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Stats For Bios

@statsforbios.bsky.social
2.1K followers 473 following 1.3K posts

Statistics for biologists, medics, statisticians. Anyone really. By Tim Lucas, lecturer in epi/stats.

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Stats For Bios @statsforbios.bsky.social · 29/09/2026
Why does windows default to not showing file extensions? So stupid. And a really nice way to make teaching into R more difficult. #RStats
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Rod Page @rdmpage.bsky.social · 23/09/2026
Jobs galore at @nhm-london.bsky.social @dissco.bsky.social - jobs.nhm.ac.uk/Job/JobDetai... - jobs.nhm.ac.uk/Job/JobDetai... - jobs.nhm.ac.uk/Job/JobDetai... - jobs.nhm.ac.uk/Job/JobDetai... - jobs.nhm.ac.uk/Job/JobDetai... including Heads of Digitisation and Technical Innovation
jobs.nhm.ac.uk
DiSSCo UK Digitiser:South Kensington
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Saganism @sagan.bsky.social · 22/09/2026
A humbling reminder from Carl Sagan: Even if you read 1 book a week for your entire life, you'd only scratch the surface of human knowledge.
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MC Stan @mc-stan.org · 17/09/2026
Release of CmdStan 2.40, including new Stan Math, core Stan, and Stanc, is now available! Blog post with new features blog.mc-stan.org/2026/09/16/r... Highlights - integrate_1d_double_exponential, a variadic version of old integrate_1d - integrate_1d_gauss_kronrod, a different quadrature rule ...
blog.mc-stan.org
Release of CmdStan 2.40
We are very happy to announce that the 2.40.0 release of CmdStan is now available on Github! As usual, the release of CmdStan is accompanied by new releases of Stan Math, core Stan, and Stanc3. Thi…
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Stats For Bios @statsforbios.bsky.social · 17/09/2026
Had a great week teaching Geospatial Models for Public Health at Tanzanian National Bureau of Statistics. Been supporting Janine Illian teaching inlabru and teaching disagapp for disaggregation regression. inlabru-courses.github.io/Tanzania_202... Now get the train back to Dar es Salaam
View from train from Dar es Salaam to Dodoma.
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Stats For Bios @statsforbios.bsky.social · 16/09/2026
Reminder that "wiggly" is absolutely a technical statistical term. No discussion needed.
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Stats For Bios @statsforbios.bsky.social · 11/09/2026
Preprint shinyapp by @simonsmart.bsky.social here. User-friendly, reproducible software for high-resolution predictions from aggregate polygon case counts (or other data). Once you're done, click a button to get a Rmd file out. #RStats #DiseaseMapping #malaria www.medrxiv.org/content/10.6...
The Disagapp hex logo. Polygons and rasters superimposed.
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Francisco Rodriguez-Sanchez @frodsan.bsky.social · 11/09/2026
This paper is 20 years old but keeps being as relevant today as back then :/ doi.org/10.1111/j.13... #statistics #ecopubs
Why do we still use stepwise modelling in ecology and behaviour?

The principal drawbacks of stepwise multiple regression include bias in parameter estimation, inconsistencies among model selection algorithms, an inherent (but often overlooked) problem of multiple hypothesis testing, and an inappropriate focus or reliance on a single best model.
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Richard McElreath 🐈‍⬛ @rmcelreath.bsky.social · 10/09/2026
Modeling non-response is an example I like to use when arguing that "descriptive" statistics also require causal inference. To describe the population, you have to model what causes the sample. Similar to occupancy modeling in ecology in many ways.
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Stats For Bios @statsforbios.bsky.social · 11/09/2026
Preprint shinyapp by @simonsmart.bsky.social here. User-friendly, reproducible software for high-resolution predictions from aggregate polygon case counts (or other data). Once you're done, click a button to get a Rmd file out. #RStats #DiseaseMapping #malaria www.medrxiv.org/content/10.6...
The Disagapp hex logo. Polygons and rasters superimposed.
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Stats For Bios @statsforbios.bsky.social · 10/09/2026
My bar for genAI has been for a while "I'll consider it useful when it can fill in a form for me". Copilot, with a lot of prompting and nonsense, filled 90% of a form for me. That's it, I'm in.
