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Engelhardt Research Group

@thebeehive.bsky.social

378 followers 614 following 38 posts

Engelhardt Research Group at Stanford University and Gladstone Institutes. Statistical genomics, live-cell imaging, wearable data, cancer immunology, reproductive health.

Posts Replies Media

Engelhardt Research Group @thebeehive.bsky.social · 08/12/2025

Wish I were in Baltimore for this! Looks super exciting and forward thinking.

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Engelhardt Research Group @thebeehive.bsky.social · 04/12/2025

Last talk of this session! #NeurIPS2025

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Engelhardt Research Group @thebeehive.bsky.social · 04/12/2025

Next up! #NeurIPS2025

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Engelhardt Research Group @thebeehive.bsky.social · 04/12/2025

First up! Nine minutes!!

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Engelhardt Research Group @thebeehive.bsky.social · 04/12/2025

Please join us for these incredible papers and discussions with authors on important issues for the NeurIPS community 🤩

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Engelhardt Research Group @thebeehive.bsky.social · 29/04/2025

Super excited to tell you about our preprint on Neighborhood Nonnegative Matrix Factorization (NNMF) for spatially-aware dimension reduction in spatial transcriptomics, led by Ragnhild Laursen in collaboration with Karin Pelka @pelkalab.bsky.social and her lab! www.biorxiv.org/content/10.1...

biorxiv.org

Neighborhood nonnegative matrix factorization identifies patterns and spatially-variable genes in large-scale spatial transcriptomics data

Tissues consist of multi-cellular neighborhoods in which different cell types express correlated gene programs due to shared signaling environments. Methods for identifying these spatial neighborhoods...

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Engelhardt Research Group @thebeehive.bsky.social · 21/01/2025

Exciting update!! @bioimagearchive.bsky.social is now hosting the first publicly available Incucyte data! If you have live-cell imaging data, please consider uploading to this amazing repository!! Thanks to Julia Carnevale and Alex Marson for experimental data — www.ebi.ac.uk/biostudies/b...

ebi.ac.uk

BioStudies < The European Bioinformatics Institute < EMBL-EBI

BioStudies – one package for all the data supporting a study

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Engelhardt Research Group @thebeehive.bsky.social · 26/11/2024

First post in the Good Place! Our preprint on cellular behavior analysis in TCR T cells & cancer cell live-cell imaging data is out! This 3-year collaboration led by pd Archit Verma w/ Alex Marson & Julia Carnevale, with segmentation & tracking by @davidvv & team! www.biorxiv.org/content/10.1...

biorxiv.org

Cellular behavior analysis from live-cell imaging of TCR T cell–cancer cell interactions

T cell therapies, such as chimeric antigen receptor (CAR) T cells and T cell receptor (TCR) T cells, are a growing class of anti-cancer treatments. However, expansion to novel indications and beyond l...

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