Sign in

Serdar Balci

@serdarbalci.com
351 followers 1.5K following 76 posts

MD, #pathologist 🔬 #pathology #PathSky #rstats #jamovi #ClinicoPath #jsurvival #meddecide #jjstatsplot patolojinotlari.com patolojiatlasi.com histopathologyatlas.com serdarbalci.com pbpath.org patolojiai.com parapathology.com github.com/sbalci

PostsRepliesMedia
Serdar Balci @serdarbalci.com · 12/01/2026
Saturday, 17 January 2026 Time: 9:00 AM Istanbul Pathology 2026 - Futuristic DP/AI workflows and clinicians engagement zoom.us/webinar/regi...
zoom.us
Welcome! You are invited to join a webinar: Pathology 2026 - Futuristic DP/AI workflows and clinicians engagement. After registering, you will receive a confirmation email about joining the webinar.
Welcome! You are invited to join a webinar: Pathology 2026 - Futuristic DP/AI workflows and clinicians engagement. After registering, you will receive a confirmation email about joining the webinar.
030
Serdar Balci @serdarbalci.com · 12/01/2026
1st episode of the #ASDP #Webinar Series 2026, focusing on the future of pathology in the era of digital transformation and artificial intelligence. How innovative workflows and closer clinician - pathologist collaboration can enhance clinical impact and patient care.
130
Serdar Balci @serdarbalci.com · 03/01/2026
meddecide #jamovi module has new updates. Will be in library after tests. #statistics #biostatistics #rstats #decisionstatistics github.com/sbalci/medde...
github.com
Release v0.0.32.69 prerelease for testing · sbalci/meddecide
https://github.com/sbalci/meddecide/blob/master/NEWS.md
030
Serdar Balci @serdarbalci.com · 31/12/2025
OncoPath #jamovi module has new updates. Will be in jamovi library after tests. #statistics #biostatistics #pathology #Oncology github.com/sbalci/OncoP... - Waterfall and Spider Plot. - Swimmer Plot. - IHC Heterogeneity. - Combining IHC study to get a decision test result.
github.com
Release v0.0.32.64 prerelease for testing · sbalci/OncoPath
040
Serdar Balci @serdarbalci.com · 29/12/2025
jsurvival #jamovi module has new updates. Will be in library after tests. #statistics #biostatistics github.com/sbalci/jsurv...
github.com
Release v0.0.32.62 prerelease · sbalci/jsurvival
this is the jsurvival v0.0.32.62 for prerelease. Will be updated and added to library soon. https://github.com/sbalci/jsurvival/blob/master/NEWS.md download here: https://github.com/sbalci/jsurviva...
010
Serdar Balci @serdarbalci.com · 24/12/2025
ClinicoPathDescriptives #jamovi module has new updates. Please test these before new release. #statistics #biostatistics github.com/sbalci/Clini...
github.com
Release for testing 0.0.32.56 · sbalci/ClinicoPathDescriptives
010
Serdar Balci @serdarbalci.com · 04/09/2025
Here is a prerelase of #jjstatsplot #jamovi module. The video is showing the ridgeline plot. Before jamovi library release I ask help from users. Please try module with sideload. There may be incomplete and arguments with errors. Please report them. github.com/sbalci/jjsta... youtu.be/wQsYhVlFJig
youtu.be
jamovi jjstatsplot jjridges ridgeline plot
YouTube video by SERDAR BALCI
010
Serdar Balci @serdarbalci.com · 03/09/2025
Here is a prerelase of jjstatsplot jamovi module. Before library release I ask the help from users. Please try this module with sideload. There may be incomplete and arguments with errors. Please report them. github.com/sbalci/jjsta...
github.com
Release prerelease for testing v0.0.31.57 · sbalci/jjstatsplot
Here is a prerelase of jjstatsplot jamovi module. Before library release I ask the help from users. Please try this module with sideload. There may be incomplete and arguments with errors. Please r...
010
Serdar Balci @serdarbalci.com · 31/07/2025
You can download .jmo files and use sideload to use the module. www.serdarbalci.com/ClinicoPathJ... #statistics #biostatistics #pathology #pathologists #oncology #oncologists #pathSky
serdarbalci.com
000
Serdar Balci @serdarbalci.com · 31/07/2025
The descriptive functions in #ClinicoPathDescriptives module for #jamovi 2.7.2 is ready for comments and feedbacks. There are new features for pathology and oncology research. Waterfall, Spider, and Swimmer Plots are added. vartree is now using the latest version. github.com/sbalci/Clini...
github.com
Release Patients are not just numbers · sbalci/ClinicoPathDescriptives
The descriptive functions in #ClinicoPathDescriptives module for #jamovi 2.7.2 is ready for comments and feedbacks. There are new features for pathology and oncology research. Waterfall, Spider, an...