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Stats For Bios @statsforbios.bsky.social · 09/09/2026
The YouTube android app is just so much worse than the mobile webpage. And I can't delete it.
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Aki Vehtari @avehtari.bsky.social · 08/09/2026
I'm looking for doctoral students, postdocs and research fellows to work with on Bayesian Workflow. Flexible starting time
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Stats For Bios @statsforbios.bsky.social · 08/09/2026
Say I've got a train dataset and a test data set. I fit a linear model to the train set and evaluate within-sample error. Then I fit the linear model to the train set and evaluate with the test set (i.e. cross validation). The 2 models are identical and equally overfit. The metric is different.
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Stats For Bios @statsforbios.bsky.social · 08/09/2026
I've probably moaned about this before. Cross validation doesn't control overfitting (your model is still just as overfit). It (tries to) estimates predictive performance without being tricked by overfitting. Big difference.
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Visruth Srimath Kandali @visruth.com · 01/09/2026
`stanflow` v0.2.0 is out! `stanflow` is a metapackage a la `tidyverse` to provide a convenient way to install and manage #rstats Stan packages. The package is still in early stages; as such, if you want some features they can probably be added! Stan forum: discourse.mc-stan.org/t/stanflow-v...
discourse.mc-stan.org
`stanflow` v0.2.0 is out
It’s been a while, but stanflow v0.2.0 has just been released by @Visruth. stanflow is a metapackage a la tidyverse to provide a convenient way to install and manage R Stan packages. (See Soft relea...
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Dave Hemprich-Bennett @davehb.bsky.social · 02/09/2026
It's pretty wild to see how much the air quality has improved in the areas of London I frequented before I left. Looks like NO2 is now ~1/4 of what it used to be at my old uni when I started there. Fantastic stuff
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giorgistat.bsky.social @giorgistat.bsky.social · 02/09/2026
New paper out in the Journal of the Royal Statistical Society (Series A), with @claudiofronterre.bsky.social and Peter Diggle. academic.oup.com/jrsssa/advan...
academic.oup.com
A decay-adjusted spatio-temporal model to account for the impact of mass drug administration on neglected tropical disease prevalence
Abstract. Prevalence surveys are routinely used to monitor the effectiveness of mass drug administration (MDA) programmes for controlling Neglected Tropica
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Stats For Bios @statsforbios.bsky.social · 01/09/2026
Playing around with my Goodreads data. lm(My.Rating ~ Number.of.Pages + Year.Published + Author.Reads + Year.Added) Author.Reads is how many books by that author I've read. Anyone wanna play guess the R^2 or guess sign and sig of variables? #RStats
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Francisco Rodriguez-Sanchez @frodsan.bsky.social · 01/09/2026
Great collection of Shiny apps (and R package) for #teaching #ecology. Apps come in different languages (including Spanish) ecoevoapps.gitlab.io
Partial list of Shiny apps designed for teaching ecology, hosted at https://ecoevoapps.gitlab.io/
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medRxivpreprint @medrxivpreprint.bsky.social · 18/06/2026
Accounting for Human Movement to Improve Exposure-Health Models www.medrxiv.org/content/10.64898/20…
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Stats For Bios @statsforbios.bsky.social · 28/08/2026
Wanted to know how many unhidden slides I had in my ppt deck. Found a useful solution (right click the file, properties. has slides and hidden slides). The solution is given in such a smug way though! Duh, just look in the file properties. learn.microsoft.com/en-us/answer...
learn.microsoft.com
how to count unhidden slide in power point 365 - Microsoft Q&A
how to count unhidden slide in power point 365?? still use VBA ?
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Stats For Bios @statsforbios.bsky.social · 25/08/2026
Reread my blog post on the biggest problem in statistics. On re-read, I still don't think it is terrible (other than the typos and things). So I'll repost. timcdlucas.github.io/the-biggest-...
timcdlucas.github.io
The Biggest Problem In Statistics
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Stats For Bios @statsforbios.bsky.social · 28/08/2026
Using a causal lens to help understand spatial models. No maths. Particularly relevant to spatial epidemiologists and species distribution modellers. But others as well. timcdlucas.github.io/spatial_mode... #SDM #malaria #GIS #episky #CausalInference
timcdlucas.github.io
Spatial_models_with_a_causal_lens
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Stats For Bios @statsforbios.bsky.social · 27/08/2026
This series is really great. I read the whole economics one and dipped in and out of the maths one. Kind of high school level. usborne.com/gb/books/ser...
usborne.com
For Beginners - Series - Books | Usborne | Be Curious
We are the leading UK independent publisher of children's books. Our books are available worldwide. Browse our catalogue and find out where to buy Usborne books
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Stats For Bios @statsforbios.bsky.social · 26/08/2026
"Laughter has dug more useful tunnels all by itself than all the tears on earth." Cortázar - Hopscotch Not sure if I agree but I like it nonetheless.
