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Riccardo Vicedomini

@rvicedomini.bsky.social

22 followers 18 following 0 posts

CNRS researcher at @irisa-lab.bsky.social‬ / @genscaleteam.bsky.social

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Reposted by Riccardo Vicedomini

Josipa Lipovac @jlipovac.bsky.social · 16/05/2025

I am happy to share our new preprint introducing MADRe - a pipeline for Metagenomic Assembly-Driven Database Reduction, enabling accurate and computationally efficient strain-level metagenomic classification. 🔗https://www.biorxiv.org/content/10.1101/2025.05.12.653324v1 1/9

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Reposted by Riccardo Vicedomini

Rayan Chikhi @rayanchikhi.bsky.social · 03/02/2025

We have updated all Logan contigs (now at version 1.1)! Contiguity has been much improved (2x) and a duplicated k-mers bug has been fixed. More information and changelog here: github.com/IndexThePlan...

github.com

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Reposted by Riccardo Vicedomini

Camila Duitama @camiladuitama.bsky.social · 04/02/2025

🧬 Excited to share our latest work, MUSET 🌭, a new tool for creating abundance unitig matrices from sequencing data. It was published yesterday in Oxford Bioinformatics if you want to have a look👀 : academic.oup.com/bioinformati... Let's break it down:

academic.oup.com

MUSET: Set of utilities for constructing abundance unitig matrices from sequencing data

AbstractSummary. MUSET is a novel set of utilities designed to efficiently construct abundance unitig matrices from sequencing data. Unitig matrices extend

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