120
Serdar Balci @serdarbalci.com · 31/07/2025
You can download .jmo files and use sideload to use the module. www.serdarbalci.com/ClinicoPathJ... #statistics #biostatistics #pathology #pathologists #oncology #oncologists #pathSky
serdarbalci.com
000
Serdar Balci @serdarbalci.com · 31/07/2025
Survival Analysis #jsurvival module for #jamovi 2.7.2 is ready for comments and feedbacks. There are new and draft features for pathology and oncology research. github.com/sbalci/jsurv... #statistics #biostatistics #pathology #pathologists #oncology #oncologists #pathSky
github.com
Release For survival in justice · sbalci/jsurvival
Survival Analysis #jsurvival module for #jamovi 2.7.2 is ready for comments and feedbacks. There are new and draft features for pathology and oncology research. https://github.com/sbalci/jsurvival/...
110
Serdar Balci @serdarbalci.com · 30/07/2025
You can download .jmo files and use sideload to use the module. www.serdarbalci.com/ClinicoPathJ... #statistics #biostatistics #pathology #pathologists #pathSky
serdarbalci.com
000
Serdar Balci @serdarbalci.com · 30/07/2025
Medical Decision #meddecide module for #jamovi 2.7.2 is ready for comments and feedbacks. Added comparison among decision tests, decision analysis when there are no gold standard, and reanimation of abandoned ROC function. github.com/sbalci/medde...
github.com
Release module for jamovi 2.7.2 · sbalci/meddecide
Medical Decision #meddecide module for #jamovi 2.7.2 is ready for comments and feedbacks. Added comparison among decision tests, decision analysis when there are no gold standard, and reanimation ...
110
Serdar Balci @serdarbalci.com · 28/07/2025
jamovi 2.7.2 is released. I have updated #jjstatsplot as a draft for #jamovi library. Please have a look and share your feedbacks. github.com/sbalci/jjsta... You can download jmo files and use sideload to use the module. www.serdarbalci.com/ClinicoPathJ... #statistics #biostatistics #dataanalysis
github.com
Release candidate for jamovi 2.7.2 release · sbalci/jjstatsplot
candidate for jamovi 2.7.2 release
000
Serdar Balci @serdarbalci.com · 22/07/2025
8 ekim 2021'deki sunumda sorduğumuz AI modellerini alalım mı yapalım mı sorusuna cevap: pathsocjournals.onlinelibrary.wiley.com/doi/10.1002/... #patoloji #dijitalpatoloji #yapayzeka #patolog #pathology #pathologists #DigitalPathology #memorialpatoloji #pathSky
000
Serdar Balci @serdarbalci.com · 22/07/2025
Aiforia modellerini rutinde kullanmaya başladık. #dijitalpatoloji #patoloji #memorialpatoloji #pathology #pathologist #pathSky youtu.be/M1xmrS6bzjk?... www.aiforia.com/resource-lib...
youtu.be
AI stories by Aiforia users: interview with Dr. İlknur Türkmen
YouTube video by Aiforia
000
Serdar Balci @serdarbalci.com · 13/07/2025
Using #QuPath with HISTAI SPIDER Colorectal Module Repository github.com/sbalci/spide... Video www.youtube.com/watch?v=8tLO... #pathsky #digitalpathology #pathology #pathologist
github.com
GitHub - sbalci/spider-qupath
Contribute to sbalci/spider-qupath development by creating an account on GitHub.
011
Serdar Balci @serdarbalci.com · 11/07/2025
Asian society of Digital Pathology Webinar 📅 Date: July 12, 2025 🕘 Time: 9:00 AM Istanbul | 10:00 AM Dubai | 11:30 AM Mumbai | 3:00 PM Tokyo | 4:00 PM Sydney ✅ Registration: zoom.us/webinar/regi...
zoom.us
Welcome! You are invited to join a webinar: Beyond the basics in DP & AI: Practical tools and real world impact . After registering, you will receive a confirmation email about joining the webinar.
Join us to explore practical tools and real-world applications of digital pathology and AI to take your workflow beyond the basics.
000
Reposted by Serdar Balci
Open Knowledge Maps @okmaps.bsky.social · 06/06/2025
👋 Hello Bluesky! We’re Open Knowledge Maps - making scientific knowledge more accessible and discoverable through visual, AI-driven discovery services. Follow us for updates on open science, open infrastructure, and the latest from our projects and community. #OpenScience #NonProfit #AI
The Open Knowledge Maps logo: a stylised lightbulb on the left, followed by the text "OPEN" in orange and "KNOWLEDGE MAPS" in dark blue, all on a white background.