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Stats For Bios @statsforbios.bsky.social · 07/08/2026
Estimating the effect of short term (hourly) air pollution is difficult but that's what we tried to do here. We used data that, unusually, has admission time. We found significant associations between NO2 and asthma admission at 3-6 hour lags but not other lags. bmjopen.bmj.com/content/16/8...
The relative risk (RR) of emergency hospital admissions associated with mean nitrogen dioxide at the specific lags from 0 to 24 hours. Note: the red line shows the average RR of emergency hospital admissions for acute asthma, and the error bars are the 95% CIs.

Lags between 0 and 2 hours are insignificant, with large uncertainties at 0 hours. Lags between 3 and 6 hours are significantly positive, with CIs around 1,005 and 1.04. After 6 hours, all CIs cover zero again.
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Stats For Bios @statsforbios.bsky.social · 25/08/2026
Reread my blog post on the biggest problem in statistics. On re-read, I still don't think it is terrible (other than the typos and things). So I'll repost. timcdlucas.github.io/the-biggest-...
timcdlucas.github.io
The Biggest Problem In Statistics
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Shikhara Bhat @shikharabhat.bsky.social · 20/08/2026
Some birds from Sabah to brighten your timeline
Bornean peacock pheasant Black-and-red broadbill Whitehead's trogonBornean banded pitta
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Stats For Bios @statsforbios.bsky.social · 13/08/2026
Album of the week. A black metal (blackgaze really) album about Bill the Pony. I mean look at that cover.
A cute cartoony illustration of Bill the Pony.
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Peter van Heusden (he/him) 🗿 @pvanheus.bsky.social · 10/08/2026
Someone made a similar finding with code: blog.terrygodier.com/2026/08/09/m...
blog.terrygodier.com
Mea Culpa - Dark Hours
Last week I launched a project called Dark Hours, which was a website utility to give you an idea of what could be seen in the sky that night. A developer who …
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Stats For Bios @statsforbios.bsky.social · 07/08/2026
Estimating the effect of short term (hourly) air pollution is difficult but that's what we tried to do here. We used data that, unusually, has admission time. We found significant associations between NO2 and asthma admission at 3-6 hour lags but not other lags. bmjopen.bmj.com/content/16/8...
The relative risk (RR) of emergency hospital admissions associated with mean nitrogen dioxide at the specific lags from 0 to 24 hours. Note: the red line shows the average RR of emergency hospital admissions for acute asthma, and the error bars are the 95% CIs.

Lags between 0 and 2 hours are insignificant, with large uncertainties at 0 hours. Lags between 3 and 6 hours are significantly positive, with CIs around 1,005 and 1.04. After 6 hours, all CIs cover zero again.
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Stats For Bios @statsforbios.bsky.social · 05/08/2026
Anscombe, who invented the Anscombe quartet, is from Hove (actually)! Didn't realise he was from so close to me.
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Stats For Bios @statsforbios.bsky.social · 05/08/2026
Dear people familiar with American education. At college level, does "freshman" only refer to undergraduates? Or can you also be a freshman grad student? Just reading a book and don't quite understand.
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Priscilla Lau @prilau.bsky.social · 30/07/2026
Our paper (also, my first first-author paper) is now available in MEE early view! In this study, we introduced a state-dependent Ornstein-Uhlenbeck model we implemented in RevBayes to test adaptive hypotheses in macroevolution. (1/3) besjournals.onlinelibrary.wiley.com/doi/10.1111/...
besjournals.onlinelibrary.wiley.com
An efficient Bayesian phylogenetic approach for joint inference of continuous and discrete trait evolution under a state‐dependent Ornstein–Uhlenbeck model
Macroevolutionary adaptation of a continuous trait to different discrete states across species can be modelled using a phylogenetic state-dependent Ornstein–Uhlenbeck (OU) process. Existing infere...
