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Plant-Microbe Interactions

@utrechtpmi.bsky.social
1K followers 251 following 20 posts

@Utrecht University www.uu.nl/en/research/plant-microbe…

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Reposted by Plant-Microbe Interactions
Roeland Berendsen @rlberendsen.bsky.social · 24/02/2026
How are we to argue with the likes of @PlantEvolution? 🌱 “Fantastic and important study” — we’ll happily take that 😊 The formatted PDF of our paper is now online! academic.oup.com/ismej/articl...
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Roeland Berendsen @rlberendsen.bsky.social · 23/11/2025
This nicely builds on our earlier Current Biology work with @keyu01.bsky.social @utrechtpmi.bsky.social @carahaney.bsky.social @cornepieterse.bsky.social @gstringlis.bsky.social , where we showed how acidification of the plant environment supports colonization by beneficial Pseudomonas.
cell.com
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Roeland Berendsen @rlberendsen.bsky.social · 23/11/2025
🎉 Check out the latest from Qin Gu’s team at Nanjing Agricultural University: “Keystone Pseudomonas species in the wheat phyllosphere” (Cell Host & Microbe) 👉 www.cell.com/cell-host-mi...
cell.com
Keystone Pseudomonas species in the wheat phyllosphere microbiome mitigate Fusarium head blight by altering host pH
Fusarium graminearum (F. graminearum) pathogen induces wheat phyllosphere alkalinization, promoting the development of Fusarium head blight (FHB). Xu et al. show that host-acidifying Pseudomonas, sele...
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Roeland Berendsen @rlberendsen.bsky.social · 18/06/2025
Really nice work from @jellespooren.bsky.social showing that disease-suppressive soils might sometimes be generated in the phyllosphere. Turning the concept of soilborne legacies upside down 🌱🦠 With @cornepieterse.bsky.social @svanwees.bsky.social and others @utrechtpmi.bsky.social
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Roeland Berendsen @rlberendsen.bsky.social · 06/03/2025
@y-song.bsky.social doing a great job at explaining the importance of the potato microbiome at the @utrechtuniversity.bsky.social microbiome day! Hoping the medical and veterinary microbiome scientists in the audience enjoy the change in perspective.
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Plant-Microbe Interactions @utrechtpmi.bsky.social · 04/03/2025
🔬 Exciting #JournalClub in our group today by @nielsaerts.bsky.social! We discussed the immense and multilayered complexity of hormonal cross-regulation in plant immunity, based on this preprint: www.biorxiv.org/content/10.1.... 🌿🧬A must-read for those fascinated by plant defense and signaling!
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Tatsuya Nobori @tatsuyanobori.bsky.social · 19/02/2025
Conserved immunomodulation and variation in host association by Xanthomonadales commensals in Arabidopsis root microbiota www.nature.com/articles/s41...
nature.com
Conserved immunomodulation and variation in host association by Xanthomonadales commensals in Arabidopsis root microbiota - Nature Plants
The authors show that immunosuppression is highly conserved in the bacterial order Xanthomonadales. This feature, which preceded their specialization as host-adapted pathogens, probably contributes to...
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Plant-Microbe Interactions @utrechtpmi.bsky.social · 18/02/2025
Interesting journal club by @mpapadopoulou.bsky.social about www.nature.com/articles/s41.... Evidence for the promotion of specific microbial ecological clusters to increase soybean plant fitness in response to nutrient deficiency. Also interesting for microbiomes4soy.eu
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Roeland Berendsen @rlberendsen.bsky.social · 17/02/2025
We continue to build the Plant Microbiome Starter Pack. Please let us know if you or others are missing! go.bsky.app/QG4wCyf
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Plant-Microbe Interactions @utrechtpmi.bsky.social · 12/02/2025
Great talk by Heribert Hert on microbiomes in relation to drought resistance, regreening strategies and the orphan crop Fonio microbiomejournal.biomedcentral.com/articles/10....
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Ronnie de Jonge @dejongepmi.bsky.social · 07/02/2025
And so it was! Great defense, great thesis. #ProudSupervisor
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Roeland Berendsen @rlberendsen.bsky.social · 05/02/2025
Symposium in celebration of the PhD defense of @gijsselten.bsky.social is of course kicked off by @gijsselten.bsky.social following intro by @dejongepmi.bsky.social!