052
Serdar Balci @serdarbalci.com · 05/06/2025
Gazze`de Dr. Hossam Hamada`nın İsrail saldırısında katledilmesini kınıyoruz. - Anasayfa | Patoloji Dernekleri Federasyonu turkpath.org.tr/icerik/halka...
turkpath.org.tr
Gazze`de Dr. Hossam Hamada`nın İsrail saldırısında katledilmesini kınıyoruz. - Anasayfa | Patoloji Dernekleri Federasyonu
Patoloji bilim dalı, hastalıklara yol açan nedenleri (
000
Serdar Balci @serdarbalci.com · 05/06/2025
Bade harabül Basra
000
Serdar Balci @serdarbalci.com · 18/05/2025
#jamovi #meddecide modülüne şu an yetim kalmış psychoPDA modülündeki ROC analizini eklemeye niyetlendim. Şimdilik biraz karalama aşamasında. Geri bildirim yapan olursa sevinirim. Side load ile yüklenebilecek windows paketi: github.com/sbalci/medde... #rstats kodları: github.com/sbalci/medde...
github.com
000
Serdar Balci @serdarbalci.com · 17/05/2025
My attempt to use #histai #SPIDER #Colorectal #Model within #QuPath with help of #Anthropic #Claude #pathology #pathologist #pathsky www.youtube.com/watch?v=8tLO...
youtube.com
QuPath & histai SPIDER Colorectal Model
YouTube video by SERDAR BALCI
010
Reposted by Serdar Balci
JASP @jaspstats.bsky.social · 12/04/2025
Thinking of switching from teaching with SPSS to JASP in your stats course? We made a guide just for you. Same theory, simpler software, better teaching. Discovering Statistics Using JASP Blog: jasp-stats.org/blog/discove... #statistics #teaching #JASP #openscience #edu
jasp-stats.org
"Discovering Statistics Using JASP": A Teaching Guide - JASP - Free and User-Friendly Statistical Software
As the title suggests, the shiny new textbook “Discovering Statistics Using JASP” differs from “Discovering Statistics Using SPSS” mainly in the software that is being used. While the theory sections ...
14220
Reposted by Serdar Balci
Serdar Balci @serdarbalci.com · 13/03/2025
🔬 Join the ASDP Webinar – 12 April 2025! 🕘 Time:9:00 AM Istanbul | 10:00 AM Dubai | 11:30 AM Mumbai | 3:00 PM Tokyo | 4:00 PM Sydney Step into #digitalpathology & AI: A Beginner’s Roadmap zoom.us/webinar/regi... #ASDP #ASDPWebinarSeries #PathSky #pathology #pathologists
031
Reposted by Serdar Balci
WHO @who.int · 18/03/2025
The #measles vaccine has saved an estimated 5 lives every second since 2000. 👉Prevent measles by getting vaccinated with two doses of the measles vaccine.
Measles is preventable with just two doses of measles vaccine.
302503951
Serdar Balci @serdarbalci.com · 17/03/2025
HE & IHC Stain quality Analysis Tool #vibecoding based on An international study of stain variability in histopathology using qualitative and quantitative analysis www.sciencedirect.com/science/arti... www.youtube.com/watch?v=MoDc... #pathology #pathologist #learningtocode #quality #pathsky
youtube.com
H&E and IHC Stain Quality Analysis Tool 2
YouTube video by SERDAR BALCI
131
Serdar Balci @serdarbalci.com · 13/03/2025
🔬 Join the ASDP Webinar – 12 April 2025! 🕘 Time:9:00 AM Istanbul | 10:00 AM Dubai | 11:30 AM Mumbai | 3:00 PM Tokyo | 4:00 PM Sydney Step into #digitalpathology & AI: A Beginner’s Roadmap zoom.us/webinar/regi... #ASDP #ASDPWebinarSeries #PathSky #pathology #pathologists
031
Reposted by Serdar Balci
William Gibson @greatdismal.bsky.social · 10/03/2025
82110438016281
Serdar Balci @serdarbalci.com · 08/03/2025
working on HistAI colorectal model to learn more on image processing. The interface is made by Anthropic claude www.youtube.com/watch?v=2A-7...
youtube.com
histai SPIDER colorectal model deneme1
YouTube video by SERDAR BALCI
000
Serdar Balci @serdarbalci.com · 08/03/2025
Ektekine benzer grafikleri paylaşmayan yöneticilerin 8 Mart kutlamalarını kabul etmeyin. www.nature.com/articles/s41...
