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Shades

@1001shady.bsky.social
49 followers 381 following 0 posts

Bioinformatics, RNA and Molecular Biology

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Djoser Genomics @djosergenomics.github.io · 16/09/2025
🥳 Happy 1st Birthday to Djoser Genomics! 🥳 From starting Djoser Genomics, Learning and Exploring Various Projects, to publishing my first preprint and creating the Bulk RNAseq Tutorial Codex! Thank you for being part of this journey so far. Here’s to Year Two. 🚀 #Bioinformatics #DjoserGenomics
djosergenomics.github.io
Djoser Genomics: Year One
Today marks Djoser Genomics’ 1st Birthday.
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Reposted by Shades
Ákos T Kovács @evolvedbiofilm.bsky.social · 15/06/2025
Origins and functions of microbiome rhythms -in @cp-cellhostmicrobe.bsky.social Review by Silke Kiessling, Shuaitong Liu, Dirk Haller, and @christophthaiss.bsky.social #chronobiology #circadianrhythm www.cell.com/cell-host-mi...
cell.com
Origins and functions of microbiome rhythms
In their review, Kiessling et al. summarize the features of the microbiota that undergo diurnal rhythms, their development, their impact on the biology of the host, and their relevance to human health...
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Cameron Thrash @jcamthrash.bsky.social · 17/06/2025
Our latest on the microbiology of SAR116, led by the indefatigable Jordan Coelho: Culture-supported ecophysiology of the SAR116 clade demonstrates metabolic and spatial niche partitioning academic.oup.com/ismej/advanc... #jcampubs
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Ryan Cook @ryancook94.bsky.social · 17/06/2025
New pre-print alert! 🚨🫁 COPD affects millions worldwide. While we know bacterial dysbiosis drives disease, the role of bacteriophages remains unexplored. We re-analysed 135 COPD metagenomes to characterise the lung virome for the first time 🫁 1/9 www.biorxiv.org/content/10.1...
biorxiv.org
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Ming Tommy Tang @tommytang.bsky.social · 24/03/2025
To up-level your R skills, It is time to write an R package 🧵
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Javier Santoyo @jsantoyo.bsky.social · 12/03/2025
PopGLen—A Snakemake pipeline for performing population genomic analyses using genotype likelihood-based methods. #Snakemake #PopulationGenomics #Bioinformatics 🧬 🖥️ academic.oup.com/bioinformati...
academic.oup.com
PopGLen—A Snakemake pipeline for performing population genomic analyses using genotype likelihood-based methods
AbstractSummary. PopGLen is a Snakemake workflow for performing population genomic analyses within a genotype-likelihood framework, integrating steps for r
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Manvendra Singh @manusingh.bsky.social · 17/01/2025
It is important that we take this poll www.nature.com/articles/d41...
nature.com
Has Bluesky replaced X for scientists? Take Nature’s poll
The research community has flocked to the social-media platform Bluesky. Tell us about your experience.
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Ming Tommy Tang @tommytang.bsky.social · 24/12/2024
🎯 Do you really understand p-values? The p-value histogram can reveal a LOT about your data. Let's break it down using real examples.👇
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Ming Tommy Tang @tommytang.bsky.social · 11/12/2024
chatomics! Bioinformatics is NOT Just Statistics! 🚨 The p-value is small in this example, but is it biologically meaningful?
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