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AI in Digital Health & Bioinformatics Lab

@tyagilab.bsky.social
25 followers 19 following 31 posts

We are based at Data Science & AI division of RMIT School of Computing Technologies, RMIT University, Australia rmit.edu.au/sonika-tyagi-lab

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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 04/09/2026
lnkd.in/p/gTtrqTku PregBase is published in 𝗔𝗿𝘁𝗶𝗳𝗶𝗰𝗶𝗮𝗹 𝗜𝗻𝘁𝗲𝗹𝗹𝗶𝗴𝗲𝗻𝗰𝗲 𝗶𝗻 𝗠𝗲𝗱𝗶𝗰𝗶𝗻𝗲. The first comprehensive knowledge base designed specifically for pregnancy research. Try it: pregknowledgebase.com Read the full paper: lnkd.in/gs7W9KdS #PregBase #MaternalHealth #PhD #RMIT #DigitalHealth #TyagiLab
lnkd.in
New research out of STEM College has developed PregBase - the first knowledge base built specifically to bring together decades of pregnancy research in one place. PregBase is an AI system that… | RM...
New research out of STEM College has developed PregBase - the first knowledge base built specifically to bring together decades of pregnancy research in one place. PregBase is an AI system that reads...
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Sonika Tyagi @tsonika.bsky.social · 31/07/2026
We are hosting the 2026 @abacbs.bsky.social conference at RMIT University City Campus Melbourne on 16-20 Nov 2026. Hope to see you there.
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Sonika Tyagi @tsonika.bsky.social · 08/07/2026
New paper from the lab on pre-prints now. Led by PhD student @muraliaadhitya.bsky.social
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 13/05/2026
🚨 New Report: Australia’s digital health future depends on a workforce we don’t yet have. Our latest report reveals a critical shortage in Clinical Information Modelling skills - the "human bridge" between healthcare and data - putting national interoperability goals like Sparked and AUCDI at risk.
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Sonika Tyagi @tsonika.bsky.social · 06/03/2026
🔊Applications invited: hashtag#Funded BITS–RMIT hashtag#PhD program offering international experience. We have two #WomenHealth oriented #DigitalHealth projects listed. These projects are designed to look at unique Australian and Indian context of different womens health outcome questions.
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abacbs.bsky.social @abacbs.bsky.social · 02/03/2026
We are delighted to announce that #ABACBS2026 will be held at RMIT, Melbourne CBD campus from 16th to 20th November 2026. Big thanks to A/Prof. Sonika Tyagi and team for leading this years organising! More details and official conference launch to follow! #bioinformatics @combine1.bsky.social
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 23/02/2026
The article by Sam Mainwood and Aashish Bhandari is now published. dl.acm.org/doi/10.1145/...
dl.acm.org
Semantic Encoding in Medical LLMs for Vocabulary Standardisation | Proceedings of the 2025 18th Health Informatics Knowledge Management Conference
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 30/01/2026
A book chapter from the lab: This chapter explores multi-omics integrative studies enabled by machine learning, presenting an overview of state-of-the-art methodologies and the foundational background. Suitable for both beginners & advanced bioinformaticians www.sciencedirect.com/science/chap...
sciencedirect.com
Multi‐omics applications in health and diseases
Multi-omics research has transformed our ability to study biological systems by capturing information across multiple molecular layers, including geno…
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 22/01/2026
Congratulations @aashishbhandari.com 👏
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 13/01/2026
👏
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 13/01/2026
🔈 *** Deadline extended to 26 Jan 2026 **** 🔈 Applications are now open for the second call of the Australia-Spain Network for Innovation and Research Excellence (AuSpire), a postdoctoral network co-funded by the European Union. 🔗 More details on the project: lnkd.in/gZgg7PVm
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Sonika Tyagi @tsonika.bsky.social · 20/11/2025
Team day out @tyagilab.bsky.social
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 21/10/2025
Our lab head, @tsonika.bsky.social, presented at the 2025 Victorian Affiliation of Research Nurses Inc. Conference on the applications of AI in clinical trials. The session sparked a great exchange of ideas with delegates, highlighting the excitement and opportunities in this rapidly evolving field.
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 14/10/2025
Our latest paper presents EHR-QC 2.0, a major upgrade to our open-source pipeline for preparing and standardising biomedical & genomic EHR data for machine learning. 🔍 What’s new: LLM-enabled clinical vocabulary mapping Support for FHIR A web-based interface 🔗 papers.ssrn.com/sol3/papers....
papers.ssrn.com
<span>An accessible pipeline for LLM-driven medical concept mapping, automated OMOP and FHIR conversion</span>
Background:Our previous work introduced the open-source EHR-QC pipeline. This pipeline implements extraction, transform and load (ETL), pre-processing and quali
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 14/10/2025
Our latest review explores how RNA foundation models are reshaping predictions of ncRNA structure & function. We highlight key architectures, training strategies, and open challenges to guide the next phase of RNA-AI research. Read here 👉 link.springer.com/article/10.1...
link.springer.com
Advancing non-coding RNA annotation with RNA sequence foundation models: structure and function perspectives - BMC Artificial Intelligence
Noncoding RNAs (ncRNAs) form the major part of the expressed transcriptome. These are critical in regulating gene expression and contributing to disease mechanisms, primarily through their complex sec...
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 14/10/2025
Our latest paper combines multi-omics integration with genome-scale NLP models trained on DNA to uncover how S. aureus regulates infection, metabolism, and antibiotic resistance. This unique organism agnostic method offers a new lens for systems-level biology. 🔗 www.nature.com/articles/s41...
nature.com
