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Aditi Qamra

@aditiq.bsky.social
156 followers 541 following 13 posts

Computational biologist working on #digitalpathology and #doseoptimization in #clinicaltrials at Roche Canada 🧬 Opinions my own

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Reposted by Aditi Qamra
Sri Kosuri @srikosuri.bsky.social · 08/02/2025
It’s been a tough few weeks. My 10yo daughter was diagnosed with a very rare, aggressive cancer called interdigitating dendritic cell sarcoma (IDCS). I’m reaching out to identify clinicians/patients who have encountered pediatric IDCS or other (non-LCH) dendritic or histiocytic sarcomas cases.
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Reposted by Aditi Qamra
owl @owlposting1.bsky.social · 08/11/2024
Why Recursion Pharmaceuticals abandoned cell painting for brightfield imaging www.owlposting.com/p/why-recurs... After over a decade,Recursion Pharmaceuticals changed its primary assay. Why is that? I answer that question over 5.6k words (26 minutes to read) first journalism-y piece!
owlposting.com
Why Recursion Pharmaceuticals abandoned cell painting for brightfield imaging
5.7k words, 26 minutes reading time
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Aditi Qamra @aditiq.bsky.social · 04/01/2025
*Thread* The life science community frequently publishes new, often fundamental, insights in molecular and cellular biology. However, there does not exist a way to access this information in a summarized manner. We only access the information we need for our specific questions/use case. 1/yy
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Reposted by Aditi Qamra
Judith Kribelbauer @jk-swietek.bsky.social · 16/12/2024
Finally out! We present EXTRA-seq, a new EXTended Reporter Assay to quantify endogenous enhancer-promoter communication at kb scale! www.biorxiv.org/content/10.1... A 🧵about what it can do: #SynBio #DeepLearning #GeneRegulation
biorxiv.org
EXTRA-seq: a genome-integrated extended massively parallel reporter assay to quantify enhancer-promoter communication
Precise control of gene expression is essential for cellular function, but the mechanisms by which enhancers communicate with promoters to coordinate this process are not fully understood. While seque...
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Aditi Qamra @aditiq.bsky.social · 04/12/2024
Spatial imaging of transcripts without tissue dissociation www.biorxiv.org/content/10.1...
biorxiv.org
Sub-cellular Imaging of the Entire Protein-Coding Human Transcriptome (18933-plex) on FFPE Tissue Using Spatial Molecular Imaging
Single-cell RNA-seq revolutionized single-cell biology, by providing a complete whole transcriptome view of individual cells. Regrettably, this was accomplished only for individual, tissue-dissociated...
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Aditi Qamra @aditiq.bsky.social · 27/11/2024
Super cool - esp the breadth of markers being covered. I especially love fig 6 showing gene density enrichment in different groups of histone mods co-occurring with k4me3. I think this is going to be adopted real fast by discovery teams!
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Aditi Qamra @aditiq.bsky.social · 26/11/2024
Well articulated post on what if Bluesky goes awry one day. I like the idea of building real relationships that may originate here, outside of it. But, connections existing only here are no less real or meaningful.The rate at which the scientific community reconnected here is good evidence of that.
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Aditi Qamra @aditiq.bsky.social · 25/11/2024
Join in to meet people who like to focus on science and answer interesting questions in biology with computational tools
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Aditi Qamra @aditiq.bsky.social · 24/11/2024
changes in chromatin accessibility and loss of cell identity with age
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Aditi Qamra @aditiq.bsky.social · 23/11/2024
One of my dream for this year is to host a Jeffersonian dinner. I hope to reconnect with old connections and meet cool new ones to make this dream a reality.
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Reposted by Aditi Qamra
Stephen Turner @stephenturner.us · 22/11/2024
Like ‘old Twitter’: The scientific community finds a new home on Bluesky www.science.org/content/article/old… 🧬🖥️🧪
science.org
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Aditi Qamra @aditiq.bsky.social · 22/11/2024
Bluesky (so far) is a blast from the past when Twitter buzzed with good scientific conversations and scientists !
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Stephen Turner @stephenturner.us · 15/11/2024
Genomics, Evolution, and More @jlsteenwyk.bsky.social bsky.app/starter-pack...
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Jeffrey J. Gray @jeffreyjgray.bsky.social · 18/12/2023
Prepping for class this spring, this playlist of videos on diffusion models for proteins are great! Series is led by @maom.bsky.social and Nick Randolph of UNC. www.youtube.com/playlist?lis...
youtube.com
Molecular ML Reading Group
The Molecular ML Reading Group aims to explore foundational and recent applications of machine learning models to modeling molecular system.
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Reposted by Aditi Qamra
Sam Rodriques @sgrodriques.bsky.social · 20/11/2024
New on BioRxiv: We report a new, endogenous molecular clock in unmodified human cells and tissues. It is ticking away right now in almost every cell in your body. Paper here: www.biorxiv.org/content/10.1... 1/
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