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Han Yuan

@hy395.bsky.social
93 followers 113 following 11 posts

ML scientist @Kelley lab @Calico. Previously @Leslie lab @MSKCC @Weill Cornell.

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Han Yuan @hy395.bsky.social · 02/06/2025
1/ DNA sequence models like Borzoi predict gene expression and variant effects across tissues — but how can someone adapt the model to a custom experiment? @drkbio.bsky.social, Johannes Linder and I propose a solution via parameter-efficient fine-tuning (PEFT). www.biorxiv.org/content/10.1...
biorxiv.org
Parameter-Efficient Fine-Tuning of a Supervised Regulatory Sequence Model
DNA sequence deep learning models accurately predict epigenetic and transcriptional profiles, enabling analysis of gene regulation and genetic variant effects. While large-scale training models like E...
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Reposted by Han Yuan
David Kelley @drkbio.bsky.social · 20/04/2025
Working with a great team to organize @keystonesymposia.bsky.social AI in MolecularBiology, this September! We aimed for a wide range of biological topics, and emphasized speakers who blend sophisticated machine learning with compelling biological questions and analysis.
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Reposted by Han Yuan
Anya Korsakova @anyakors.bsky.social · 16/04/2025
⚡️ Our latest preprint is on bioRxiv! Shift augmentation improves DNA convolutional neural network indel effect predictions www.biorxiv.org/content/10.1...
biorxiv.org
Shift augmentation improves DNA convolutional neural network indel effect predictions
Determining genetic variant effects on molecular phenotypes like gene expression is a task of paramount importance to medical genetics. DNA convolutional neural networks (CNNs) attain state-of-the-art...
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