iiinova — where your digital self keeps evolving

soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

L. Balasubramaniam, et al., Dynamic forces shape the survival fate of eliminated cells. Nat. Phys. 1–10 (2025). dx.doi.org/10.1038/s41567-024-02716…

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soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

F. L. Lampart, et al., Morphometry and mechanical instability at the onset of epithelial bladder cancer. Nat. Phys. 1–10 (2025). dx.doi.org/10.1038/s41567-024-02735…

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soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

G. Šneiderienė, et al., Lipid-induced condensate formation from the Alzheimer’s Aβ peptide triggers amyloid aggregation. Proc. Natl. Acad. Sci. U. S. A. 122, e2401307122 (2025). dx.doi.org/10.1073/pnas.2401307122

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soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

T. Tlusty, A. Libchaber, Life sets off a cascade of machines. Proc. Natl. Acad. Sci. U. S. A. 122, e2418000122 (2025). dx.doi.org/10.1073/pnas.2418000122

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soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

A. A. Fragkopoulos, F. Böhme, N. Drewes, O. Bäumchen, Metabolic activity controls the emergence of coherent flows in microbial suspensions. Proc. Natl. Acad. Sci. U. S. A. 122, e2413340122 (2025). dx.doi.org/10.1073/pnas.2413340122

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soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

J. Wang, J. E. Butler, A. J. C. Ladd, Microfluidic purification of genomic DNA. Proc. Natl. Acad. Sci. U. S. A. 122, e2417757122 (2025). dx.doi.org/10.1073/pnas.2417757122

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soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

D. Valverde-Mendez, et al., Macromolecular interactions and geometrical confinement determine the 3D diffusion of ribosome-sized particles in live Escherichia coli cells. Proc. Natl. Acad. Sci. U. S. A. 122, e2406340121 (2025). dx.doi.org/10.1073/pnas.2406340121

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soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

H. J. Oh, et al., Size-controlled assembly of phase separated protein condensates with interfacial protein cages. Nat. Commun. 16, 1–14 (2025). dx.doi.org/10.1038/s41467-025-56391…

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soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

K. Tomohara, Y. Minagawa, H. Noji, Artificial cells with all-aqueous droplet-in-droplet structures for spatially separated transcription and translation. Nat. Commun. 16, 1–11 (2025). dx.doi.org/10.1038/s41467-024-55366…

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soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

E. Han, et al., Local polar order controls mechanical stress and triggers layer formation in Myxococcus xanthus colonies. Nat. Commun. 16, 952 (2025). dx.doi.org/10.1038/s41467-024-55806…

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soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

M. Burman, A. Noy, Atomic description of the reciprocal action between supercoils and melting bubbles on linear DNA. Phys. Rev. Lett. 134 (2025). dx.doi.org/10.1103/PhysRevLett.134.…

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soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

J. Liang, et al., Glass transition in monolayers of rough colloidal ellipsoids. Phys. Rev. Lett. 134 (2025). dx.doi.org/10.1103/PhysRevLett.134.…

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soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

W. D. Piñeros, É. Fodor, Biased ensembles of pulsating active matter. Phys. Rev. Lett. 134 (2025). dx.doi.org/10.1103/PhysRevLett.134.…

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soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

L. A. Hoffmann, L. Giomi, Homochirality in the Vicsek model: Fluctuations and potential implications for cellular flocks. Phys. Rev. E. 111 (2025). dx.doi.org/10.1103/PhysRevE.111.015…

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soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

P. A. Haas, S. S. M. H. Höhn, Cut it out: Out-of-plane stresses in cell sheet folding of Volvox embryos. Phys. Rev. E. 111 (2025). dx.doi.org/10.1103/PhysRevE.111.014…

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soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

S. R. Noureen, R. L. Mort, C. A. Yates, Modeling adhesion in stochastic and mean-field models of cell migration. Phys. Rev. E. 111 (2025). dx.doi.org/10.1103/PhysRevE.111.014…

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soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

A. Despons, Nonequilibrium properties of autocatalytic networks. Phys. Rev. E. 111 (2025). dx.doi.org/10.1103/PhysRevE.111.014…

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soft/living matter fanclub @softlivmatfc.bsky.social · 01/02/2025

