #NetBio speaker of today: ✨🔊We are excited to welcome our 2nd keynote speaker Jan Baumbach talking about "Quantum computing for network medicine-based epistatic disease mechanism mining - Fake it till you make it?" ✨ #ISMBECCB2025 #NetworkBiology

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🎤 Next talk at #NetBio is by Aritra Bose from IBM Research presenting their work on "Quantum Random Walks for Biomarker Discovery in Biomolecular Networks". #ISMBECCB2025 #NetworkBiology

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After lots of #NetBio discussions over coffee, we are now starting the last session for today: Lucas Gillenwater is presenting his #ISMBECCB2025 proceeding paper "GRACKLE: An interpretable matrix factorization approach for biomedical representation learning". doi.org/10.1093/bioi... #NetworkBiology

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🎤 Next talk at #NetBio: @beatrizurda.bsky.social: Disentangling the genetic and non-genetic origin of disease co-occurrences #ISMBECCB2025 #NetworkBiology

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🎙️Next #NetBio talk: Kivilcim Ozturk uncovers how mutations in intrinsically disordered regions (IDRs) disrupt protein interactions in cancer, revealing potential cellular vulnerabilities. #ISMBECCB2025 #NetworkBiology

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🔊 Now presenting in our #NetBio track: Ibrahim Alsaggaf introduces Sup-EGsCL, a contrastive learning method using enhanced Gaussian noise augmentation to better predict gene longevity effects from protein-protein interaction networks. github.com/ibrahimsagga... #ISMBECCB2025 #NetworkBiology

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🚨 Excited to announce our first keynote for #NetBio 2025: Laura Cantini (@cantinilab.bsky.social)! She is sharing cutting-edge work on multi-modal learning for single-cell data integration, tackling how to combine diverse omics and spatial data to unlock new insights into cellular heterogeneity.

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📢 Next up: @SaniyaKhullar presents NetREm, a powerful new method revealing how transcription factors coordinate gene regulation across cell types. From immune cells to Alzheimer’s brains, NetREm maps regulatory networks with real-world validation. #ISMBECCB2025 #NetworkBiology

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📢 Next up at #NetBio: We're excited to welcome Mayra Luisa Ruiz Tejada Segura presenting: "Nichesphere: A Method to Identify Disease-Specific Physical Cell-Cell Interactions and Communication Networks" #ISMBECCB2025 #NetworkBiology

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🧬Excited to welcome Giulia Cesaro to present #CellGOSSIP, a novel strategy to decode cell-specific intracellular signaling from noisy single-cell data using personalized network propagation. 🎯 Reveal hidden pathway dynamics and functional cell states! #ISMBECCB2025 #NetworkBiology #NetBio

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Our #NetBio track will continue in a few minutes in room 1B with another set of great talks! Have you already seen our new logo ✨👏? Thanks @romanayanez.bsky.social for the beautiful design 🥰!

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🔊 Up next at #NetBio: Sindhura Kommu presents her work on "Prediction of Gene Regulatory Connections with Joint Single-Cell Foundation Models and Graph-Based Learning." She couldn’t join us onsite in Liverpool, but is connecting live to share her research ✨! #ISMBECCB2025 #NetworkBiology

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