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Sophia Müller-Dott

@smuellerdott.bsky.social

129 followers 83 following 3 posts

PhD candidate at saezlab.bsky.social in computational biomedicine 🔬🧬

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Sophia Müller-Dott @smuellerdott.bsky.social · 02/09/2025

Can’t believe it’s already time to say goodbye. I’m so grateful for the past years and all I’ve learned here 🙏🏼❤️

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Sophia Müller-Dott @smuellerdott.bsky.social · 26/05/2025

Very excited that another chapter of my PhD is finally out! 🎉 We compared methods to infer kinase activities from #phosphoproteomics data so check it out if that sounds interesting to you. More details in the thread below 🧵👇🏼

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Reposted by Sophia Müller-Dott

Kusterlab @kusterlab.bsky.social · 10/01/2025

🎉 We're happy to announce that our latest project was published in @naturecomms.bsky.social this week: PTMNavigator, a #bioinformatics web platform for in-depth analysis of post-translational modification (PTM) perturbation datasets. 📄 doi.org/10.1038/s414... (1/6)

doi.org

PTMNavigator: interactive visualization of differentially regulated post-translational modifications in cellular signaling pathways - Nature Communications

Post-translational modifications are important regulators of cellular pathways, but our understanding of these processes is limited. Here, the authors present a web tool that integrates various databa...

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Reposted by Sophia Müller-Dott

Saez-Rodriguez Group @saezlab.bsky.social · 23/12/2024

We present Gene Regulatory nETwork Analsyis (GRETA), a framework to infer, compare and evaluate gene regulatory networks #GRNs. With it, we have benchmarked multimodal and unimodal GRN inference methods. Check the results here 👇 Paper: doi.org/10.1101/2024.12.20.629764 Code: github.com/saezlab/greta

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Reposted by Sophia Müller-Dott

Saez-Rodriguez Group @saezlab.bsky.social · 26/11/2024

We present NetworkCommons, a unified platform 🪐 for network biology, providing access to omics data, knowledge, and contextualization methods, all with a consistent API 👇🧵 Paper: doi.org/10.1101/2024... Docs: networkcommons.readthedocs.io

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