Zampieri Lab @zampierilab.bsky.social · 08/09/2026We welcome a new lab member: Mario Raspanti. During his internship, Mario will be working on the implementation of 3D culture models as the foundation for all subsequent drug profiling and mechanistic analyses. 011
Zampieri Lab @zampierilab.bsky.social · 17/08/2026In today’s journal club, we discussed a paper in Nature entitled “Targeting de novo purine biosynthesis for tuberculosis treatment”. Great discussion on antimicrobial discovery approaches and drug characterisation. Link: www.nature.com/articles/s41...nature.comTargeting de novo purine biosynthesis for tuberculosis treatment - NatureThe validation of inhibitors targeting PurF, a novel drug target for tuberculosis drug discovery, is described. 021
Zampieri Lab @zampierilab.bsky.social · 03/07/2026Welcome back, Dana Reddmann! Previously doing her Master's Thesis with us, she is now on board as a PhD student in our lab. Dana will investigate how genetic and environmental factors contribute to the non-random spread of metastasising tumour cells. 010
Zampieri Lab @zampierilab.bsky.social · 03/07/2026Welcome, Federico Oreglia, as a new PhD student in our lab! Federico will be focussing on understanding how metabolic mechanisms influence the colonization potential of lung cancer cells. 010
Zampieri Lab @zampierilab.bsky.social · 04/06/2026Welcome, Tuomas Lindeman, as a new PhD student in our lab! Tuomas will be working fast targeted LC-MS/MS methods to expand our analytical portfolio for large clinical sample cohorts. 020
Zampieri Lab @zampierilab.bsky.social · 15/04/2026Welcome, Kevin Ritter, as a new PostDoc in our lab! He will be working on establishing in vitro frameworks to study metabolic reactions in defined biological extracts. With his background in organic chemistry, he will also reinforce our analytical expertise and help us set up our LC/MS workflow. 020
Zampieri Lab @zampierilab.bsky.social · 13/04/2026In today's journal club, we discussed a recent contribution from Michael Zimmermann's group @embl.org, Heidelberg, available on bioRxiv. Neat work illustrating the potential of individual members of the gut microbiome in drug-prodrug transformation impacting PK. www.biorxiv.org/content/10.6...biorxiv.org 020
Zampieri Lab @zampierilab.bsky.social · 25/03/2026We are looking for an enthusiastic intern (100%) to work on extending our high-throughput metabolic fingerprinting platform into 3D cancer models, such as spheroids and organoids. Please apply here: jobs.unibas.ch/offene-stell...jobs.unibas.chUniversität Basel: Internship Opportunity (100%) Zampieri LabThe Department of Biomedicine is a joint effort between the University of Basel and the University Hospitals Basel. It unites basic and clinical scientists to advance our understanding of health and d... 023
Zampieri Lab @zampierilab.bsky.social · 03/03/2026We discussed in our past journal club how Benztropine, a Parkinson’s drug, limits intracellular mycobacterium tuberculosis growth by modulating host histamine receptor H1, highlighting histamine signalling as a host-directed target. www.nature.com/articles/s44...nature.comThe Parkinson’s drug benztropine possesses histamine receptor 1-dependent host-directed antimicrobial activity against Mycobacterium tuberculosis - npj Antimicrobials and Resistancenpj Antimicrobials and Resistance - The Parkinson’s drug benztropine possesses histamine receptor 1-dependent host-directed antimicrobial activity against Mycobacterium tuberculosis 010
Zampieri Lab @zampierilab.bsky.social · 18/02/2026The Zampieri Lab at the University of Basel is recruiting a highly motivated PhD candidate to investigate how metabolic programs drive cancer metastasis. 📩 Only applications submitted through the official recruiting system of the University of Basel will be considered. jobs.unibas.ch/offene-stell...jobs.unibas.chUniversität Basel: PhD position in systems biology (Zampieri Lab)The Department of Biomedicine is a joint effort between the University of Basel and the University Hospitals Basel. It unites basic and clinical scientists to advance our understanding of health and d... 033
Zampieri Lab @zampierilab.bsky.social · 19/12/2025We have multiple open positions in our lab (www.zampierilab.org). Interested candidates should apply through the University of Basel’s official recruitment portal: www.unibas.ch/en/Working-a...zampierilab.orgHome - Zampieri LabBy studying fundamental mechanisms regulating short- and long-term metabolic adaptation to genetic and chemical perturbations, our lab aims at finding new and unconventional therapeutic strategies, fr... 048
Zampieri Lab @zampierilab.bsky.social · 19/12/2025🎉 We’re excited to announce that Laurentz has been awarded the Research Fund for Excellent Junior Researchers 2025 of the University of Basel. As part of this project, we are now looking for a motivated intern: jobs.unibas.ch/offene-stell...jobs.unibas.chUniversität Basel: Internship Opportunity (100%) Zampieri LabThe Department of Biomedicine is a joint effort between the University of Basel and the University Hospitals Basel. It unites basic and clinical scientists to advance our understanding of health and d... 002
