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weecology

@weecology.bsky.social
2.6K followers 1.8K following 42 posts

Interdisciplinary ecology and environmental data science research group run by bsky.app/profile/ethan.weecology.org & bsky.app/profile/skmorgane.bsky.soc…. "They could both be wrong, but in different ways." weecology.org

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weecology @weecology.bsky.social · 23/09/2026
We just released annotated drone imagery for over 50,000 individual birds of 6 widely distributed species. This #OpenData includes bounding boxes and species identifications and is designed for help (pre)train computer vision models for individual bird detection and classification. 🌎🧪
doi.org
EverWatch airborne bird imagery dataset for detection and classification of Everglades wading birds
Large-scale monitoring of populations and communities using airborne remote sensing is increasingly central to a broad range of research, management, and decision-making efforts. Performing this work...
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Shelly Gaynor @shellygaynor.bsky.social · 21/05/2026
We updated the Biology PhD Stipend site so we didn't have to pay to host it anymore, the new URL is mlgaynor.com/BiologyPhDSt...
mlgaynor.com
Biology PhD Stipends
Biology Ph.D. stipend database with live summaries from the shared Google Sheet.
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weecology @weecology.bsky.social · 21/05/2026
weecology runs on @sagenatural.bsky.social
Picture of two shelves filled with Desert Sage Natural tea in large bags and tins
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Jeffrey Perkel (he/him) @jperkel.bsky.social · 20/04/2026
Commercial software can contain 50+ errors per 1000 lines of code; scientific software, written by relative newbies, is more error prone. I spoke to @tracykteal.bsky.social @amyko.phd @weecology.bsky.social & more to learn best debugging practices @nature.com 🧑‍💻 🐜 ❌ 🧪 www.nature.com/articles/d41...
nature.com
Got bugs? Here’s how to catch the errors in your scientific software
Computer scientists share their advice for ensuring that your scientific software does what it’s supposed to do.
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Depeche Median @depechemedian.bsky.social · 20/04/2026
If you live in Georgia, remember to double-check your voter registration. Today's the last day to register for the May 19 elections because GA hates voters. Also, GA has open primaries, so you can vote in either party's primary, probably for the last time before the legislature puts a stop to it.
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Sadie J. Ryan (she/her) @sjryan3.bsky.social · 20/04/2026
Congratulations to Neha Senthilkumar on winning the 2nd place ($$$) undergraduate poster prize at @epi.ufl.edu Research Day!! Super proud of your passionate energy for this project and looking forward to next steps of greatness with you!!
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weecology @weecology.bsky.social · 15/04/2026
We're looking for a postdoc to join our group working on long-term dynamics of wading bird colonies in the Everglades with a focus on either cross-scale drivers of wading bird breeding activity and success or automated drone-based monitoring of nest success using aerial imagery and computer vision 🌎
jabberwocky.weecology.org
Join Our Everglades Wading Bird Research as a Postdoc
Join our Everglades Wading Bird project as a postdoc researcher! Explore wading bird breeding, nest success, and drone monitoring opportunities.
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weecology @weecology.bsky.social · 15/04/2026
Spring in the desert
Picture of a javelina surrounded by yellow poppies from a trail camera at the long-term Portal LTREB.
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weecology @weecology.bsky.social · 26/01/2026
New update on the regime shift at our long-term study site from @skmorgane.bsky.social "...our kangaroo rats losing their battle with the forces of dryness, but if you squint real hard you might be able to see them pushing themselves back up. Maybe." doi.org/10.59350/4y0...
doi.org
Portal Regime Shift Update: How bad can it get?
Well, 2025 was a wild ride. The lack of updates on the potential regime shift at Portal isn’t because it fizzled, but because [wave hands at the world]. And Portal was not immune to [waves hands at…
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Leslie Rissler @ljrissler.bsky.social · 25/04/2025
Why is the U.S. National Science Foundation important? Please share your stories! Use the hashtags #WithoutNSF or #WithoutScience
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weecology @weecology.bsky.social · 26/04/2025
#WithoutNSF we wouldn't have been able to train folks in the skills they need for their jobs at: College of Charleston Denison University Instacart Institute for Ecosystems Studies National Ecological Observatory Network Netflix NIH Oregon Department of Human Services ...