000
Reposted by Serdar Balci
Jan Trnka @jantrnka.bsky.social · 07/03/2025
Aaaaah, LLMs are so good at data analysis!
1161
Reposted by Serdar Balci
Darren Dahly @statsepi.bsky.social · 06/03/2025
I think you mean "non-specific".
5779
Serdar Balci @serdarbalci.com · 02/03/2025
I hope there are mirrors of genome data, TCGA, cbioportal also.
110
Reposted by Serdar Balci
Josephine Kavanagh @ourhaus.bsky.social · 02/03/2025
Not all over yet Serdar. bsky.app/profile/ourh...
111
Serdar Balci @serdarbalci.com · 02/03/2025
Sonra işte olanlar oldu, ölenler öldü. Projeler ve hayaller akim kaldı. Halbuki bugün bir PubMed mirror'u yapabilmemiz mümkündü. Bir tür "içimde kalanlar" ya da "ukdeler CV"si hazırlayayım bari ...
110
Serdar Balci @serdarbalci.com · 02/03/2025
Yıllar önce PubMed abstract'larını sistematik bir şekilde -yine PubMed'in sağladığı entrez araçlarıyla- indirip kaydetmiştim. O dönemlerde daha Large Language Modeller yoktu ama "write your own book" kodlu projeler üzerinde çalışıyorduk. github.com/sbalci/bibli...
github.com
GitHub - sbalci/bibliometrics: Research on PubMed and Reproducible Bibliometric Analysis of Pathology Articles
Research on PubMed and Reproducible Bibliometric Analysis of Pathology Articles - sbalci/bibliometrics
110
Serdar Balci @serdarbalci.com · 02/03/2025
Sosyal medyada paylaşılanlara göre PubMed erişiminde aksaklıklar yaşanıyormuş. Eskiden hemen her Amerikan fedeal bütçesinin askıda kaldığı dönemde güncellemelere ara verilirdi. Ama bu derecede erişim sıkıntısını hiç görmemiştim.
100
Serdar Balci @serdarbalci.com · 19/02/2025
Ordan burdan derlenmiş ama düzenlenmemiş güncel patoloji içerikleri: www.parapathology.com/appendix/mis...
parapathology.com
miscellaneous | (Para) Pathology Notes
Miscellaneous links to be organised. Ordan burdan derlenmiş ama düzenlenmemiş güncel patoloji içerikleri.
000
Reposted by Serdar Balci
Randall Munroe @xkcd.com · 12/02/2025
Incoming Asteroid xkcd.com/3049
281219483260
Serdar Balci @serdarbalci.com · 02/02/2025
Dear #statistics #biostatistics folks, Please explain me this graph: doi.org/10.1016/j.jo...
120
Reposted by Serdar Balci
WHO @who.int · 25/01/2025
It’s #CervicalCancer awareness month! The #HPV vaccine is highly effective. It can prevent 9 in 10 cases of the most high-risk strains of human papillomavirus (HPV) – the #1 cause of cervical cancer.
The HPV vaccine is safe, effective, and protects against cervical cancer.
191453396
Serdar Balci @serdarbalci.com · 03/01/2025
Patoloji araştırmalarında neden jamovi kullanayım diyenler için bir liste: www.serdarbalci.com/ClinicoPathJ... #patoloji #jamovi #arastirma #istatistik #biyoistatistik
serdarbalci.com
Users of ClinicoPath
000
Serdar Balci @serdarbalci.com · 28/12/2024
In memoriam: Ali Ayhan (1940-2024) www.international-journal-of-gynecological-cancer.com/action/showP...
000
Reposted by Serdar Balci
AndrewFolpe @folpe-mn-st.bsky.social · 24/12/2024
#PathSky 67M, long smoking hx, LN met. Keratin negative outside- “?sarcoma?” The hx suggests an undifferentiated pulmonary carcinoma with SMARCA4 loss. Our keratin was a bit positive and SMARCA4 is gone. These were originally thought to be thoracic sarcomas but have smoking related mutations.
AE1/3SMARCA4
0205
Serdar Balci @serdarbalci.com · 24/12/2024
The webinar is free and focuses ASDP Seul meeting. Impactful sessions and breakthroughs. Emerging trends in #digitalpathology and AI applications Connect with professionals shaping the future of #pathology #pathologists #PathSky zoom.us/webinar/regi...
030
Reposted by Serdar Balci
Megan @megothelioma.bsky.social · 23/12/2024
One could easily mistake these for histiocytes. But what if I told you these findings were associated with a flask-shaped ulcer in the cecum of a patient from Mexico? #microbiology #pathsky #pathology
1175