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Aayush Grover

@aayushgrover.bsky.social

37 followers 69 following 3 posts

PhD Candidate. ML + Genomics

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Aayush Grover @aayushgrover.bsky.social · 23/05/2026

A massive thank you to all the brilliant co-authors and collaborators whose hard work and expertise brought this project across the finish line! 🙏 @valboeva.bsky.social Katya Ignacio @fabiantheis.bsky.social Eli Josephine Lin Till Simeon Minjia Jenny Marie-Claire (3/3)

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Aayush Grover @aayushgrover.bsky.social · 23/05/2026

In this version, we expanded benchmarks against more state-of-the-art models across various 3D genomic technologies. 📊 We also launched a UCSC Genome Browser track hub with precalculated predictions for 157 ENCODE datasets! 🧬 🌐 Hub: genome.ucsc.edu/cgi-bin/hgHu... (2/3)

x.com

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Aayush Grover @aayushgrover.bsky.social · 23/05/2026

Excited to share that UniversalEPI is officially published in @narjournal.bsky.social! 🚀 Check out the final paper and use the model here: 📄 Paper: academic.oup.com/nar/article/... 💻 Code: github.com/BoevaLab/Uni... (1/3) 🧵

academic.oup.com

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Reposted by Aayush Grover

Valentina Boeva @valboeva.bsky.social · 20/01/2026

Boeva Lab is #hiring postdocs and senior scientists in AI/ML for Cancer Biology! Check the offer and apply at: jobs.ethz.ch/job/view/JOP...

jobs.ethz.ch

Postdoctoral Researcher or Senior Scientist (AI × Biology)

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Reposted by Aayush Grover

UCSC Genome Browser @genomebrowser.bsky.social · 06/08/2025

We are pleased to announce our latest public hub, UniversalEPI ENCODE for hg38. It shows Hi-C interaction predictions based on ENCODE ATAC-seq data, generated by UniversalEPI: bit.ly/UniversalEPI_... Thanks to the Boeva Lab at ETH Zurich for creating this hub.

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Reposted by Aayush Grover

Valentina Boeva @valboeva.bsky.social · 11/06/2025

🚨 New preprint out! We studied deep learning models for high-resolution DNA accessibility prediction from DNA sequence! Key takeaway: ConvNeXt V2 blocks consistently boost accuracy. 📖 Preprint: biorxiv.org/content/10.1... 🔗Code: github.com/BoevaLab/ASAP 📦 pip install atac-asap

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Reposted by Aayush Grover

AI x Bio Discovery @aixbiobot.bsky.social · 03/03/2025

Evaluation of deep learning approaches for high-resolution chromatin accessibility prediction from genomic sequence [new] Deep learning for 4bp ATAC-seq prediction. ConvNeXt-based models (ConvNextDCNNs) robust for variant effects.

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Reposted by Aayush Grover

Valentina Boeva @valboeva.bsky.social · 26/11/2024

🚀 New preprint from our lab, Ekaterina Krymova, and @fabiantheis.bsky.social: UniversalEPI, an attention-based method to predict enhancer-promoter interactions from DNA sequence and ATAC-seq🌟 Read the full preprint: www.biorxiv.org/content/10.1... by @aayushgrover.bsky.social, L. Zhang & I.L. Ibarra

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Reposted by Aayush Grover

bioRxiv Genomics @biorxiv-genomic.bsky.social · 23/11/2024

UniversalEPI: Harnessing Attention Mechanisms to Decode Chromatin Interactions in Rare and Unexplored Cell Types www.biorxiv.org/content/10.1101/202…

biorxiv.org

UniversalEPI: Harnessing Attention Mechanisms to Decode Chromatin Interactions in Rare and Unexplored Cell Types https://www.biorxiv.org/content/10.1101/2024.11.22.624813v1

Chromatin interactions between cis-regulatory elements (CREs) and specific gene promoters offer insi

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