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weecology @weecology.bsky.social · 12/03/2025
New update on the regime shift at our long-term study site. With a little levity thanks to @skmorgane.bsky.social. "No species was safe, and populations began to drop like characters in a George R.R. Martin book. Only kangaroo rats... were making a valiant stand against the forces of dryness" 🌎 🧪
doi.org
Regime Shift: A Winter of Grim
Every episode in a tv series starts with a recap. So… Previously, on Portal: the Regime Shift — In fall of 2023, one of the ruling families of Portal — the Desert Pocket Mouse (Ch…
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Nick Clark 💹 @njclark.bsky.social · 19/02/2025
One of my favourite papers I've been involved in was just published in @peerj.bsky.social. Working with a wonderful team of ecologists at @weecology.bsky.social, we used multivariate ecological forecasts to understand the population dynamics of desert rodents peerj.com/articles/189... 🌎 #rstats
peerj.com
Beyond single-species models: leveraging multispecies forecasts to navigate the dynamics of ecological predictability
Background Forecasting the responses of natural populations to environmental change is a key priority in the management of ecological systems. This is challenging because the dynamics of multi-species...
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weecology @weecology.bsky.social · 30/01/2025
Excited to see @vectorbyte.bsky.social joining Bluesky www.vectorbyte.org
vectorbyte.org
VectorByte (VecTraits and VecDyn databases)
The VectorByte initiative is establishing a global open access data platform to study disease vectors. This project will not only serve as a hub for biological trait and abundance data for human and n...
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weecology @weecology.bsky.social · 14/11/2024
Interested in using computer vision to help understand, manage, and conserve nature? We looking for someone to join our team to work on models, software, and community outreach in projects using airborne imagery to monitor and understand nature at scale.
jabberwocky.weecology.org
We’re hiring a computer vision developer!
Interested in using computer vision to help understand, manage, and conserve nature? We hiring for a new position to join our team working on models, software, and community outreach in our existing projects using airborne imagery to monitor and understand natural systems at large scales.
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Ethan White @ethanwhite.weecology.org · 08/11/2024
New paper on "Near-term ecological forecasting for climate change action" by a group of folks from the Ecological Forecasting Initiative led by Mike Dietze w/me @skmorgane.bsky.social @cboettig.bsky.social @careylab.bsky.social @waterpotential.bsky.social and lots of other (non-Bluesky) folks 🌎🧪
doi.org
Near-term ecological forecasting for climate change action - Nature Climate Change
In this Perspective, the authors discuss the current status of ecological forecasting research, its role in helping to address the climate and biodiversity crises facing society and potential future d...
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iBartomeus @ibartomeus.bsky.social · 19/10/2024
I tried to build a starter pack for researchers in ecology sensu lato. Who am I missing? go.bsky.app/2MdGeqi I can add more people and spread it around.
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Sadie J. Ryan (she/her) @sjryan3.bsky.social · 07/11/2024
Really pleased to share the preprint of Ms Simrik Bhandari's primary thesis paper examining spatial patterns in Nepal's record outbreaks of dengue in 2022 and 2023. (1/n)
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Andrew Mercer @awmercer.bsky.social · 23/10/2024
If I had known a career in “weecology” was an option, I might have made some very different decisions.
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srsupp.bsky.social @srsupp.bsky.social · 02/10/2024
There are still 5 days left to apply to join me teaching interdisciplinary data analytics at Denison University! It's an exciting place w/ great resources. PhD in any field + ability to teach using R and/or Python; @ Assistant or Associate Professor rank, apply by Oct 7 apply.interfolio.com/151230
apply.interfolio.com
Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
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weecology @weecology.bsky.social · 02/10/2024
We're looking for a PhD student to join us starting Fall 2025 to work on our long-term study (almost 50 years!) of small mammals and plants to understand and predict changes in species abundances and biodiversity in response to changing climate and biotic conditions. 🧪🌎
jabberwocky.weecology.org
PhD Student Opening: Small Mammal Community Dynamics
Interested in understanding how ecological systems change through time? Morgan Ernest’s Lab at the University of Florida has an opening for a PhD student to start Fall 2025. The new student will wo…
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Ethan White @ethanwhite.weecology.org · 29/08/2024
I'm looking for a PhD student to join @weecology.bsky.social to study ecological forecasting using wading birds in the Everglades. The position will be focused on data science, time-series modeling, and forecasting. There will also be opportunities for field, drone, and computer vision work. 🌎
jabberwocky.weecology.org
PhD Student Position In Ecological Forecasting Of Everglades Wading Birds
Ethan White’s lab at the University of Florida has an opening for a PhD student starting in Fall 2025 to study ecological forecasting of wading birds in the Everglades.
