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Xinming Tu

@xinmingtu.bsky.social
36 followers 24 following 0 posts

PhD student @uwcse; ML&CompGenomics&GeneRegulation; Bio&CS undergrad @PKU1898; Intern@Yale, Microsoft Research Asia, Genentech

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Reposted by Xinming Tu
Han Yuan @hy395.bsky.social · 02/06/2025
1/ DNA sequence models like Borzoi predict gene expression and variant effects across tissues — but how can someone adapt the model to a custom experiment? @drkbio.bsky.social, Johannes Linder and I propose a solution via parameter-efficient fine-tuning (PEFT). www.biorxiv.org/content/10.1...
biorxiv.org
Parameter-Efficient Fine-Tuning of a Supervised Regulatory Sequence Model
DNA sequence deep learning models accurately predict epigenetic and transcriptional profiles, enabling analysis of gene regulation and genetic variant effects. While large-scale training models like E...
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Reposted by Xinming Tu
Gherman Novakovsky @gnovakovsky.bsky.social · 30/05/2025
Want to learn more about PromoterAI? 📄 Read the paper: science.org/doi/10.1126/... 💻 Explore the code & precomputed scores: github.com/Illumina/Pro.... (14/)
science.org
Predicting expression-altering promoter mutations with deep learning
Only a minority of patients with rare genetic diseases are currently diagnosed by exome sequencing, suggesting that additional unrecognized pathogenic variants may reside in non-coding sequence. Here,...
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