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tirthabanerjee.bsky.social

@tirthabanerjee.bsky.social
19 followers 19 following 13 posts
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tirthabanerjee.bsky.social @tirthabanerjee.bsky.social · 28/09/2026
My first PCB designed for neuro behavioural assays:D
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tirthabanerjee.bsky.social @tirthabanerjee.bsky.social · 14/07/2026
Our RAMFISH update is live: an open-source spatial transcriptomics ecosystem. Mid-plex (>30 genes) in 2D and whole mount tissues. Aligners for free-floating tissue. Quantification and visual confirmation. Preprint: www.biorxiv.org/content/10.1... GitHub: github.com/tdblab/RAMFISH
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tirthabanerjee.bsky.social @tirthabanerjee.bsky.social · 23/01/2026
Evolution rarely invents from scratch. Our recent study reveals that butterfly eyespots evolved by co-opting an ancient wing vein gene network. New trait, old genes. The study is now published in Communications Biology (featured: Jan26) www.nature.com/articles/s42...
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tirthabanerjee.bsky.social @tirthabanerjee.bsky.social · 19/10/2025
Happy to share that the preprint of our updated spatial mRNA multiplexing using RAMFISH (v2.0) is out... www.biorxiv.org/content/10.1... Special thanks to all the collaborators for their efforts.
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tirthabanerjee.bsky.social @tirthabanerjee.bsky.social · 17/08/2025
Excited to share that our Geneplexer and Multiplexer systems can now achieve spatial mRNA signal detection within 4.5 hrs, including hybridization, secondary amplification, and washes. Image: A z-slice (~5 µm) of a whole 14 dpf WT zf larva stained against markers nrp1a, gad2, and neuroD.
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tirthabanerjee.bsky.social @tirthabanerjee.bsky.social · 16/07/2025
Happy to collaborate with Ajay Mathuru's team at NUS. "Role of chrna5 in multi-substance preference and phenotypes comorbid with the development of substance dependence." Congratulations to the co-first authors, Tanisha Goel and Joshua Raine. www.biorxiv.org/content/10.1...
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tirthabanerjee.bsky.social @tirthabanerjee.bsky.social · 10/04/2025
Happy to share that our recent Bicyclus larval brain multiplex-FISH paper has been featured on the cover of Methods and Protocols. www.mdpi.com/2409-9279/8/2
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tirthabanerjee.bsky.social @tirthabanerjee.bsky.social · 14/03/2025
Happy to share our latest 3D whole-mount multiplex-RNA brain scans of the larval brains of Bicyclus anynana at single-cell resolution... We mapped multiple targets at single-cell resolution and made the raw data open source for anyone who would like to analyse it. www.mdpi.com/2409-9279/8/...
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tirthabanerjee.bsky.social @tirthabanerjee.bsky.social · 12/12/2024
Our new manuscript describing gene multiplexing (using RAM-FISH) is finally out... We profiled multiple known and novel mRNA candidates during different developmental stages of Bicyclus and zebrafish using the easy-to-use HCR-based protocol that most labs can adapt. www.biorxiv.org/content/10.1...
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