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weecology @weecology.bsky.social · 29/08/2024
We're looking for a new #PhD student to join weecology! Come learn and work with us studying ecological forecasting and dynamics with wading birds in the Everglades.
jabberwocky.weecology.org
PhD Student Position In Ecological Forecasting Of Everglades Wading Birds
Ethan White’s lab at the University of Florida has an opening for a PhD student starting in Fall 2025 to study ecological forecasting of wading birds in the Everglades.
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weecology @weecology.bsky.social · 30/07/2024
New preprint on our work monitoring Everglades wading birds in near real-time using drones, computer vision models, & automated workflows. 🧪🌎 Preprint: doi.org/10.1101/2024... #rstats data viz website: everwatch.weecology.org Open data: zenodo.org/doi/10.5281/... Code: github.com/weecology/ev...
doi.org
Near real-time monitoring of long legged wading birds using uncrewed aircraft systems and computer vision
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
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Ethan White @ethanwhite.weecology.org · 29/07/2024
We (@weecology.bsky.social) monitor Everglades wading birds using drones & turn this imagery into data in near real-time using computer vision models to detect birds & automated workflows to immediately process new imagery. 🧪🌎 Preprint: doi.org/10.1101/2024... Blog post doi.org/10.59350/b5b...
Screenshot of https://everwatch.weecology.org. Map showing the general location of the colony, CypressCity. Time-series showing the total counts of all birds in that colony weekly during the February-April for 2000-2023. A zoomed in image showing individual bird detections on top of the imagery.One-to-one plot showing counts of birds from the bird detector on the x axis, human counts on the y axis, and a tight clustering of points along the one-to-one line.Diagram of workflow showing: 1) imagery moving from drone to laptop and then syncing to a workstation; 2)  ground control point alignment; 3) combine individual drone images into a single orthomosaic; 4) syncing the orthomosaic to the HPC; 5) cropping the ortho into pieces for the model; 6) DeepForest model prediction; 7) output the predictions; archive the predictions and transfer them to a web server for visualization. It also shows: 1) orthomosaic converted to mbtiles and geospatial raster data; 2) syncing this data to a tiling service in the cloud; 3) that data being pull to the data visualization platform.
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Leslie Rissler @ljrissler.bsky.social · 23/07/2024
New NSF Postdoc Fellowship track. “…will support Fellows that leverage large data, such as those from the National Ecological Observation Network (NEON), and innovative approaches, including Artificial Intelligence (AI), Machine Learning (ML), and modeling…” www.nsf.gov/pubs/2024/ns...
nsf.gov
Dear Colleague Letter: Announcing a New Track in the Postdoctoral Research Fellowships in Biology (PRFB) Program: Biological Research, Understanding and Solutions for a Resilient Planet (nsf24108) | N...
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Timothée Poisot @ctrlalttim.com · 24/07/2024
🧪 Very cool results on food webs by lab members: [1] Banville et al.: what does it mean to use probabilities to represent interactions? [2] @gabdans.bsky.social et al.: local reconstruction of regional food webs [1] ecoevorxiv.org/repository/v... [2] royalsocietypublishing.org/doi/10.1098/...
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Dr. Kat Napaaqtuk❄️ @napaaqtuk.bsky.social · 24/07/2024
#BeneficialMicrobes day 3 starts with Elizabeth Mallott discussing human gut microbiome. Mallot has a background in sociology and looks outside of race/ethnicity for variables that alter the gut microbiome. Love this shift in microbiome research. Cites this paper: journals.asm.org/doi/full/10....
journals.asm.org
Chasing Ghosts: Race, Racism, and the Future of Microbiome Research | mSystems
In this article, we argue that a careful examination of human microbiome science’s relationship with race and racism is necessary to foster equitable social and ecological relations in the field. We p...