H. Noguchi, Spatiotemporal pattern formation of membranes induced by surface molecular binding/unbinding. Soft Matter (2025). dx.doi.org/10.1039/D4SM01277A

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soft/living matter fanclub @softlivmatfc.bsky.social · 31/01/2025

M. Safdari, S. Li, S. Panahandeh, P. van der Schoot, R. Zandi, Impact of the RNA binding domain localization of the protein shell on virus particle stability. arXiv [physics.bio-ph] (2025). arxiv.org/abs/2501.13891

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soft/living matter fanclub @softlivmatfc.bsky.social · 31/01/2025

C. Hanauer, et al., A model for self-organized growth, branching, and allometric scaling of the planarian gut. arXiv [physics.bio-ph] (2025). arxiv.org/abs/2501.11182

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soft/living matter fanclub @softlivmatfc.bsky.social · 31/01/2025

B. D. Shrestha, et al., Confinement-induced proliferation of vortices around marine invertebrate larvae. arXiv [physics.flu-dyn] (2025). arxiv.org/abs/2501.11744

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soft/living matter fanclub @softlivmatfc.bsky.social · 31/01/2025

S. Kapadia, A. Kudrolli, Boundary curvature-dependent dynamical trapping of undulating worms. arXiv [cond-mat.soft] (2025). arxiv.org/abs/2501.10783

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soft/living matter fanclub @softlivmatfc.bsky.social · 31/01/2025

G. Shi, S. Shin, D. Thirumalai, Static three-dimensional structures determine fast dynamics between distal loci pairs in interphase chromosomes. arXiv [physics.bio-ph] (2025). arxiv.org/abs/2501.10004

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soft/living matter fanclub @softlivmatfc.bsky.social · 31/01/2025

Z. Cao, C. Du, Z. Hou, P. G. Wolynes, Motorized chromosome models of mitosis. arXiv [physics.bio-ph] (2025). arxiv.org/abs/2501.09873

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soft/living matter fanclub @softlivmatfc.bsky.social · 31/01/2025

M. Álvarez-Alegría, P. Moreno-Spiegelberg, M. A. Matías, D. Gomila, Excitable dynamics and coral reef formation: A simple model of macro-scale structure development. arXiv [q-bio.PE] (2025). arxiv.org/abs/2501.10231

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soft/living matter fanclub @softlivmatfc.bsky.social · 31/01/2025

A. Jurado Jimenez, et al., 3D dynamic multiscale force and shape analysis of in-vivo elastic stress sensors. bioRxiv 2025.01.22.633835 (2025). www.biorxiv.org/content/10.1101/202…

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soft/living matter fanclub @softlivmatfc.bsky.social · 31/01/2025

S. Dey, et al., Physical confinement regulates transition in nematode motility. bioRxiv 2025.01.22.633777 (2025). www.biorxiv.org/content/10.1101/202…

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soft/living matter fanclub @softlivmatfc.bsky.social · 31/01/2025

H. Zhou, et al., Multi-scale structure of chromatin condensates rationalizes phase separation and material properties. bioRxiv 2025.01.17.633609 (2025). www.biorxiv.org/content/10.1101/202…

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soft/living matter fanclub @softlivmatfc.bsky.social · 31/01/2025

N. Modi, et al., Transient pH changes drive vacuole formation in enzyme-polymer condensates. bioRxiv 2025.01.16.633379 (2025). www.biorxiv.org/content/10.1101/202…

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soft/living matter fanclub @softlivmatfc.bsky.social · 31/01/2025

K. Rijal, P. Mehta, A differentiable Gillespie algorithm for simulating chemical kinetics, parameter estimation, and designing synthetic biological circuits. bioRxiv 2024.07.07.602397 (2024). www.biorxiv.org/content/10.1101/202…

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

F. Ferreira, S. Moreira, M. Zhao, E. H. Barriga, Stretch-induced endogenous electric fields drive directed collective cell migration in vivo. Nat. Mater. 1–9 (2025). dx.doi.org/10.1038/s41563-024-02060…

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

S. Fan, et al., Morphology remodelling and membrane channel formation in synthetic cells via reconfigurable DNA nanorafts. Nat. Mater. 1–9 (2025). dx.doi.org/10.1038/s41563-024-02075…