Zampieri Lab @zampierilab.bsky.social · 12/12/2025After our hike up the hills in Pratteln, we had a lovely evening out at Wystübli Leuengrund, enjoying a lot of 🧀 fondue and local wine 🥂. 000
Zampieri Lab @zampierilab.bsky.social · 04/12/2025Impressive and interesting talks this week from our lab at the DBM monthly seminar series! Sebastian Bors and Tobias Fuhrer presented their projects and preliminary results, illustrating our lab's efforts to combine large screens with cell culture and high-throughput metabolomics. 030
Zampieri Lab @zampierilab.bsky.social · 21/10/2025In this week’s journal club, we discussed how sugar-sweetened beverages - America’s sweetest legacy - may drive colorectal cancer metastasis. Glucose + fructose relieve CRC cells from NAD+ limitation through SORD to boost metastasis. www.nature.com/articles/s42...nature.comFructose and glucose from sugary drinks enhance colorectal cancer metastasis via SORD - Nature MetabolismFeng, Luo and colleagues show that the combination of glucose and fructose, as found in sugar-sweetened beverages, promotes colorectal cancer metastasis through a mechanism involving sorbitol dehydrog... 040
Zampieri Lab @zampierilab.bsky.social · 29/09/2025In our recent journal club, we discussed an impressive paper published in Nature Microbiology titled “A shared alarmone–GTP switch controls persister formation in bacteria”. A comprehensive work on a (p)ppGpp–GTP antagonism pathway! Check it out: doi.org/10.1038/s415...doi.orgA shared alarmone–GTP switch controls persister formation in bacteria - Nature MicrobiologyAlarmone synthesis depletes GTP levels leading to a GTP-dependent switch that controls triggered, spontaneous and antibiotic-induced persister formation in Bacillus subtilis. 011
Zampieri Lab @zampierilab.bsky.social · 02/09/2025We are happy to welcome Charleen Braun, doing her Master’s degree in Bioanalytics at Coburg University of Applied Sciences with a specialization in Human Biology. 030
Zampieri Lab @zampierilab.bsky.social · 21/08/2025At our annual Summer Symposium, Laurentz Schuhknecht from our Lab received this year’s DBM Research Prize, for his groundbreaking work in drug discovery and systems pharmacology, published in Nature Biotechnology (Nature Portfolio) earlier this year. biomedizin.unibas.ch/en/communica...biomedizin.unibas.chDBM Research Prize Winner 2024 / 2025Congratulations to this year’s DBM research prize winner! As we enjoy our annual summer symposium, we would like to recognize Dr. Laurentz Schuhknecht from Mattia Zampieri’s Systems Pharmacology and B... 020
Zampieri Lab @zampierilab.bsky.social · 21/07/2025In our today's journal club, we discussed this impressive work by the Ralser Lab appearing this month in Nature: www.nature.com/articles/s41...nature.comThe role of metabolism in shaping enzyme structures over 400 million years - NatureBy combining structural biology and evolutionary genomics analyses, the evolution of enzymes over 400 million years is shown to be governed by catalytic function, metabolic network architecture, cost ... 042
Zampieri Lab @zampierilab.bsky.social · 01/07/2025In our recent journal club, we discussed insights obtained by in vivo NMR in the context of antibiotic resistance. Check it out! pubs.rsc.org/en/content/a...pubs.rsc.orgIn-cell NMR reveals metabolic adaptations in central carbon pathways driving antibiotic tolerance in Salmonella TyphimuriumAntibiotic tolerance presents a significant challenge in eradicating bacterial infections, as tolerant strains can survive antibiotic treatment, contributing to the recurrence of infections and the de... 041
Zampieri Lab @zampierilab.bsky.social · 12/06/2025We are happy to welcome Sandra Pflästerer, doing her Master’s degree in Molecular and Cellular Biology at Ludwig-Maximilian University. 020
Zampieri Lab @zampierilab.bsky.social · 27/05/2025In our recent journal club, we discussed a nice publication from Nature: “Macrophages recycle phagocytosed bacteria to fuel immunometabolic responses”. These exciting findings open the door to approaches that regulate immunometabolism during bacterial infections. www.nature.com/articles/s41...nature.comMacrophages recycle phagocytosed bacteria to fuel immunometabolic responses - NaturePhagocytosed bacteria can serve as an alternative nutrient source for macrophages, influencing their metabolic and immune responses through the recycling of microbial components, with the process regu... 010