Understanding the regulatory grammar of sepsis-causing Staphylococcus aureus bacteria using contexualised DNA language models - Scientific Reports
Scientific Reports - Understanding the regulatory grammar of sepsis-causing Staphylococcus aureus bacteria using contexualised DNA language models
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 13/10/2025
📢 Join us for the next Digital Health Reading Group! We’ll be diving into fairness, bias, and ethics in AI for healthcare from the book - Fairness and Machine Learning: Limitations and Opportunities. 🗓️ Thu, 16 Oct 2025 🕧 12:30–1:30 pm 📍 Room 014.10.035A, RMIT University, Melbourne + online (Teams)
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 25/09/2025
Research published in 2024 by our lab member @naimavahab.bsky.social and continue to use this for future work on elucidating biological regulatory pathways.
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Sonika Tyagi @tsonika.bsky.social · 04/09/2025
Kudos to Naima Vahab for presenting her PhD research at "Storytelling for Impactful Research (STIR) Competition " at RMIT STEM College. What an amazing opportunity for polishing your #scicomm skills and knowledge sharing across STEM disciplines. @tyagilab.bsky.social @rmitcomputing.bsky.social
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Sonika Tyagi @tsonika.bsky.social · 27/08/2025
Contributions to review on graph learning:
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Sonika Tyagi @tsonika.bsky.social · 07/08/2025
We had a fantastic day for team building and a send-off lunch and marking our mid-season break. It was a lovely opportunity to come together and celebrate, with some intense competition on the bowling lanes! 😆 We will miss having you around at @tyagilab.bsky.social @muraliaadhitya.bsky.social 🙌🏽
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 25/07/2025
Legitimacy vs Fairness in automated decision making. A summary from our recent book club reading by @esha4.bsky.social of the #TyagiLab aiineverything.blogspot.com/2025/07/when... @tsonika.bsky.social
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 22/07/2025
#foundationsofAI #AI #teaching
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 20/07/2025
#Repost #AI #machinelearning #historyofAI What is AI ? aiineverything.blogspot.com/2025/07/ai-i...
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a black and white image of a person 's face
ALT: a black and white image of a person 's face
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 16/07/2025
Lab represents at Monash Translation Medicine student symposium and 3MT competition. Well done! #3mt #threeminutesthesis #phd #ecr #tyagilab
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 12/07/2025
#Interpretable vs #explainable #AI 📖 An informative post by lab members @esha4.bsky.social and @tnavya.bsky.social 📖
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 11/07/2025
Lab lunch @QVM Melb
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Sonika Tyagi @tsonika.bsky.social · 18/06/2025
New preprint from the lab @tyagilab.bsky.social
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Sonika Tyagi @tsonika.bsky.social · 02/04/2025
Interoperability and healthcare data : digitalhealth.org.au/blog/getting...
digitalhealth.org.au
Getting to the Core of Implementing Australia's Accelerating Interoperability Standards - VIC Brand Event - AIDH
AIDH is Australasia’s peak body for digital health representing a united and influential single voice for health informatics and digital health leaders and practitioners. Become a Member or Fellow and...
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 17/06/2025
A timely initiative by @tsonika.bsky.social and team at @rmitcomputing.bsky.social
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 17/06/2025
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Sonika Tyagi @tsonika.bsky.social · 04/05/2025
New publication from the lab @tyagilab.bsky.social academic.oup.com/biomethods/a... #multimidaldata #biomedicaldata #dataharmonisation #tyagilab
academic.oup.com
Navigating the Multiverse: a Hitchhiker’s guide to selecting harmonization methods for multimodal biomedical data
Abstract. The application of machine learning (ML) techniques in predictive modelling has greatly advanced our comprehension of biological systems. There i
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Sonika Tyagi @tsonika.bsky.social · 12/05/2025
New publication from the lab @tyagilab.bsky.social Applications of linguistics in genome language modeling academic.oup.com/biomethods/a...
academic.oup.com
Genome language modeling (GLM): a beginner’s cheat sheet
Abstract. Integrating genomics with diverse data modalities has the potential to revolutionize personalized medicine. However, this integration poses signi
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AI in Digital Health & Bioinformatics Lab @tyagilab.bsky.social · 18/03/2025
Good work by @aashishbhandari.com #digitalhealth #missingdata #machinelearning #predictivemodeling #AIforHealth
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Sonika Tyagi @tsonika.bsky.social · 07/12/2024
Thank you Australian Mathematical Sciences Institute for organising yet another great #BioinfoSummer event this year. It was good to be back there. Proud of my PhD for presenting their research and even better to be taking out a prize💰🏆
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Sonika Tyagi @tsonika.bsky.social · 31/01/2025
Our updated preprint on @medrxivpreprint.bsky.social from the #TyagiLab a beginners guide to planing multimodal machine learning analysis on bio/medical data.
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Sonika Tyagi @tsonika.bsky.social · 31/01/2025
#hotoffthepress #newpublication from the #TyagiLab "EHR-ML: A Data-Driven Framework for Designing Machine Learning Applications with Electronic Health Records “ Pre-proof is online now: lnkd.in/gHHrFEGF
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Sonika Tyagi @tsonika.bsky.social · 10/02/2025
We have a #ComparativeGenomics #bioinformatics Postdoctoral position available jointly at the Barcelona Supercomputing Center and RMIT University lnkd.in/e_cbDBER Submit your application by 3 April 2025 at auspire.eu
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