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Roeland Berendsen @rlberendsen.bsky.social · 05/02/2025
@gijsselten.bsky.social demonstrated that plants select bacterial functions using a SuperSynCom (1000 strains)
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Roeland Berendsen @rlberendsen.bsky.social · 05/02/2025
Next up: Simon Radutoiu about the role of LysM receptors in symbiosis between legumes and rhizobia
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Roeland Berendsen @rlberendsen.bsky.social · 05/02/2025
Maria Suarez Diez (WUR) about constraint-based modelling of SynComs: already complex with a SynCom of three!
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Roeland Berendsen @rlberendsen.bsky.social · 05/02/2025
Great line up before the PhD defense of @gijsselten.bsky.social: now Ruben Garrido-Oter on experimental evolution on the plant
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Yang Song @y-song.bsky.social · 11/01/2025
Five years of hard work has paid off! 🎉 What a nice new year surprise—we made it to the cover of Nature Microbiology! 🌟 Acknowledgment to all co-authors and specially Elisa Atza for producing this cover image!
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Plant-Microbe Interactions @utrechtpmi.bsky.social · 10/01/2025
🎉 Congratulations to Dr. Jelle Spooren on the cum laude defense of his PhD thesis, "Plant-driven assembly of disease-suppressive microbiomes" 🌱🦠 🎓 Thanks to @jurriaanton.bsky.social and @algazuccaro.bsky.social for their thoughtful opposition in the defense and the great talks during the seminar!
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Tatsuya Nobori @tatsuyanobori.bsky.social · 08/01/2025
New year, new paper! Now published in @nature.com. We identified and characterised diverse immune cell states in plants under pathogen attack. My postdoc work in the Ecker lab at @salkinstitute.bsky.social. A thread (0/n) #PlantScience www.nature.com/articles/s41...
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Plant-Microbe Interactions @utrechtpmi.bsky.social · 08/01/2025
Great journal club bij @gijsselten.bsky.social about www.nature.com/articles/s42... showing how to get passed the linear limitations of traditional methods in microbiome research!
nature.com
Agricultural practices influence soil microbiome assembly and interactions at different depths identified by machine learning - Communications Biology
Machine learning breaks through the linear limitations of traditional methods, providing deeper insights into the assembly, interactions, and mechanisms underlying microbiomes at varying soil depths u...
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Nature Microbiology @natmicrobiol.nature.com · 02/01/2025
Short on time? Read the Research Briefing for a short overview of the paper by @rlberendsen.bsky.social @y-song.bsky.social here: www.nature.com/articles/s41...
nature.com
Potato crop performance is predicted by tuber microbiome - Nature Microbiology
A predictive model developed using machine learning, high-throughput sequencing of the microbiomes associated with seed tubers and drone imaging of the crops growing from the tubers can forecast the p...
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Nature Microbiology @natmicrobiol.nature.com · 02/01/2025
OUT NOW: The seed tuber microbiome can predict future growth of potato varieties in the field 🥔🦠🌱 @rlberendsen.bsky.social @y-song.bsky.social & co www.nature.com/articles/s41...
nature.com
Seed tuber microbiome can predict growth potential of potato varieties - Nature Microbiology
Time-resolved drone imaging of potato crop development and seed tuber microbiome data can be used to predict potato vigour, or growth potential, in next-season crops in trial fields.
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François Mayer @francoismayer.bsky.social · 31/12/2024
New RESEARCH BRIEFING - Potato crop performance is predicted by tuber microbiome By Yang Song & Roeland Berendsen @rlberendsen.bsky.social www.nature.com/articles/s41...
nature.com
Potato crop performance is predicted by tuber microbiome - Nature Microbiology
A predictive model developed using machine learning, high-throughput sequencing of the microbiomes associated with seed tubers and drone imaging of the crops growing from the tubers can forecast the p...
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Roeland Berendsen @rlberendsen.bsky.social · 28/12/2024
www.nature.com/articles/s41... 🌱🚜 Excited to see our paper in @naturemicrobiol.bsky.social ! Amazing effort by @y-song.bsky.social in collaboration with TU Delft (Neil Budko, Elisa Atza) and the Dutch potato breeding industry to harness the power of the microbiome! 🥔🔬@utrechtpmi.bsky.social
nature.com
Seed tuber microbiome can predict growth potential of potato varieties - Nature Microbiology
Time-resolved drone imaging of potato crop development and seed tuber microbiome data can be used to predict potato vigour, or growth potential, in next-season crops in trial fields.
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Plant-Microbe Interactions @utrechtpmi.bsky.social · 27/11/2024
The plant microbiome starter pack is far from complete. Let us know if you want to be on it! go.bsky.app/QG4wCyf
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Corné Pieterse @cornepieterse.bsky.social · 05/12/2024
We have a vacancy for a PhD position with our recently started PMI PI @arsheed-sheikh.bsky.social at Utrecht University. Please apply via: www.uu.nl/en/organisat...