Zampieri Lab @zampierilab.bsky.social · 19/05/2025We are looking for highly motivated Master and Bachelor Students to work on computational projects to better understand how bacteria and cancer cells metabolically adapt to chemical perturbations. Write us and find out how to conduct your semester or master project in our lab! www.zampierilab.orgzampierilab.orgHome - Zampieri LabBy studying fundamental mechanisms regulating short- and long-term metabolic adaptation to genetic and chemical perturbations, our lab aims at finding new and unconventional therapeutic strategies, fr... 010
Zampieri Lab @zampierilab.bsky.social · 13/05/2025We are happy to share our new work on glutamine addiction in cancer cells. By characterizing the exchange rate and dynamic metabolite response to extracellular glutamine deprivation, we shed light on long standing questions about glutamine addiction. www.biorxiv.org/content/10.1...biorxiv.orgThe glutamine-aspartate metabolic tradeoff between fast growth and metabolic flexibility.Cancer cells develop unique addictions to nutrients offering attractive opportunities for clinical intervention. However, how cancer cells orchestrate and benefit from metabolic rewiring remain fundam... 175
Zampieri Lab @zampierilab.bsky.social · 07/04/2025A warm welcome to Dana Reddmann, Biochemistry Master's student at Freie Universität Berlin, starting her Master Thesis in our lab! 020
Zampieri Lab @zampierilab.bsky.social · 25/03/2025We are happy to welcome Elena Pintea, MSc-Student in the Drug Sciences program at the University of Basel. 010
Zampieri Lab @zampierilab.bsky.social · 10/03/2025Our recent publication has been featured in The Scientist! Thanks to Sneha Khedkar for such a clear and exciting presentation of our research. www.the-scientist.com/same-drug-ne...the-scientist.comSame Drug, New Actions: Metabolomics Reveals Hidden Drug EffectsStudying drug-induced metabolic changes with high-throughput systems shed light on drug modes of action, providing an efficient drug discovery platform. 010
Zampieri Lab @zampierilab.bsky.social · 03/03/2025In today's journal club, we discussed the work by Sunil Guharajan, Vinuselvi Parisutham and Robert C. Brewster from @brewsterlab.bsky.social, which was recently published in Nucleic Acids Research. doi.org/10.1093/nar/...doi.orgA systematic survey of TF function in E. coli suggests RNAP stabilization is a prevalent strategy for both repressors and activatorsAbstract. Transcription factors (TFs) are often classified as activators or repressors, yet these context-dependent labels are inadequate to predict quanti 120
Zampieri Lab @zampierilab.bsky.social · 03/03/2025A warm welcome to Thomas Gosselin-Monplaisir, visiting PhD-Student from Toulouse Biotechnology Institute. 121
Zampieri Lab @zampierilab.bsky.social · 12/02/2025We are seeking for a talented semester or master student for a computational project on antimicrobial effects of drugs. Check it out! www.zampierilab.org/join-us/zampierilab.orgJoin us - Zampieri LabInterested to join our lab? Feel free to inquire about open positions or semester/master projects in our lab. We are always looking for highly motivated Master and Bachelor Students. We continuously o... 032
Zampieri Lab @zampierilab.bsky.social · 05/02/2025Our work was featured in chemistryworld. Fantastic pitch of our research by Anthony King. www.chemistryworld.com/news/mapping...chemistryworld.comMapping metabolite disturbances by drugsHigh-throughput metabolomic profiling gives insight into unpredictable drug effects 031
Zampieri Lab @zampierilab.bsky.social · 03/02/2025Today in our journal club: impressive work by the group of S.M. Fendt KU Leuven, published in Nature: www.nature.com/articles/s41... Here they present how elevated pulmonary aspartate levels trigger a translational program that boosts the aggressiveness of lung metastases.nature.comAspartate signalling drives lung metastasis via alternative translation - NatureAspartate in the tumour environment activates the N-methyl-d-aspartate receptor in cancer cells to induce cellular programmes that increase the aggressiveness of metastasis. 042
Zampieri Lab @zampierilab.bsky.social · 28/01/2025We are very excited to share that the recent research from our lab has been published in Nature Biotechnology! Thanks to our lab members and our collaborators for contributing to this project and especially to Laurentz for driving this exciting research! www.nature.com/articles/s41...nature.comA human metabolic map of pharmacological perturbations reveals drug modes of action - Nature BiotechnologyMapping the metabolic effects of drugs helps define their mode of action. 1187
Zampieri Lab @zampierilab.bsky.social · 28/11/2024Today in our journal club: impressive work by Tofani et al. in Cell Metabolism. www.cell.com/cell-metabol...cell.comGut microbiota regulates stress responsivity via the circadian systemGut microbes are known to modulate stress responsivity and behavior. Tofani et al. demonstrate that such modulations occur via the circadian system. The oscillations in gut microbiota composition regu... 082
Zampieri Lab @zampierilab.bsky.social · 28/11/2024This is our new lab profile on @bsky.app ! Stay tuned for regular news and updates from our lab! 011