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

L. M. Almassalha, et al., Chromatin conformation, gene transcription, and nucleosome remodeling as an emergent system. Sci. Adv. 11 (2025). dx.doi.org/10.1126/sciadv.adq6652

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

T. R. Sokolowski, T. Gregor, W. Bialek, G. Tkačik, Deriving a genetic regulatory network from an optimization principle. Proc. Natl. Acad. Sci. U. S. A. 122, e2402925121 (2025). dx.doi.org/10.1073/pnas.2402925121

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

I. Tah, et al., A minimal vertex model explains how the amnioserosa avoids fluidization during Drosophila dorsal closure. Proc. Natl. Acad. Sci. U. S. A. 122, e2322732121 (2025). dx.doi.org/10.1073/pnas.2322732121

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

M. L. Perkins, J. Crocker, G. Tkačik, Chromatin enables precise and scalable gene regulation with factors of limited specificity. Proc. Natl. Acad. Sci. U. S. A. 122, e2411887121 (2025). dx.doi.org/10.1073/pnas.2411887121

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

T. Harashima, A. Otomo, R. Iino, Rational engineering of DNA-nanoparticle motor with high speed and processivity comparable to motor proteins. Nat. Commun. 16, 1–17 (2025). dx.doi.org/10.1038/s41467-025-56036…

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

J. Rozman, K. V. S. Chaithanya, J. M. Yeomans, R. Sknepnek, Vertex model with internal dissipation enables sustained flows. Nat. Commun. 16, 1–8 (2025). dx.doi.org/10.1038/s41467-025-55820…

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

R. Dharan, et al., Intracellular pressure controls the propagation of tension in crumpled cell membranes. Nat. Commun. 16, 91 (2025). dx.doi.org/10.1038/s41467-024-55398…

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

I. K. Kominis, E. Gkoudinakis, Approaching the quantum limit of energy resolution in animal magnetoreception. PRX Life 3 (2025). dx.doi.org/10.1103/PRXLife.3.013004

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

E. Skoruppa, H. Schiessel, Systematic coarse-graining of sequence-dependent structure and elasticity of double-stranded DNA. Phys. Rev. Res. 7 (2025). dx.doi.org/10.1103/PhysRevResearch.…

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

D. Grossman, J.-F. Joanny, Rheology of the vertex model of tissues: Simple shear and oscillatory geometries. Phys. Rev. Res. 7 (2025). dx.doi.org/10.1103/PhysRevResearch.…

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

A. Crispino, et al., Magnetic signature of thermoelectric cardiac dynamics. Phys. Rev. E. 111 (2025). dx.doi.org/10.1103/PhysRevE.111.L01…

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

O. Baziei, B. Loewe, T. N. Shendruk, Multiparticle collision framework for active polar fluids. Phys. Rev. E. 111 (2025). dx.doi.org/10.1103/PhysRevE.111.015…

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

K. Nakamura, T. J. Kobayashi, Gradient sensing limit of an elongated cell with orientational control. Phys. Rev. E. 110 (2024). dx.doi.org/10.1103/PhysRevE.110.064…

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

M. Xia, T. Chou, Kinetic theories of state- and generation-dependent cell populations. Phys. Rev. E. 110 (2024). dx.doi.org/10.1103/PhysRevE.110.064…

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

E. Gengel, Z. Kuplik, D. Angel, E. Heifetz, Swarm coherence mechanism for jellyfish. Phys. Rev. E. 110 (2024). dx.doi.org/10.1103/PhysRevE.110.064…

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

S. Sinha, X. Li, A. Malmi-Kakkada, D. Thirumalai, Mechanical feedback links cell division and dynamics in growing cell collectives. Soft Matter (2025). dx.doi.org/10.1039/D4SM01230E

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

S. Amiri, I. Bos, E. Reyssat, C. Sykes, The nuclear lamin network passively responds to both active or passive cell movement through confinements. Soft Matter (2025). dx.doi.org/10.1039/D4SM01137F

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soft/living matter fanclub @softlivmatfc.bsky.social · 24/01/2025

M. F. Zhang, et al., Activity waves in condensed excitable phases of Quincke rollers. Soft Matter (2025). dx.doi.org/10.1039/D4SM01168F

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