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Bas E. Dutilh @bedutilh.bsky.social · 04/12/2024
We have an opening for a 4-year postdoc position to study the #rhizosphere #microbiome in @utrechtuniversity.bsky.social @w-u-r.bsky.social, joint project with @marnixmedema.bsky.social in the context of MiCRop. Please tag/forward this to potential candidates and/or repost: www.uu.nl/en/organisat...
uu.nl
Bioinformatics Postdoc at UU/WUR: Map Metabolic Interactions in the Rhizosphere
Contribute to plant health and our understanding of the metabolic interactions between microbes and plants in the rhizosphere by computational modelling!
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Kevin K. Yang 楊凱筌 @kevinkaichuang.bsky.social · 11/11/2024
I tried to make a bioml starter pack. DM if you want me to add or remove you? go.bsky.app/2VWBcCd
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Plant-Microbe Interactions @utrechtpmi.bsky.social · 29/11/2024
Yesterday, our dear colleague Saskia van Wees delivered her inaugural address, 'Plants are anything but defenceless creatures'. A fascinating exploration of plant resilience, hormones and innovation. 🌱 Read more: www.uu.nl/en/news/inau... #Science #uubeta #UtrechtUniversity #Plants
uu.nl
Inaugural lecture by Saskia van Wees: "Plants are anything but defenceless creatures"
Saskia van Wees investigates the intricacies of plant resistance and the role plant hormones play in these processes. Today, she delivers her inaugural lecture.
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Franciska de Vries 🟥 @frantecol.bsky.social · 27/11/2024
It’s out!! We subjected soils from 30 different locations across Europe to extreme events and found that soil fungal and bacterial communities showed consistent responses that could be predicted from their origin! With @knightjar.bsky.social and many collaborators! www.nature.com/articles/s41...
nature.com
Soil microbiomes show consistent and predictable responses to extreme events - Nature
Soils from 30 grasslands across Europe were subjected to 4 contrasting extreme climatic events under drought, flood, freezing and heat conditions, with the results suggesting that soil microbiomes fro...
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Plant-Microbe Interactions @utrechtpmi.bsky.social · 27/11/2024
We're super proud of Doctor Sietske van Bentum! A more than outstanding defence of her thesis 'Disease-associated shifts in the rhizosphere microbiome: towards a soy-borne legacy'
Sietske van Bentum PhD defence
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Plant-Microbe Interactions @utrechtpmi.bsky.social · 27/11/2024
The plant microbiome starter pack is far from complete. Let us know if you want to be on it! go.bsky.app/QG4wCyf
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Plant-Microbe Interactions @utrechtpmi.bsky.social · 26/11/2024
Great journal club today! @sophievijverberg.bsky.social guided us through an exciting Nature Microbiol paper by Karasov et al., exploring the Arabidopsis thaliana phyllosphere microbiome across Europe. A valuable resource for the plant microbiome field: www.nature.com/articles/s41...
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Plant-Microbe Interactions @utrechtpmi.bsky.social · 14/11/2024
"Digging up Europe! 🌍🪱 The UUPMI - Microbiomes4Soy team just collected 100 soil samples from soybean fields across five countries. Why? To unlock the secrets of soil microbiomes for better crops! Stay tuned for some 'ground-breaking' discoveries! 🌱🔬 #Microbiomes4Soy #plantmicrobiome
microbiomes4soy.eu
Microbiomes4Soy Soil Sampling Campaign: Collecting Agricultural Soil Across Europe – Microbiomes4soy
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Corné Pieterse @cornepieterse.bsky.social · 13/11/2024
First steps on Bluesky.... Let's test how it works by re-sharing Klokhuis Dutch national kids TV broadcast on our Netherlands Plant Ecophenotyping Centre: hetklokhuis.nl/tv-uitzendin... #PlantScience
hetklokhuis.nl
Uitzending - Plantenlaboratorium
Om ervoor te zorgen dat iedereen op de aardbol genoeg te eten heeft zullen we heel slim met ons voedsel om moeten gaan. Tirsa gaat naar een hightech plantenlaboratorium in Utrecht. Daar wordt uitvoeri...
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Plant-Microbe Interactions @utrechtpmi.bsky.social · 14/11/2024
Utrecht PMI is on Bluesky!
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Plant-Microbe Interactions @utrechtpmi.bsky.social · 14/11/2024
Utrecht PMI is on Bluesky!
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