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Ethan White @ethanwhite.weecology.org · 22/07/2024
We published a dataset of canopy tree maps for 100 million trees in the National Ecological Observatory Network with info on location, species identify, & size 🧪🌍 Paper: doi.org/10.1371/jour... Interactive DataVis: visualize.idtrees.org Data: doi.org/10.5281/zeno... Blog: doi.org/10.59350/zb2...
doi.org
New dataset on 100 million canopy trees across the National Ecological Observatory Network
New dataset of canopy tree maps for 100 million trees in the National Ecological Observatory Network with information on location, species identify, and size. Paper: Interactive web visualization: …
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weecology @weecology.bsky.social · 22/07/2024
We made maps of 100 million trees in the National Ecological Observatory Network with info on location, species identify, and size 🧪🌎 Paper: doi.org/10.1371/jour... Interactive #DataViz: visualize.idtrees.org #OpenData on Zenodo: doi.org/10.5281/zeno... Blog Post: doi.org/10.59350/zb2...
doi.org
Individual canopy tree species maps for the National Ecological Observatory Network
Detailed maps of tree species can be used for forest analysis, biogeographic research and ecosystem monitoring. This study provides individual tree species maps for 24 sites in the United States Natio...
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weecology @weecology.bsky.social · 08/07/2024
Our @skmorgane.bsky.social has been chronically a potentially rapid shift in species composition happening at one of our long-term study sites. Check out her most recent update 🌎🧪
jabberwocky.weecology.org
Regime shift cometh? Saga Continues
Welcome back to our next installment of: what the heck is happening with the Portal rodents? For those just tuning in, I might recommend reading our first two installments: Regime Shift Cometh? and…
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Morgan Ernest @skmorgane.bsky.social · 08/07/2024
Latest update on the rodent community dynamics at Portal - is a regime shift still in the cards? Read and find out! jabberwocky.weecology.org/2024/07/08/r...
jabberwocky.weecology.org
Regime shift cometh? Saga Continues
Welcome back to our next installment of: what the heck is happening with the Portal rodents? For those just tuning in, I might recommend reading our first two installments: Regime Shift Cometh? and…
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weecology @weecology.bsky.social · 13/05/2024
We've been monitoring what appears to be the start of an active regime shift at one of our long-term study sites. The ecosystem is likely rapidly transitioning from a decade long stable state to a new state & we can watch the transition happen. We can do this thanks to... 🌎🧪
jabberwocky.weecology.org
Regime shift still cometh?
Back when I had optimistic views of my time, I vowed to do more blogging this year. Sadly, life had other plans. But I return with an update to an earlier post on the Portal rodent community. To re…
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weecology @weecology.bsky.social · 05/02/2024
Has anyone we know gone through the NSF LTREB renewal process (the renewal proposal for the 2nd 5 years of funding)? We're starting work on the renewal for the Portal Project (portal.weecology.org) and are hoping to see an example of what this looks like since it's our first time doing one. 🌍
portal.weecology.org
Portal Project
Long-term ecological research
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itati santamaria de Collins @itativcs.latinsky.app · 29/01/2024
Howdy all! Chelsea only needs 2, 193$ to pay down her tuition! She needs to make this payment ASAP to be able to graduate with her MSc this semester! Please donate, share, and RT! #MutualAid #gofundme gofund.me/5ccde1af
gofund.me
Help Chelsea finish her degree!, organised by Tayler SantaMaria
Hello! I'm Toby, but many of you know me as @itatiVCS on Twitter. I'm asking for he… Tayler SantaMaria needs your support for Help Chelsea finish her degree!
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Lars Brudvig @lars-brudvig.bsky.social · 19/01/2024
REU openings with the SRS Corridor Project to study fragmentation effects on plants and insects! www.brudviglab.com/post/reu-ope...
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Volker Rudolf @volkerrudolf.bsky.social · 22/01/2024
This has been one of my favorite conferences in recent years. Great interactions, great science, great people.
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weecology @weecology.bsky.social · 22/01/2024
If you're interested in big ecological datasets, natural history, and predictive cross-scale ecology (like we are) then you should check out the upcoming Gordon Research Conference and Seminar (a student/postdoc only conference that occurs first). Read about why it's been great for weecologists 🧪🌎
jabberwocky.weecology.org
Gordon Research Conference & Student/Postdoc Conference on Unifying Ecology Across Scales
If you’re interested in big ecological datasets, natural history, ecological forecasting, and predictive cross-scale ecology (like we are) then you should check out the upcoming Gordon Resear…
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weecology @weecology.bsky.social · 18/01/2024
@mabakerusu.bsky.social 👋🏻
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Guillaume Lobet @guillaumelobet.bsky.social · 18/01/2024
note to publishers : if I have to find how to log in into your journal platform just to decline a review invitation, do not be surprise if you do not get my answer...
