Reposted by Amirali AghazadehDarin Tsui @darintsui.bsky.social · 22/09/2025Excited to announce our paper, SHAP zero, has been accepted into NeurIPS 2025! SHAP zero takes the first steps toward extracting biological insights at scale from machine learning models by amortizing the cost of explanations across large-scale biological datasets. 121
Amirali Aghazadeh @amiralia.bsky.social · 27/08/2025Our new work on the utility of SAEs in low-N protein function prediction and design arxiv.org/abs/2508.185...arxiv.orgSparse Autoencoders for Low-$N$ Protein Function Prediction and DesignPredicting protein function from amino acid sequence remains a central challenge in data-scarce (low-$N$) regimes, limiting machine learning-guided protein design when only small amounts of assay-labe... 010
Amirali Aghazadeh @amiralia.bsky.social · 02/05/2025🚀🚀🚀 Super excited that our Agentic AI for Origins of Life is covered in a story in journal Nature. #ai #astroagents 010
Reposted by Amirali AghazadehItai Yanai @itaiyanai.bsky.social · 28/12/2024Research involves day science and night science, requiring you to become good at both. Day science proceeds in logical steps and specializes in hypothesis testing, but to generate new ideas we pop out to the creative night science world, where leaps among ideas are made possible. 1486
Amirali Aghazadeh @amiralia.bsky.social · 03/12/2024A great conclusion to my Generative and Geometric AI class at GT with several interesting projects and posters. #GenAI 090
Amirali Aghazadeh @amiralia.bsky.social · 26/11/2024Great read on ruggedness of protein fitness landscapes 080
Reposted by Amirali AghazadehSu-In Lee @suinlee.bsky.social · 24/11/2024Here’s the updated Computational Biology Starter Pack! Let me know if you'd like to be included. go.bsky.app/QVPoZXp 8017577
Reposted by Amirali AghazadehItai Yanai @itaiyanai.bsky.social · 19/11/2024I must admit that this annotated Nature abstract remains a useful recipe for constructing a summary paragraph. I show it to my students every time we get started. 1323742
Reposted by Amirali AghazadehSergiu P. Pasca @sergiuppasca.bsky.social · 17/11/2024Research funded by NIH generated $2.46 in economic activity for every $1 of funding in 2023 [a total of $92.9 billion] www.fiercebiotech.com/research/rep...fiercebiotech.comReport: Every dollar of NIH research funding doubles in economic returnsResearch funded by the National Institutes of Health (NIH) generated $2.46 in economic activity for every $1 of funding in 2023, a total of $92.9 billion, according to an 2245105
Reposted by Amirali AghazadehAltmetric @altmetric.com · 18/11/2024We strongly suggest that academic publishers and other platforms that host research rapidly implement a Share to Bluesky button for their articles. Here's how: docs.bsky.app/docs/advance... #AcademicSky #HigherEd #Altmetricsdocs.bsky.appAction Intent Links | BlueskyAuthors, websites, and apps can use action intent links to implement "Share on Bluesky" buttons, or similar in-app actions. Logged-in users will be directed to the corresponding action view in the Blu... 166113164572
Reposted by Amirali AghazadehBen Blaiszik @benblaiszik.bsky.social · 16/11/2024This pack is now up to 67 people, broadly in AI and advanced data for science. Follow along, and forward me others who should be there! 🦋🦋 go.bsky.app/JeFdryY 224515
Reposted by Amirali AghazadehFrances Arnold @francesarnold.bsky.social · 13/11/2024I'm looking forward to engaging on #chemsky. Missed #chemtwitter! 1627733