Sign in

Taki Nishimura

@takinishimura.bsky.social
21 followers 16 following 1 posts

Professor at Osaka University | CLiB assay, Lipid-binding probe, Autophagy and Membrane biology

PostsRepliesMedia
Reposted by Taki Nishimura
Jeremy Baskin @jeremybaskin.bsky.social · 06/08/2026
Thrilled to share our new work, co-developed w/Adrian Salic's lab: bioorthogonal probes for labeling PE, a multifunctional membrane lipid and source of important protein modifications. Congrats to Yuan-Ting Cho, Brittany White-Mathieu, Jade Xia, & Cindy Jao! onlinelibrary.wiley.com/doi/10.1002/...
onlinelibrary.wiley.com
Bioorthogonal Tools for Ethanolamine Lipids and Protein Conjugates
An alkyne-tagged ethanolamine analog (AlkEA) enables bioorthogonal, metabolic labeling of endogenous phosphatidylethanolamine (PE) and its protein modifications. AlkEA is incorporated into PE via the...
03912
Reposted by Taki Nishimura
André Nadler @nadlerlab.bsky.social · 29/07/2026
Lipids build the membranes of all cells, but identifying their precise functions is extremely challenging. Here’s our attempt to change that: How to find and understand lipid-protein interactions, by Katelyn Cook & company. www.biorxiv.org/content/10.6...
716070
Taki Nishimura @takinishimura.bsky.social · 03/07/2026
Excited to share our paper in Nature Cell Biology with Kotaro Tsuboyama: www.nature.com/articles/s41... Using our CLiB, we enable development of high-performance lipid-binding probes. Please reach out if you are interested in using our probes or collaborating on protein–lipid interaction studies!
nature.com
Cell surface liposome binding (CLiB) allows lipid-binding probe engineering via high-throughput screening - Nature Cell Biology
Nishimura et al. develop a platform named cell surface liposome binding (CLiB), which allows the high-throughput monitoring of protein–lipid interactions and can be used to design lipid-binding probes...
011
Reposted by Taki Nishimura
Jeremy Baskin @jeremybaskin.bsky.social · 07/01/2026
Thrilled to share our latest study, led by @reikatei.bsky.social, in @natchembio.nature.com! We began by asking a simple question—how do cells know if they have too much of a lipid in a particular membrane, and how do they respond to rectify this imbalance? www.nature.com/articles/s41... More info 👇
nature.com
Membrane editing with proximity labeling reveals regulators of lipid homeostasis - Nature Chemical Biology
Coupling an optogenetic lipid-modifying enzyme with proximity labeling reveals protein networks and mechanisms regulating lipid homeostasis in the membranes of target organelles.
716261
Reposted by Taki Nishimura
Jeremy Baskin @jeremybaskin.bsky.social · 19/03/2025
Super cool: a glycosylated polyene polyketide that has potent antifungal activity by targeting several phospholipids to permeabilize membranes! #lipidtime
032
Reposted by Taki Nishimura
Jeremy Baskin @jeremybaskin.bsky.social · 06/03/2025
🚨New preprint: There's this overlooked phospholipid with 3 acyl tails called NAPE that is made during ischemia. We identified its interactome & found it regulates lactate flux, suggesting metabolic functions in response to hypoxia. Congrats to Dylan Chiu! doi.org/10.26434/che... #lipidtime #chembio
46717
Reposted by Taki Nishimura
bioRxivpreprint @biorxivpreprint.bsky.social · 14/01/2025
Spatiotemporal temperature control by holographic heating microscopy unveils cellular thermosensitive calcium signaling www.biorxiv.org/content/10.1101/202…
002
Reposted by Taki Nishimura
Jeremy Baskin @jeremybaskin.bsky.social · 07/01/2025
Very cool #lipidtime preprint from Taki Nishimura and colleagues: engineering of new lipid-binding probes from PH domains and nanobodies from a high-throughput assay where liposomes bind to cell surfaces displaying members of the protein probe library. www.biorxiv.org/content/10.1...
biorxiv.org
Rational engineering of lipid-binding probes via high-throughput protein-lipid interaction screening
Lipid-binding domains, originally isolated from natural proteins, are useful tools essential for analyzing membrane lipids in cells, and their applications are varied. Yet, there is no general strateg...
03910