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J. Harry Caufield

@severaltimes.bsky.social
122 followers 415 following 95 posts

I make computers do science things. I like biomedicine and data standards and AI and knowledge graphs and ontologies. I have opinions and they are my own opinions and those opinions aren't stated on behalf of any organization or government, they're just me

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J. Harry Caufield @severaltimes.bsky.social · 23h
Music for today: IX Fall$ open.spotify.com/album/10CTYD...
open.spotify.com
THE FASTEST WAY TO KILL SOMETHING SPECIAL - Album by IX Fall$ | Spotify
IX Fall$ · album · 2026 · 8 songs
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J. Harry Caufield @severaltimes.bsky.social · 05/10/2026
Music for today - Contact Sports - S/T open.spotify.com/album/7fCnhR...
open.spotify.com
Contact Sports - Album by Contact Sports | Spotify
Contact Sports · album · 2026 · 12 songs
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J. Harry Caufield @severaltimes.bsky.social · 05/10/2026
I don't think it was the first thing I was ever scared by but much of my youth was consumed by a fear of the sound of monitors being degaussed
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J. Harry Caufield @severaltimes.bsky.social · 05/10/2026
ALPACAB
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Reposted by J. Harry Caufield
Chris Mungall @cmungall.bsky.social · 21/07/2026
Excited to partner with Anthropic on using AI for #RareDisease, and grateful for support on building the @monarchinitiative.bsky.social DisMech pathomechanism knowledge base! #MedSky #GeneSky
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Reposted by J. Harry Caufield
Bioinformatics Open Source Conference (BOSC) @bosc.bsky.social · 10/07/2026
Attending #ISMB2026? Check out the #BOSC2026 keynotes and panels: Keynote 1: Maryam Zaringhalam Keynote 2: Eric Green Panel 1: Policies and Strategies for Resilient Open Science Panel 2: Open Source in the Age of AI More info: www.open-bio.org/events/bosc-...
open-bio.org
BOSC 2026
Since 2000, BOSC has covered all aspects of open source bioinformatics and open science. BOSC 2026, the 27th annual Bioinformatics Open Source Conference, will take place July 14-15 in Washington, DC,...
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Chris Mungall @cmungall.bsky.social · 04/07/2026
If you are attending #ISMB2026 you can hear @severaltimes.bsky.social's presentation at the Function COSI on our use of agentic AI to do this!
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J. Harry Caufield @severaltimes.bsky.social · 09/04/2026
What is Hardwarecore?
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J. Harry Caufield @severaltimes.bsky.social · 27/03/2026
What is the Equatorialobster?
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Reposted by J. Harry Caufield
Thiago Carvalho @cyrilpedia.bsky.social · 10/03/2026
'Phil was also the founding Editor-in-Chief of PLOS Computational Biology, where he created the beloved Ten Simple Rules series. He was so prolific in the series that the meta-article “Ten Simple Rules for Writing a PLOS Ten Simple Rules Article” literally includes, as Rule 4: “Be Philip E. Bourne.”
blog.stephenturner.us
Remembering Phil Bourne
Personal reflections on a legendary scientist, leader, builder, and mentor
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J. Harry Caufield @severaltimes.bsky.social · 07/01/2026
Music for today is Greg Haines - Slumber Tides open.spotify.com/album/7cpUOM...
open.spotify.com
Slumber Tides
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J. Harry Caufield @severaltimes.bsky.social · 28/12/2025
What is Command & Conquer Red A Dirt?
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J. Harry Caufield @severaltimes.bsky.social · 21/11/2025
That's nobody's business but the Turks
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Nifflas @nifflas.bsky.social · 21/11/2025
Whenever I see variations of the "Dependency" comic by xkcd (xkcd.com/2347/), I always feel it's actually more like this:
An edit of the xkcd comic "Dependency". In this version, it's just a heap of collapsed blocks scattered everywhere. Also everything is on fire
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J. Harry Caufield @severaltimes.bsky.social · 17/11/2025
What is Pansylvania?
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J. Harry Caufield @severaltimes.bsky.social · 14/11/2025
To be fair the document transcription performance is really impressive
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J. Harry Caufield @severaltimes.bsky.social · 14/11/2025
What is that rule about questions in headlines and how they can nearly always be answered with "No"? Or is that the entire rule? generativehistory.substack.com/p/has-google...
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J. Harry Caufield @severaltimes.bsky.social · 29/10/2025
I didn't know they canonically so short
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J. Harry Caufield @severaltimes.bsky.social · 23/10/2025
What are the Mighty Mighty Boss Bones?
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J. Harry Caufield @severaltimes.bsky.social · 21/10/2025
news.spencer.place/p/alive-inte...
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J. Harry Caufield @severaltimes.bsky.social · 13/10/2025
Who is Ellen Barkinetic?
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J. Harry Caufield @severaltimes.bsky.social · 23/09/2025
What is expired soup coupons?
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J. Harry Caufield @severaltimes.bsky.social · 23/09/2025
Good news, for now www.politico.com/news/2025/09...
politico.com
Judge orders Trump administration to restore more than $500 million in research funds to UCLA
The decision marked a major win for the beleaguered UC system, which is facing a $1 billion demand to restore the funding.
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J. Harry Caufield @severaltimes.bsky.social · 20/09/2025
What are "small ones"?