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Stats For Bios @statsforbios.bsky.social · 28/07/2026
Read some news about how crap social media is. Just endless adverts with no actual social component. But bluesky isn't like that! It's not a million-post-a-second fart of content, but what is here is pretty good, and social. So thanks for having me!
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Stats For Bios @statsforbios.bsky.social · 23/07/2026
Hey, someone that actually understand exponentials. Pretty rare on the internet it seems.
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Stats For Bios @statsforbios.bsky.social · 23/07/2026
The aching amplitudes that set our needles all a-flickering.
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Stats For Bios @statsforbios.bsky.social · 21/07/2026
Having different working directories for different chunks, and being tied to the script and stuff, is all just a mess. It used to work totally fine. You set the working directory. If you needed to change, you changed.
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Stats For Bios @statsforbios.bsky.social · 20/07/2026
Dear outlook. ctrl+r in the browser means refresh. Don't just override stuff that everyone knows! I'm renaming this account to "Old man yells at clouds for biologists". New logo in the works.
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Stats For Bios @statsforbios.bsky.social · 20/07/2026
UKRI, uninvited resubmissions are no longer accepted. BBSRC: Over 50% of objectives or work packages must be entirely new. Soooo, you spend a month (more) working on it, roll the dice once, and throw half of it in the bin if you get unlucky? This seems a really good way to increase wasted time.
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Stats For Bios @statsforbios.bsky.social · 16/07/2026
Ethan is just 5x better at being a food YouTuber than everyone else. Your dish is missing YouTube pedagogy. www.youtube.com/watch?v=aj8q...
youtube.com
5 simple questions that will ACTUALLY make you better at cooking.
YouTube video by Ethan Chlebowski
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Stats For Bios @statsforbios.bsky.social · 16/07/2026
PhD studentship for Sept 2026. Here are Leicester Biostats with Ellesha Smith and Laura Gray. Multiple Long‑Term Conditions and Network and Component Network Meta‑Analysis le.ac.uk/study/resear... #PhDJobs
le.ac.uk
Comparative Effectiveness of Interventions for Multiple Long‑Term Conditions Using Network and Component Network Meta‑Analysis | Postgraduate research | University of Leicester
University of Leicester PhD Comparative Effectiveness of Interventions for Multiple Long‑Term Conditions Using Network and Component Network Meta‑Analysis flow diagram Population Health Sciences ...
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Stats For Bios @statsforbios.bsky.social · 14/07/2026
Grant submitted and France out. Vamoos.
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Stats For Bios @statsforbios.bsky.social · 14/07/2026
Ideally applied data analysts doing research as well... Think about your question Think about your estimand Think about your study design Think about your dag Then write 1-10 lines of R code to data clean and fit an appropriate model.
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Stats For Bios @statsforbios.bsky.social · 14/07/2026
King for a day. All software must default to pasting without formatting. You can have a hotkey for pasting with formatting if you like. But ctrl + v is pasting without formatting everywhere forever all the time.
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Stats For Bios @statsforbios.bsky.social · 09/07/2026
Wrote a quick post on what I think the biggest open problem in statistics is. tldr every analysis has 10-20 medium important, medium difficult-to-fix issues. In practice we can account for 1 or 2 but not 10-20. Lots of typos. Just starting some chat. #StatsSky timcdlucas.github.io/the-biggest-...
timcdlucas.github.io
The Biggest Problem In Statistics
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Stats For Bios @statsforbios.bsky.social · 09/07/2026
Jeez the textedit app on Mac is a pain in the arse. It is desperate for my files to be RTF and just changes .md files to .rtf and adds a bunch of crap into them to make that work. I need to find something simpler and cleaner.
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Stats For Bios @statsforbios.bsky.social · 02/07/2026
Best (v. short) summary of the AI consciousness question. www.youtube.com/shorts/yoNtz...
youtube.com
The AI Consciousness Question is So Annoying #shorts
YouTube video by Robert Miles AI Safety
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Stats For Bios @statsforbios.bsky.social · 01/07/2026
Happened again. I don't know if it's some Mac vs windows thing, or something to do with windows refusing to save over files. But fuck it. Never commenting on a pdf ever again.
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