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Carl Boettiger @cboettig.bsky.social · 17/01/2024
Exciting opportunity for multiple postdoctoral scholars to join our growing UC Berkeley team at DSE! Focus areas in Climate resilience in our National Parks, Indigenous Environmental Stewardship, Applied hydrology, + Tools for Working Lands. ~ $87K - $95K + plus benefits dse.berkeley.edu/postdocs
dse.berkeley.edu
Postdoctoral Scholars - Environmental Science / Data Science | The Eric and Wendy Schmidt Center for...
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weecology @weecology.bsky.social · 16/01/2024
As part of The Carpentries 25th Anniversary @ethan.weecology.org writes about the impact the organization has had an him "The Carpentries has changed every aspect of my professional life... [it] changed how I approach scientific research, how I teach, and how I collaborate and organize."
jabberwocky.weecology.org
How has The Carpentries made an impact (on me)
What impact did The Carpentries have on me? As a learner, it taught me most of my essential day-to-day computational tools. As an Instructor, it changed how I teach, allowing me to reach more stude…
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Timothée Poisot @ctrlalttim.com · 11/01/2024
As @weecology.bsky.social said, 2024 is the year the ecology blogosphere makes its comeback. I agree! I will be starting a newsletter to discuss cool ecology papers, time management techniques for anxious academics, and teaching. First post next Monday, and then weekly. Feel free to sign up! 🧪
buttondown.email
Ctrl. Alt. Tim
A weekly newsletter about ecology, time management, sticky notes, and teaching, by Timothée Poisot. Vol. 0 on Jan 15, 2024. CC-BY 4.0
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weecology @weecology.bsky.social · 09/01/2024
Regime Shift Cometh? We've been studying how rodent communities change through time in the Arizona desert for 40 years. About once a decade we see a rapid change. Is the next one about to happen? @skmorgane thinks it might be! 🌍🧪 doi.org/10.59350/7bk...
doi.org
Regime Shift Cometh?
We’ve been studying how rodents communities change through time in the Arizona desert for 40 years. About once a decade we see a rapid change. Is the next one about to happen? It might be!
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Morgan Ernest @skmorgane.bsky.social · 08/01/2024
I finally have energy for more than just surviving so @ethan.weecology.org and I are resurrecting Weecology's blog: Jabberwocky Ecology. Can't speak for Ethan's planned topics but stay tuned for a rodent's eye view of biodiversity change, and a bird's eye view of monitoring wildlife w/ drones
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Terry McGlynn @hormiga.bsky.social · 08/01/2024
We've got the ecology blogosphere back?! Welcome back to @weecology.bsky.social and Dynamic Ecology!
open.substack.com
Ecology blogging is growing again!
Two blogs that had previously retired just announced that they're back.
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weecology @weecology.bsky.social · 08/01/2024
Return to (and of?) the ecology blogosphere doi.org/10.59350/ftf... 🧪🌍
doi.org
Return to (and of?) the ecology blogosphere
We started Jabberwocky Ecology back in 2008 when blogs were becoming the dominant medium for informal (online) academic discussions. About the same time a handful of other ecology blogs got going a…
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weecology @weecology.bsky.social · 21/12/2023
New paper: "Data science competition for cross-site individual tree species identification from airborne remote sensing data" TLDR; Predicting common species w/local training data works; rarer species are difficult; same species w/o local training data are harder. doi.org/10.7717/peer...
doi.org
Data science competition for cross-site individual tree species identification from airborne remote ...
Data on individual tree crowns from remote sensing have the potential to advance forest ecology by providing information about forest composition and structure with a continuous spatial coverage over ...
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weecology @weecology.bsky.social · 13/11/2023
New on Jabberwocky Ecology (our blog) - We’re excited to announce the initial release of crown maps for 100 million trees in the National Ecological Observatory Network (NEON) with information on location, species identify, size, and alive/dead status. doi.org/10.59350/6vj... 🧪🌎
Pictures of the BART NEON site with tree crowns indicated by boxes of different colors for different species at three scales: 1) The full site and surrounding region; 2) 500 m x 250 m; and 3) 90 m x 150m. The largest scale exhibits clusters and gradients of different colors. At the middle scale small boxes can be seen clustered by color. At the finest scales tree crowns can be seen surrounded by boxes of different colors.
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