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J. Harry Caufield @severaltimes.bsky.social · 18/09/2025
What is Gopherholma?
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J. Harry Caufield @severaltimes.bsky.social · 13/09/2025
What is "30 Rock (under layers of soil and loam)"?
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J. Harry Caufield @severaltimes.bsky.social · 08/09/2025
What is a drawing class?
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J. Harry Caufield @severaltimes.bsky.social · 30/08/2025
What was the Y2K Bun?
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J. Harry Caufield @severaltimes.bsky.social · 29/08/2025
What is a schism?
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J. Harry Caufield @severaltimes.bsky.social · 22/08/2025
Music for today is Lauren Bousfield - Palimpsest open.spotify.com/album/34Vo08...
open.spotify.com
Palimpsest - Album by Lauren Bousfield | Spotify
Lauren Bousfield · album · 2020 · 13 songs
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J. Harry Caufield @severaltimes.bsky.social · 17/08/2025
What is a prying buttress?
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J. Harry Caufield @severaltimes.bsky.social · 16/08/2025
What is a chicken, operated in the manner of a fiddle?
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J. Harry Caufield @severaltimes.bsky.social · 16/08/2025
What is a Catastrophic Hybrid of Ecological Entropy and Kinetics?
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J. Harry Caufield @severaltimes.bsky.social · 05/08/2025
A use case for Vibrio phages? That is, if we aren't worried about seeding the oceans with exogenous viruses
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J. Harry Caufield @severaltimes.bsky.social · 02/08/2025
What is "you live in my walls, and hear all my calls, Information Rat, Information Rat"?
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J. Harry Caufield @severaltimes.bsky.social · 02/08/2025
What is the Information Uterus?
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Reposted by J. Harry Caufield
Alexandra Witze @alexwitze.bsky.social · 01/08/2025
"The suspended NSF grants, a list of which Science obtained from an agency source, span work from computer science and plasma physics to the measurement of volatile compounds created by this year’s Los Angeles fires." By @dangaristo.bsky.social in @science.org 🧪 www.science.org/content/arti...
science.org
NSF and NIH suspend grants to UCLA
Move follows Trump administration finding that school didn’t effectively combat antisemitism
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Reposted by J. Harry Caufield
Kathleen Bachynski @bachynski.bsky.social · 01/08/2025
I can’t begin to enumerate the ways the Corporation for Public Broadcasting made my life better, literally from my earliest memories until today. This is gut wrenching.
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J. Harry Caufield @severaltimes.bsky.social · 01/08/2025
What is Greg?
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J. Harry Caufield @severaltimes.bsky.social · 28/07/2025
What is bathtub gin?
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Reposted by J. Harry Caufield
donald @boringstein.bsky.social · 25/07/2025
more than a year ago, the lancet put this out, now seemingly lost to the collective memory: www.thelancet.com/journals/lan...
thelancet.com
Counting the dead in Gaza: difficult but essential
By June 19, 2024, 37 396 people had been killed in the Gaza Strip since the attack by Hamas and the Israeli invasion in October, 2023, according to the Gaza Health Ministry, as reported by the UN Offi...
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J. Harry Caufield @severaltimes.bsky.social · 25/07/2025
I am arguing that your work is not Findable if it is named SPARK or ADVANCE etc. (no judgement if it is! I know these things are collective decisions anyway)
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J. Harry Caufield @severaltimes.bsky.social · 25/07/2025
If you work in the sciences and are hesitant about using generative AI, let me suggest this minimal application: please please use it to make a unique, searchable name for your next project
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Reposted by J. Harry Caufield
Kristina Killgrove @killgrove.bsky.social · 24/07/2025
The 2010 paper claiming arsenic-based life has been retracted by Science today. 🧪
livescience.com
Embattled 'arsenic life' paper retracted by journal Science 15 years after publication
A controversial 2010 study that suggested bacteria could grow using arsenic instead of phosphorus has been retracted by the research journal Science.
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Reposted by J. Harry Caufield
Jeremy Berg @jeremymberg.bsky.social · 22/07/2025
NIH staff are being required to fully fund ~ 50% of their grants. This means that all 4 years of an award will be paid out of this appropriation. This will help them get the appropriated funds spent, but will mean they can only fund (1/2 + 1/4*1/2) = 5/8 has many grants as they would have otherwise.
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J. Harry Caufield @severaltimes.bsky.social · 21/07/2025
@bosc.bsky.social begins at #ismb2025 !
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J. Harry Caufield @severaltimes.bsky.social · 21/07/2025
One big help: ontologies! #ismb2025
Amos Bairoch stands at a podium in front of presentation slides at ISMB2025
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J. Harry Caufield @severaltimes.bsky.social · 21/07/2025
Amos Bairoch keynote at #ismb2025 - biocuration is still very relevant, though it's unfortunate that it's still so necessary
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J. Harry Caufield @severaltimes.bsky.social · 19/07/2025
On my way to #ismb2025
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J. Harry Caufield @severaltimes.bsky.social · 07/07/2025
Who is Vanessa Cartireton?
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